Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_08581
Subject:
NM_001369763.1
Aligned Length:
2196
Identities:
1178
Gaps:
852

Alignment

Query    1  ATGGCTCTTCCTCAG------GGTCTACTGACATTCAGGGATGTGGCCATAGAATTCTCTCAGGAGGAGTGGAA  68
            |||||||||||||||      |||   |||.||..||||                   ||.|.|.|.|||||  
Sbjct    1  ATGGCTCTTCCTCAGATTTTCGGT---CTGTCACCCAGG-------------------CTAAAGTGCAGTGG--  50

Query   69  ATGCCTGGACC-CTGCTCAGAGGA--CTCTA-TACAGAGACGTGATGCTGGAG-AATTATAGGAACCTG-----  132
             ||.|   ||| |.|||||..|.|  |||.| |.|..||       |.|..|| ||||.|     ||||     
Sbjct   51  -TGTC---ACCTCGGCTCACTGCAACCTCCACTTCCCAG-------GTTCAAGCAATTCT-----CCTGCCTCA  108

Query  133  GTCTCC-------CTG--------GATACCTCTTCCAAATGCATGATGAAGATGTTCTCATCAACAGGACAAGG  191
            |.||.|       |||        ||||.|||||||||||||||||||||||..||||..||||||||.|||||
Sbjct  109  GCCTTCCAAGTAGCTGGGACTACAGATATCTCTTCCAAATGCATGATGAAGACATTCTTCTCAACAGGGCAAGG  182

Query  192  CAATACAGAAGTGGTCCACACAGGGACATTGCAAATACATGCAAGTCATCACATTGGAGATACTTGCTTCCAGG  265
            |||||||||||.|.|||||||||||||||||||||.|||.|||||||||||||||||||||..||||||||||.
Sbjct  183  CAATACAGAAGCGTTCCACACAGGGACATTGCAAAGACAAGCAAGTCATCACATTGGAGATTTTTGCTTCCAGA  256

Query  266  AAATTGAGAAAGATATTCATGACTTTGTGTTTCAGTGGCAAGAAAATGAAACAAATGGCCATGAAGCACTCATG  339
            |||||||||||||.|||||||.|||...||||||||||.|||||.||||||||||||.|||||.|||||.||||
Sbjct  257  AAATTGAGAAAGACATTCATGGCTTCCAGTTTCAGTGGAAAGAAGATGAAACAAATGACCATGCAGCACCCATG  330

Query  340  ACAAAAATCAAAAAGTTGA-TGAGTAGTACAGAGCGACATGATCAAAGGCATGCTGGAAACAAACCTATTAAAA  412
            |||.||||||||.|||||| || |||||||||..|.|||||||||||||||||||||||||||.|.|||||||.
Sbjct  331  ACAGAAATCAAAGAGTTGACTG-GTAGTACAGGCCAACATGATCAAAGGCATGCTGGAAACAAGCATATTAAAG  403

Query  413  ATGAGCTTGGATCAAGCTTTCATTCGCATCTGCCTGAAGTGCACATATTTCACCCCGAAGGGAAAATTGGTAAT  486
            ||.|||||||||.|||||||||||||||||||||||||.|||||||||||||.||.||||||||||||||||||
Sbjct  404  ATCAGCTTGGATTAAGCTTTCATTCGCATCTGCCTGAACTGCACATATTTCAGCCTGAAGGGAAAATTGGTAAT  477

Query  487  CAAGTTGAGAAGGCTATCAACGATGCTTTCTCAGTTTCAGCATCCCAACGAATTTCCTGTAGGCCAAAAACTCG  560
            ||||||||||||.||||||||.||||||.||||||||||.||||||||.||||||..||||||||.|||||.|.
Sbjct  478  CAAGTTGAGAAGTCTATCAACAATGCTTCCTCAGTTTCAACATCCCAAAGAATTTGTTGTAGGCCCAAAACCCA  551

Query  561  TATTTCTAATAAGTATAGGAATAATTTCCTCCAGTCTTCATTACTCACACAAAAACGGGAAGTACACACAAGAG  634
            ||||||||||||||||.|.|||||||.||||||.||||||||||||||||||||||||.|.|||||||..||||
Sbjct  552  TATTTCTAATAAGTATGGAAATAATTCCCTCCATTCTTCATTACTCACACAAAAACGGAATGTACACATGAGAG  625

Query  635  AAAAATCTTTCCAACGTAATGAGAGTGGCAAAGCCTTTAATGGTAGCTCACTCTTAAAAAAACATCAGATAATC  708
            ||||||||||||||.|||.|||||||||||||.||||||||.||||||||||.|||||||||||||||||||.|
Sbjct  626  AAAAATCTTTCCAATGTATTGAGAGTGGCAAATCCTTTAATTGTAGCTCACTTTTAAAAAAACATCAGATAACC  699

Query  709  CATTTAGGAGACAAACAGTATAAATGTGATGTATGCGGCAAGGACTTTCATCAGAAGCGATACCTTGCATGCCA  782
            ||.||||.|||.|||||.|.||||||||||||||..|||||||..|||.|||||||||||||||||||||||||
Sbjct  700  CACTTAGAAGAGAAACAATGTAAATGTGATGTATATGGCAAGGTATTTAATCAGAAGCGATACCTTGCATGCCA  773

Query  783  ---TAGATGTCACACTGGTGAGAATCCTTACAAGTGTAATGAGTGTGGCAAGACATTCAGTCACAATTCAGCCC  853
               |||||.|||||.||.||||||.||||||||||||||||||||||||||||..||..||||||||.||.|||
Sbjct  774  TCGTAGATCTCACATTGATGAGAAACCTTACAAGTGTAATGAGTGTGGCAAGATCTTTGGTCACAATACATCCC  847

Query  854  TGTTAGTTCACAAGGC----------------------------------------------------------  869
            |.||..||||||||||                                                          
Sbjct  848  TCTTCCTTCACAAGGCGCTTCATACTGCAGACAAACCTTATGAATGTGAAGAATGTGACAAAGTTTTCAGTCGC  921

Query  870  --------------------------------------------------------------------------  869
                                                                                      
Sbjct  922  AAATCACACCTTGAAACACATAAGATAATTTATACTGGAGGGAAACCATACAAATGTAAGGTTTGTGACAAAGC  995

Query  870  ------------------------------------AATTCATACTGGAGAGAAACCTTACAAGTGTAATGAAT  907
                                                ||||||.|||||||||||||||||||||||||||||||
Sbjct  996  TTTCACATGTAATTCATACCTAGCAAAACATACTATAATTCACACTGGAGAGAAACCTTACAAGTGTAATGAAT  1069

Query  908  GTGGCAAGGTTTTTAATCAACAATCAAACCTTGCACGTCATCATAGAGTTCATACTGGAGAGAAACCTTACAAA  981
            ||||||||||||||||||.||..||||.|||||||||.||||.|||..||||||||||||||||||||||..||
Sbjct 1070  GTGGCAAGGTTTTTAATCGACTGTCAACCCTTGCACGCCATCGTAGGCTTCATACTGGAGAGAAACCTTATGAA  1143

Query  982  TGTGAAGAATGTGACAAAGTTTTCAGTCGCAAATCACACCTTGAAAGACATAGGAGAATTCACACTGGAGAGAA  1055
            ||||||||||||||.|||||||||||||||||||||||.|||||||||||||.|||.|||||.|||||||||||
Sbjct 1144  TGTGAAGAATGTGAAAAAGTTTTCAGTCGCAAATCACATCTTGAAAGACATAAGAGGATTCATACTGGAGAGAA  1217

Query 1056  ACCATACAAATGTAAGGTTTGTGACAAGGCTTT--CAGACGTGATTCACACCTGGCACAACATACTGTAATTCA  1127
            |||||||||||||||||||||||||||||||||  ||.|  |.|||||.||||||||.||||||.|.|||||||
Sbjct 1218  ACCATACAAATGTAAGGTTTGTGACAAGGCTTTTGCATA--TAATTCATACCTGGCAAAACATAGTATAATTCA  1289

Query 1128  CACTGGAGAGAAACCTTACAAGTGTAATGAGTGTGGCAAGACCTTCGTTCAAAATTCATCTCTTGTA----ATG  1197
            ||||||||||||.|||||||||||||||||.|||||||||...||...||||.|.|||.||||||.|    || 
Sbjct 1290  CACTGGAGAGAAGCCTTACAAGTGTAATGAATGTGGCAAGGTTTTTAATCAACAATCAACTCTTGCACGCCAT-  1362

Query 1198  CATAAGGTCATTCATACTGGAGAGAAACGTTACAAGTGTAATGAATGTGGCAAGGTTTTTAATCA----CAAAT  1267
            ||||  |.| |||||||||.||||||||..|||||.|||.|.|||||||.|||.||||    |||    |||||
Sbjct 1363  CATA--GAC-TTCATACTGCAGAGAAACCATACAAATGTGAAGAATGTGACAAAGTTT----TCAGGTGCAAAT  1429

Query 1268  CAAACCTTG-----------------------------------------------------------------  1276
            ||.||||||                                                                 
Sbjct 1430  CACACCTTGAAAGACATAGGAGGATTCATACTGGAGAGAAACCATACAAATGTAAGGTTTGTGACAAGGCTTTC  1503

Query 1277  ----------CATG---------TCATCGTAGACTTCATACTGGAGAGAAACCTTACAAGTGTAATGAATGTGG  1331
                      ||||         .||||..|||.|||||||||||||||||||.||||.|||||||||||||||
Sbjct 1504  CGGAGTGATTCATGCCTTACAGAACATCAGAGAGTTCATACTGGAGAGAAACCATACATGTGTAATGAATGTGG  1577

Query 1332  CAAGGTTTTTAATCGAAAATCAAACCTTGAACGTCATCATAGACTTCATACTGGAAAGAAATCT----------  1395
            |||||||||||.|..||||.|||||||||.|.|||||||||.|||||||||||.|.|||||.|.          
Sbjct 1578  CAAGGTTTTTAGTACAAAAGCAAACCTTGCATGTCATCATAAACTTCATACTGCAGAGAAACCGTACAAATGTG  1651

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 1652  AAGAATGTGAGAAAGTTTTCAGTCGCAAATCACACATGGAAAGACATAGGAGGATTCATACTGGAGAGAAACCG  1725

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 1726  TACAAATGTAAGGTTTGTGACAAGGCTTTCCGGAGGGATTCACACCTGGCACAACATCAGAGAGTTCATACTGG  1799

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 1800  AGAGAAACCTTACAAGTGTAATGAGTGTGGCAAGACCTTCCGTCAGACATCATCGCTTATAATCCATCGTAGGC  1873

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 1874  TTCATACTGGAGAGAAACCTTACAAGTGTAATGAGTGTGGCAAGACCTTCAGTCAGATGTCATCCCTCGTATAC  1947

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 1948  CATCATAGGCTTCATAGTGGAGAGAAACCTTACAAGTGTAATGAATGTGGCAAGGTTTTTAATCAACAAGCACA  2021

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2022  CCTTGCACAGCATCAGAGAGTTCATACTGGAGAGAAACCTTACAAGTGTAATGAGTGTGGCAAGACCTTCAGTC  2095

Query 1396  --------------------------------------------------  1395
                                                              
Sbjct 2096  AGATGTCAAACCTTGTATACCATCATAGACTTCATAGTGGAGAGAAACCT  2145

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