Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_08581
Subject:
NR_102299.2
Aligned Length:
4795
Identities:
1240
Gaps:
3417

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AGACCAGGAAGTGGATCCCGTGGAATGACGGTCACGCCGCGGCGGGCGGATTGACTTCTAAAGACTGTTGGTAC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GTGAGAAAGAAACCCAGAAGAGGAAGAGGAAAGCAAAGGAGTCAGGGATGGCTCTTCCTCAGTCCCTCTCATCT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CGCTTAGGTTCCGTCTCTCGTGACCCAGTGTCATGAACTTGGGAAGAGGCTGCACTGGGCAGGTCCTGGGAAGG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GCTCACACCCCGACATGGATGGACACGGGGTGAGGGTCCTGTGGTGTCAGTGCTCTTGGGCAGCAGGGATTGTT  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CAGGGGCCACATCTGGATGCACTGTCAGCTCACTGTGGACCAGGATTGGAGCAGCTGCCAATGGGAGTCACGTA  370

Query    1  -----ATGGCTCTTCCTCA----------GGGTCTACTGACATTCAGGGATGTGGCCATAGAATTCTCTCAGGA  59
                 |||         ||          |||||||.|||||||||||||.|||||||||||||||||||||||
Sbjct  371  TTAATATG---------CACGAAGTACGTGGGTCTATTGACATTCAGGGACGTGGCCATAGAATTCTCTCAGGA  435

Query   60  GGAGTGGAAATGCCTGGACCCTGCTCAGAGGACTCTATACAGAGACGTGATGCTGGAGAATTATAGGAACCTGG  133
            ||||||||||||||||||||||||||||||||||.|||||||.|||||||||||||||||||||||||||||.|
Sbjct  436  GGAGTGGAAATGCCTGGACCCTGCTCAGAGGACTTTATACAGGGACGTGATGCTGGAGAATTATAGGAACCTCG  509

Query  134  TCTCCCTG------------------------------------------------------------------  141
            ||||||||                                                                  
Sbjct  510  TCTCCCTGGAGTTTTGGTCTGTCATCCCGGCTAAAGTACAGTGGTGTCATCTCCGCTCACTGCAACCTCCACTT  583

Query  142  ----------------------------------------------------GATACCTCTTCCAAATGCATGA  163
                                                                ||||.||||||||||||||||.
Sbjct  584  CCCAGGTTCAAGCAATTCTCCTGCCTCAGCCTTCCAAGTACCTGGGACTACAGATATCTCTTCCAAATGCATGT  657

Query  164  TGAAGATGTTCTCATCAACAGGACAAGGCAATACAGAAGTGGTCCACACAGGGACATTGCAAATACATGCAAGT  237
            ||||||.|||.||.||||||||.||||||||||||||||||.|||||||||||||||||||.|.|||.||||||
Sbjct  658  TGAAGACGTTGTCGTCAACAGGGCAAGGCAATACAGAAGTGATCCACACAGGGACATTGCACAGACAAGCAAGT  731

Query  238  CATCACATTGGAGATACTTGCTTCCAGGAAATTGAGAAAGATATTCATGACTTTGTGTTTCAGTGGCAAGAAAA  311
            ||||||||||||||...|||.|||||.||||||||||||||.|||||||.|||.|.||||||||||.|||||.|
Sbjct  732  CATCACATTGGAGAATTTTGTTTCCATGAAATTGAGAAAGACATTCATGGCTTCGAGTTTCAGTGGAAAGAAGA  805

Query  312  TGAAACAAATGGCCATGAAGCACTCATGACAAAAATCAAAAAGTT-GATGAGTAGTACAGAGCGACATGATCAA  384
            |||||||||||||||||.|||||.|||||||.||||||||.|||| |.|| |||||||||..|.||||||||||
Sbjct  806  TGAAACAAATGGCCATGCAGCACCCATGACAGAAATCAAAGAGTTGGCTG-GTAGTACAGGCCAACATGATCAA  878

Query  385  AGGCATGCTGGAAACAAACCTATTAAAAATGAGCTTGGATCAAGCTTTCATTCGCATCTGCCTGAAGTGCACAT  458
            |||||||||||||||||.|.|||||||.||.|||||||||||||||||||||.|||||||||||||..||||||
Sbjct  879  AGGCATGCTGGAAACAAGCGTATTAAAGATCAGCTTGGATCAAGCTTTCATTTGCATCTGCCTGAACCGCACAT  952

Query  459  ATTTCACCCCGAAGGGAAAATTGGTAATCAAGTTGAGAAGGCTATCAACGATGCTTTCTCAGTTTCAGCATCCC  532
            ||||||..|.||||||||||||||||||||||||||||||.||||||||.||||||.||||||||||.||||||
Sbjct  953  ATTTCAGTCTGAAGGGAAAATTGGTAATCAAGTTGAGAAGTCTATCAACAATGCTTCCTCAGTTTCAACATCCC  1026

Query  533  AACGAATTTCCTGTAGGCCAAAAACTCGTATTTCTAATAAGTATAGGAATAATTTCCTCCAGTCTTCATTACTC  606
            ||.||||||..||||||||.|||||.|.||||||||||||||||.|.|||||||.||||||.||||||||||||
Sbjct 1027  AAAGAATTTGTTGTAGGCCCAAAACCCATATTTCTAATAAGTATGGAAATAATTCCCTCCATTCTTCATTACTC  1100

Query  607  ACACAAAAACGGGAAGTACACACAAGAGAAAAATCTTTCCAACGTAATGAGAGTGGCAAAGCCTTTAATGGTAG  680
            |||||||||.||||||||||||..||||||||||||||..||.|||...||||...||||.||||||||.|.||
Sbjct 1101  ACACAAAAATGGGAAGTACACATGAGAGAAAAATCTTTTGAATGTATACAGAGCTTCAAATCCTTTAATTGCAG  1174

Query  681  CTCACTCTTAAAAAAACATCAGATAATCCATTTAGGAGACAAACAGTATAAATGTGATGTATGCGGCAAGGACT  754
            |||||||||||||||||||||||||||.||.||||.|||.|||||.|.|||||||||||||||.|||||||.||
Sbjct 1175  CTCACTCTTAAAAAAACATCAGATAATTCACTTAGAAGAGAAACAATGTAAATGTGATGTATGTGGCAAGGTCT  1248

Query  755  TTCATCAGAAGCGATACCTTGCATGCCA---TAGATGTCACACTGGTGAGAATCCTTACAAGTGTAATGAGTGT  825
            ||.|||||||||||||||||||.|||||   |||||||||||||||||||||.|||||||||||||||||||||
Sbjct 1249  TTAATCAGAAGCGATACCTTGCCTGCCATCGTAGATGTCACACTGGTGAGAAACCTTACAAGTGTAATGAGTGT  1322

Query  826  GGCAAGACATTCAGTCACAATTCAGCCCTGTTAGTTCACAA---------------------------------  866
            ||||||||.||..||||.||||||.||||.||..|||||||                                 
Sbjct 1323  GGCAAGACCTTTGGTCATAATTCATCCCTCTTCATTCACAAAGCGCTTCATACTGGAGAGAAACCTTATGAATG  1396

Query  867  --------------------------------------------------------------------------  866
                                                                                      
Sbjct 1397  TGAAGAATGTGACAAAGTTTTCAGTCGCAAATCACACCTTGAAAGACATAAGAGGATTCATACTGGAGAGAAAC  1470

Query  867  -------------------------------------------------GGCAA------------TTCATACT  879
                                                             |||||            ||||.|||
Sbjct 1471  CATACAAATGTAAGGTTTGTGATGAGGCTTTCGCATATAATTCATATCTGGCAAAACATACTATACTTCACACT  1544

Query  880  GGAGAGAAACCTTACAAGTGTAATGAATGTGGCAAGGTTTTTAATCAACAATCAAACCTTGCACGTCATCATAG  953
            ||||||||||||||||..|||||||||||||||||.||||||||||.||.|||||.|||||||||.||||||||
Sbjct 1545  GGAGAGAAACCTTACACATGTAATGAATGTGGCAAAGTTTTTAATCGACTATCAACCCTTGCACGCCATCATAG  1618

Query  954  AGTTCATACTGGAGAGAAACCTTACAAATGTGAAGAATGTGACAAAGTTTTCAGTCGCAAATCACACCTTGAAA  1027
            |.||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||
Sbjct 1619  ACTTCATACTGGAGAGAAACCTTACAAATGTGAAGAGTGTGACAAAGTTTTCAGTCGCAAATCACACCTTGAAA  1692

Query 1028  GACAT---------------------------------------------------------------------  1032
            |||||                                                                     
Sbjct 1693  GACATAGGAGGATTCATAGTGGAGAGAAACCTTACAAATGTGAAGAATGTTGCAAAGTTTTCAGTCGCAAATCA  1766

Query 1033  ---------------AGGAGAATTCACACTGGAGAGAAACCATACAAATGTAAGGTTTGTGACAAGGCTTT-CA  1090
                           |||||.|||||.|||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1767  AACCTGGAAAGACACAGGAGGATTCATACTGGAGAGAAACCATACAAATGTAAGGTTTGTGACAAGGCTTTCCA  1840

Query 1091  GACGTGATTCACACCTGGCACAACATACTG-TAATTCACACTGGAGAGAAACCTTACAAGTGTAATGAGTGTGG  1163
            || |.||||||||||||||||||||| |.| .|.||||.|||||||||||||||||||||||||||||||||||
Sbjct 1841  GA-GGGATTCACACCTGGCACAACAT-CAGAGAGTTCATACTGGAGAGAAACCTTACAAGTGTAATGAGTGTGG  1912

Query 1164  CAAGACCTTCGTTCAAAATTCATCTCTTGTAATGCAT--AAGGTCATTCATACTGGAGAGAAACGTTACAAGTG  1235
            |||||||||||.|||.|..|||||.|||.||||.|||  .|||  .||||||||||||||||||.|||||||||
Sbjct 1913  CAAGACCTTCGGTCAGACATCATCGCTTATAATCCATCGTAGG--CTTCATACTGGAGAGAAACCTTACAAGTG  1984

Query 1236  TAATGAATGTGGCAAG-------GT-------------TTTTA-------------------------------  1258
            ||||||.|||||||||       ||             ||.||                               
Sbjct 1985  TAATGAGTGTGGCAAGACCTTCAGTCAGATGTCATCCCTTGTATACCATCATAGGCTTCATAGTGGAGAGAAGC  2058

Query 1259  ---------------------------------ATCACAAATCAAACCTTGCATGTCATCGTAG--ACTTCATA  1297
                                             |||||||.|| ||||.||.|.|||||  .||  |.||||||
Sbjct 2059  CTTAATAGTGTAATGAGTGTGGCAAGACCTTCCATCACAATTC-AACCCTGTAAGTCAT--AAGGCAATTCATA  2129

Query 1298  CTGGAGAGAAACCTTACAAGTGTAATGAATGTGGCAAGGTTTTTAATCGAAAATCAAACCTTGAACGTCATCAT  1371
            ||||||||||||||||||||..||||||||||||||||||||||||||.||||.|||.|.|||.||.|||.|||
Sbjct 2130  CTGGAGAGAAACCTTACAAGCATAATGAATGTGGCAAGGTTTTTAATCAAAAAGCAACCTTTGCACATCACCAT  2203

Query 1372  AGACTTCATACTGGAAAGAAATCT--------------------------------------------------  1395
            |||||||||||||||.|||||.||                                                  
Sbjct 2204  AGACTTCATACTGGAGAGAAACCTTACAAATGGGAGGAATGTGACAAAAGTTTTCAGTTGTAAATCAAACCTTA  2277

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2278  AAACACATAAGAAAATTCACATTGAAGAGAAACCATACAGAGGTAAGGTTTGTGACAAGGTTTTTGCATATAAT  2351

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2352  GCATATCTGGCAAAACATACTAGAATTCACACTGGAGAGAAACTCATTATAAGTGTAATGAGTGTGGCAAGACC  2425

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2426  GTTGGTCAAAATTCACACCTTGTAATTAAAAGGTCAAAATTCACACCTTGTAATTCATAGTGGAGAGAAACCTT  2499

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2500  ACAAGCACAATGAATGTGACATGGTTTTTAATCAACAATCACACCTTGCAAGTCATCATAGACTTCATACTGCA  2573

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2574  TAGAAATCTTACAAACGTGAACAATGTGACAAAGTTTTCATTCACAAATCCAGCTTCAAATACATAGGAGAATT  2647

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2648  CACACTGGAGAAAAGCCATAGAAATGTAAGGTTTGTGACAAGGCTTTCGGGAATGATTCACACGTGGCACCCCA  2721

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2722  TACTAGAATTCACACTGGAGAGAAACCTTACAAGTGCAATGAGTGTGGCAAACCCTTTAGTGGGCAGTCACCAC  2795

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2796  TTATTCACCATCAAGCAATCCATGGTATAGGGAAACTTGACTAATGTAATGATTGTCACAAAGTTTTCAGTAAT  2869

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2870  GCTACAACCATTGCACATCATTGGAGAATCCACAGTGAAGAGATCTTACAAGTGTAATAAATGTGGCAAATTTT  2943

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2944  TCAGACATCGTTCATGCCTTGCATTTCACTGGTGAACTCATGCTGGAGAGAAACCTTATAAATGTCATGATTGA  3017

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 3018  GGCAAGGTCTTCAGTCAAGCTTCATCCTATGCAAAACATAGGAGGATTCATACAGGAGAGAAACCTCACAAGTG  3091

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 3092  TGATGATTGTGGCAAAGCGTTTACTTCACATTCACACCTCATTAGACATCAGAGAATCCATGCTGGACAGAAAT  3165

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 3166  CTTACAAATGTCATCAGTGTGGAAGGGTCTTCAGTCCAAGGTCACTCCTTGCAGACCATCAGACAATTCCTTTT  3239

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 3240  GGAGACAGTTGTTTCAAATGCAGTGAGTATAGCAAACCATCAAGCATTAATTGACATTAGAGTCAAATCAGCCT  3313

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 3314  TGACCTGAGTTTGTTGATTTAACATTGATTTCAAGCATTAATTGCCATTAAACTGTTTATGTTAAGAGGATTGC  3387

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 3388  ACTGGGGGCCATGGCTCATGCCTGTAATTCCAGCACTTTGAGAGGCAAAGACAGGTAGGTCACTGGAGCTCACG  3461

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 3462  AGTTTGAGAACAGCCTAGCCAACAGATGGGAGCTACTTTTCCCAGCCTTTATTTTCTTTTTCTTGTTTTTTTTT  3535

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 3536  TGAGATGGAGTCTTGCTCTGTCGCCCAGGTTGGAGTGCAGTGGCACGATCTCAGCTCACTGCAACCTCCTCCTC  3609

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 3610  CCAGGTTCAAGCAATTCTCCTGCCTCAGTCTCCCAAGTAGCTGACACTACAGTTGTGTGCCACCACACCTGGGT  3683

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 3684  AATTTTTTGTGTTTTTAGTAGAGACTGGGTTTCACCGTGTTAGCCAGAATGGTCTCTATCTTCTGACTTTATGA  3757

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 3758  TCCACCCGACTCCACCTCCCAAAGTGCTGAGATTACAGGAGTGAGCCACTGTGCCTGGCCTGTTTTTTGTTTCT  3831

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 3832  TTAACAAAAAGTTATAGAGACTTCTATGAGTATTGTACCGAATCTAAATCACAATTGAGTATATAATCATTGAG  3905

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 3906  CGATATTCATTTTTCCAATCAGTATGGGATTTATATCTATTTATACATGTTTTTAATCATTTTGATCAATGTTT  3979

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 3980  ATAGATTTCAAGGTACAAACCTCACTTTTTATGTTTATTCCTAAATATTTCTTACTTTAAGTTCTTTAGCAAAT  4053

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 4054  GGAATTGGTTTTTAATTTTCTTTTAAAATTATTTATTGTTAATGTATGGAAATTCAACTAATTTTTGGTGCTGT  4127

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 4128  TATTCTATTCTGCAAATAAACTGAATGTGTTTGTTAGTTCCAGTTGCATTTTGGCTGACTCTTTGTGATTTTCT  4201

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 4202  TTACAGAAGGTCATGTCATCTACAAACAAATAAAATTTGACTTCTTTCTTTCTGATTTGGATGAGTTTGATTTC  4275

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 4276  TTTTGCTATTTCATTGTTCTGGCTAGGACAGCCAGTATTGATTGAATAGAAGGGGTGAGAGCATTCTTGCATCA  4349

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 4350  TGTGAGATCCTACAGGAAAAGCATTCCGTTTTCCCTGATTGGTTATTTCTGCTGTGGTCATTTCATGGATGGTC  4423

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 4424  TTTGTATTGCTGAGGTAAATTTTCTTCTGTATCTATTTTGTGTGGGATTTCTATGATGACTTGATGTTGACTTT  4497

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 4498  TGTGAAATGCTTTTTCTCCATGTATTGAGATGATGTGGTTTTCATCTTTCATTGTGTTCAAGTGGTATATCACA  4571

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 4572  TTGATTTGCTTGACTATGTTGAACCATCCTTGCATCCCAGAAATAAGTGGCACTTGCATATCTACAATCCTTTT  4645

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 4646  AATATCCTCTTGAATACAGTTCGCTAGTACAAGGGGTCTTCAAGAAGTTCATGAAAAAAATACATATTATGTGA  4719

Query 1396  -----------------------------------------------------------  1395
                                                                       
Sbjct 4720  AAATTGCACATGATGTCACATTTTCTGCACCAAAATAAACTGGCACAAATCTGTTATAA  4778

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