Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_08581
Subject:
NR_102301.2
Aligned Length:
4677
Identities:
1240
Gaps:
3299

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AGACCAGGAAGTGGATCCCGTGGAATGACGGTCACGCCGCGGCGGGCGGATTGACTTCTAAAGACTGTTGGTAC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GTGAGAAAGAAACCCAGAAGAGGAAGAGGAAAGCAAAGGAGTCAGGGATGGCTCTTCCTCAGTCCCTCTCATCT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CGCTTAGGTTCCGTCTCTCGTGACCCAGTGTCATGAACTTGGGAAGAGGCTGCACTGGGCAGGTCCTGGGAAGG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GCTCACACCCCGACATGGATGGACACGGGGTGAGGGTCCTGTGGTGTCAGTGCTCTTGGGCAGCAGGGATTGTT  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CAGGGGCCACATCTGGATGCACTGTCAGCTCACTGTGGACCAGGATTGGAGCAGCTGCCAATGGGAGTCACGTA  370

Query    1  -----ATGGCTCTTCCTCA----------GGGTCTACTGACATTCAGGGATGTGGCCATAGAATTCTCTCAGGA  59
                 |||         ||          |||||||.|||||||||||||.|||||||||||||||||||||||
Sbjct  371  TTAATATG---------CACGAAGTACGTGGGTCTATTGACATTCAGGGACGTGGCCATAGAATTCTCTCAGGA  435

Query   60  GGAGTGGAAATGCCTGGACCCTGCTCAGAGGACTCTATACAGAGACGTGATGCTGGAGAATTATAGGAACCTGG  133
            ||||||||||||||||||||||||||||||||||.|||||||.|||||||||||||||||||||||||||||.|
Sbjct  436  GGAGTGGAAATGCCTGGACCCTGCTCAGAGGACTTTATACAGGGACGTGATGCTGGAGAATTATAGGAACCTCG  509

Query  134  TCTCCCTGGATACCTCTTCCAAATGCATGATGAAGATGTTCTCATCAACAGGACAAGGCAATACAGAAGTGGTC  207
            ||||||||||||.||||||||||||||||.||||||.|||.||.||||||||.||||||||||||||||||.||
Sbjct  510  TCTCCCTGGATATCTCTTCCAAATGCATGTTGAAGACGTTGTCGTCAACAGGGCAAGGCAATACAGAAGTGATC  583

Query  208  CACACAGGGACATTGCAAATACATGCAAGTCATCACATTGGAGATACTTGCTTCCAGGAAATTGAGAAAGATAT  281
            |||||||||||||||||.|.|||.||||||||||||||||||||...|||.|||||.||||||||||||||.||
Sbjct  584  CACACAGGGACATTGCACAGACAAGCAAGTCATCACATTGGAGAATTTTGTTTCCATGAAATTGAGAAAGACAT  657

Query  282  TCATGACTTTGTGTTTCAGTGGCAAGAAAATGAAACAAATGGCCATGAAGCACTCATGACAAAAATCAAAAAGT  355
            |||||.|||.|.||||||||||.|||||.||||||||||||||||||.|||||.|||||||.||||||||.|||
Sbjct  658  TCATGGCTTCGAGTTTCAGTGGAAAGAAGATGAAACAAATGGCCATGCAGCACCCATGACAGAAATCAAAGAGT  731

Query  356  T-GATGAGTAGTACAGAGCGACATGATCAAAGGCATGCTGGAAACAAACCTATTAAAAATGAGCTTGGATCAAG  428
            | |.|| |||||||||..|.|||||||||||||||||||||||||||.|.|||||||.||.|||||||||||||
Sbjct  732  TGGCTG-GTAGTACAGGCCAACATGATCAAAGGCATGCTGGAAACAAGCGTATTAAAGATCAGCTTGGATCAAG  804

Query  429  CTTTCATTCGCATCTGCCTGAAGTGCACATATTTCACCCCGAAGGGAAAATTGGTAATCAAGTTGAGAAGGCTA  502
            ||||||||.|||||||||||||..||||||||||||..|.||||||||||||||||||||||||||||||.|||
Sbjct  805  CTTTCATTTGCATCTGCCTGAACCGCACATATTTCAGTCTGAAGGGAAAATTGGTAATCAAGTTGAGAAGTCTA  878

Query  503  TCAACGATGCTTTCTCAGTTTCAGCATCCCAACGAATTTCCTGTAGGCCAAAAACTCGTATTTCTAATAAGTAT  576
            |||||.||||||.||||||||||.||||||||.||||||..||||||||.|||||.|.||||||||||||||||
Sbjct  879  TCAACAATGCTTCCTCAGTTTCAACATCCCAAAGAATTTGTTGTAGGCCCAAAACCCATATTTCTAATAAGTAT  952

Query  577  AGGAATAATTTCCTCCAGTCTTCATTACTCACACAAAAACGGGAAGTACACACAAGAGAAAAATCTTTCCAACG  650
            .|.|||||||.||||||.|||||||||||||||||||||.||||||||||||..||||||||||||||..||.|
Sbjct  953  GGAAATAATTCCCTCCATTCTTCATTACTCACACAAAAATGGGAAGTACACATGAGAGAAAAATCTTTTGAATG  1026

Query  651  TAATGAGAGTGGCAAAGCCTTTAATGGTAGCTCACTCTTAAAAAAACATCAGATAATCCATTTAGGAGACAAAC  724
            ||...||||...||||.||||||||.|.|||||||||||||||||||||||||||||.||.||||.|||.||||
Sbjct 1027  TATACAGAGCTTCAAATCCTTTAATTGCAGCTCACTCTTAAAAAAACATCAGATAATTCACTTAGAAGAGAAAC  1100

Query  725  AGTATAAATGTGATGTATGCGGCAAGGACTTTCATCAGAAGCGATACCTTGCATGCCA---TAGATGTCACACT  795
            |.|.|||||||||||||||.|||||||.||||.|||||||||||||||||||.|||||   |||||||||||||
Sbjct 1101  AATGTAAATGTGATGTATGTGGCAAGGTCTTTAATCAGAAGCGATACCTTGCCTGCCATCGTAGATGTCACACT  1174

Query  796  GGTGAGAATCCTTACAAGTGTAATGAGTGTGGCAAGACATTCAGTCACAATTCAGCCCTGTTAGTTCACAA---  866
            ||||||||.|||||||||||||||||||||||||||||.||..||||.||||||.||||.||..|||||||   
Sbjct 1175  GGTGAGAAACCTTACAAGTGTAATGAGTGTGGCAAGACCTTTGGTCATAATTCATCCCTCTTCATTCACAAAGC  1248

Query  867  --------------------------------------------------------------------------  866
                                                                                      
Sbjct 1249  GCTTCATACTGGAGAGAAACCTTATGAATGTGAAGAATGTGACAAAGTTTTCAGTCGCAAATCACACCTTGAAA  1322

Query  867  --------------------------------------------------------------------------  866
                                                                                      
Sbjct 1323  GACATAAGAGGATTCATACTGGAGAGAAACCATACAAATGTAAGGTTTGTGATGAGGCTTTCGCATATAATTCA  1396

Query  867  -----GGCAA------------TTCATACTGGAGAGAAACCTTACAAGTGTAATGAATGTGGCAAGGTTTTTAA  923
                 |||||            ||||.|||||||||||||||||||..|||||||||||||||||.||||||||
Sbjct 1397  TATCTGGCAAAACATACTATACTTCACACTGGAGAGAAACCTTACACATGTAATGAATGTGGCAAAGTTTTTAA  1470

Query  924  TCAACAATCAAACCTTGCACGTCATCATAGAGTTCATACTGGAGAGAAACCTTACAAATGTGAAGAATGTGACA  997
            ||.||.|||||.|||||||||.|||||||||.||||||||||||||||||||||||||||||||||.|||||||
Sbjct 1471  TCGACTATCAACCCTTGCACGCCATCATAGACTTCATACTGGAGAGAAACCTTACAAATGTGAAGAGTGTGACA  1544

Query  998  AAGTTTTCAGTCGCAAATCACACCTTGAAAGACAT---------------------------------------  1032
            |||||||||||||||||||||||||||||||||||                                       
Sbjct 1545  AAGTTTTCAGTCGCAAATCACACCTTGAAAGACATAGGAGGATTCATAGTGGAGAGAAACCTTACAAATGTGAA  1618

Query 1033  ---------------------------------------------AGGAGAATTCACACTGGAGAGAAACCATA  1061
                                                         |||||.|||||.|||||||||||||||||
Sbjct 1619  GAATGTTGCAAAGTTTTCAGTCGCAAATCAAACCTGGAAAGACACAGGAGGATTCATACTGGAGAGAAACCATA  1692

Query 1062  CAAATGTAAGGTTTGTGACAAGGCTTT-CAGACGTGATTCACACCTGGCACAACATACTG-TAATTCACACTGG  1133
            ||||||||||||||||||||||||||| |||| |.||||||||||||||||||||| |.| .|.||||.|||||
Sbjct 1693  CAAATGTAAGGTTTGTGACAAGGCTTTCCAGA-GGGATTCACACCTGGCACAACAT-CAGAGAGTTCATACTGG  1764

Query 1134  AGAGAAACCTTACAAGTGTAATGAGTGTGGCAAGACCTTCGTTCAAAATTCATCTCTTGTAATGCAT--AAGGT  1205
            |||||||||||||||||||||||||||||||||||||||||.|||.|..|||||.|||.||||.|||  .||| 
Sbjct 1765  AGAGAAACCTTACAAGTGTAATGAGTGTGGCAAGACCTTCGGTCAGACATCATCGCTTATAATCCATCGTAGG-  1837

Query 1206  CATTCATACTGGAGAGAAACGTTACAAGTGTAATGAATGTGGCAAG-------GT-------------TTTTA-  1258
             .||||||||||||||||||.|||||||||||||||.|||||||||       ||             ||.|| 
Sbjct 1838  -CTTCATACTGGAGAGAAACCTTACAAGTGTAATGAGTGTGGCAAGACCTTCAGTCAGATGTCATCCCTTGTAT  1910

Query 1259  ---------------------------------------------------------------ATCACAAATCA  1269
                                                                           |||||||.|| 
Sbjct 1911  ACCATCATAGGCTTCATAGTGGAGAGAAGCCTTAATAGTGTAATGAGTGTGGCAAGACCTTCCATCACAATTC-  1983

Query 1270  AACCTTGCATGTCATCGTAG--ACTTCATACTGGAGAGAAACCTTACAAGTGTAATGAATGTGGCAAGGTTTTT  1341
            ||||.||.|.|||||  .||  |.||||||||||||||||||||||||||..||||||||||||||||||||||
Sbjct 1984  AACCCTGTAAGTCAT--AAGGCAATTCATACTGGAGAGAAACCTTACAAGCATAATGAATGTGGCAAGGTTTTT  2055

Query 1342  AATCGAAAATCAAACCTTGAACGTCATCATAGACTTCATACTGGAAAGAAATCT--------------------  1395
            ||||.||||.|||.|.|||.||.|||.||||||||||||||||||.|||||.||                    
Sbjct 2056  AATCAAAAAGCAACCTTTGCACATCACCATAGACTTCATACTGGAGAGAAACCTTACAAATGGGAGGAATGTGA  2129

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2130  CAAAAGTTTTCAGTTGTAAATCAAACCTTAAAACACATAAGAAAATTCACATTGAAGAGAAACCATACAGAGGT  2203

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2204  AAGGTTTGTGACAAGGTTTTTGCATATAATGCATATCTGGCAAAACATACTAGAATTCACACTGGAGAGAAACT  2277

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2278  CATTATAAGTGTAATGAGTGTGGCAAGACCGTTGGTCAAAATTCACACCTTGTAATTAAAAGGTCAAAATTCAC  2351

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2352  ACCTTGTAATTCATAGTGGAGAGAAACCTTACAAGCACAATGAATGTGACATGGTTTTTAATCAACAATCACAC  2425

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2426  CTTGCAAGTCATCATAGACTTCATACTGCATAGAAATCTTACAAACGTGAACAATGTGACAAAGTTTTCATTCA  2499

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2500  CAAATCCAGCTTCAAATACATAGGAGAATTCACACTGGAGAAAAGCCATAGAAATGTAAGGTTTGTGACAAGGC  2573

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2574  TTTCGGGAATGATTCACACGTGGCACCCCATACTAGAATTCACACTGGAGAGAAACCTTACAAGTGCAATGAGT  2647

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2648  GTGGCAAACCCTTTAGTGGGCAGTCACCACTTATTCACCATCAAGCAATCCATGGTATAGGGAAACTTGACTAA  2721

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2722  TGTAATGATTGTCACAAAGTTTTCAGTAATGCTACAACCATTGCACATCATTGGAGAATCCACAGTGAAGAGAT  2795

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2796  CTTACAAGTGTAATAAATGTGGCAAATTTTTCAGACATCGTTCATGCCTTGCATTTCACTGGTGAACTCATGCT  2869

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2870  GGAGAGAAACCTTATAAATGTCATGATTGAGGCAAGGTCTTCAGTCAAGCTTCATCCTATGCAAAACATAGGAG  2943

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2944  GATTCATACAGGAGAGAAACCTCACAAGTGTGATGATTGTGGCAAAGCGTTTACTTCACATTCACACCTCATTA  3017

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 3018  GACATCAGAGAATCCATGCTGGACAGAAATCTTACAAATGTCATCAGTGTGGAAGGGTCTTCAGTCCAAGGTCA  3091

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 3092  CTCCTTGCAGACCATCAGACAATTCCTTTTGGAGACAGTTGTTTCAAATGCAGTGAGTATAGCAAACCATCAAG  3165

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 3166  CATTAATTGACATTAGAGTCAAATCAGCCTTGACCTGAGTTTGTTGATTTAACATTGATTTCAAGCATTAATTG  3239

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 3240  CCATTAAACTGTTTATGTTAAGAGGATTGCACTGGGGGCCATGGCTCATGCCTGTAATTCCAGCACTTTGAGAG  3313

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 3314  GCAAAGACAGGTAGGTCACTGGAGCTCACGAGTTTGAGAACAGCCTAGCCAACAGATGGGAGCTACTTTTCCCA  3387

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 3388  GCCTTTATTTTCTTTTTCTTGTTTTTTTTTTGAGATGGAGTCTTGCTCTGTCGCCCAGGTTGGAGTGCAGTGGC  3461

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 3462  ACGATCTCAGCTCACTGCAACCTCCTCCTCCCAGGTTCAAGCAATTCTCCTGCCTCAGTCTCCCAAGTAGCTGA  3535

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 3536  CACTACAGTTGTGTGCCACCACACCTGGGTAATTTTTTGTGTTTTTAGTAGAGACTGGGTTTCACCGTGTTAGC  3609

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 3610  CAGAATGGTCTCTATCTTCTGACTTTATGATCCACCCGACTCCACCTCCCAAAGTGCTGAGATTACAGGAGTGA  3683

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 3684  GCCACTGTGCCTGGCCTGTTTTTTGTTTCTTTAACAAAAAGTTATAGAGACTTCTATGAGTATTGTACCGAATC  3757

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 3758  TAAATCACAATTGAGTATATAATCATTGAGCGATATTCATTTTTCCAATCAGTATGGGATTTATATCTATTTAT  3831

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 3832  ACATGTTTTTAATCATTTTGATCAATGTTTATAGATTTCAAGGTACAAACCTCACTTTTTATGTTTATTCCTAA  3905

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 3906  ATATTTCTTACTTTAAGTTCTTTAGCAAATGGAATTGGTTTTTAATTTTCTTTTAAAATTATTTATTGTTAATG  3979

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 3980  TATGGAAATTCAACTAATTTTTGGTGCTGTTATTCTATTCTGCAAATAAACTGAATGTGTTTGTTAGTTCCAGT  4053

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 4054  TGCATTTTGGCTGACTCTTTGTGATTTTCTTTACAGAAGGTCATGTCATCTACAAACAAATAAAATTTGACTTC  4127

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 4128  TTTCTTTCTGATTTGGATGAGTTTGATTTCTTTTGCTATTTCATTGTTCTGGCTAGGACAGCCAGTATTGATTG  4201

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 4202  AATAGAAGGGGTGAGAGCATTCTTGCATCATGTGAGATCCTACAGGAAAAGCATTCCGTTTTCCCTGATTGGTT  4275

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 4276  ATTTCTGCTGTGGTCATTTCATGGATGGTCTTTGTATTGCTGAGGTAAATTTTCTTCTGTATCTATTTTGTGTG  4349

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 4350  GGATTTCTATGATGACTTGATGTTGACTTTTGTGAAATGCTTTTTCTCCATGTATTGAGATGATGTGGTTTTCA  4423

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 4424  TCTTTCATTGTGTTCAAGTGGTATATCACATTGATTTGCTTGACTATGTTGAACCATCCTTGCATCCCAGAAAT  4497

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 4498  AAGTGGCACTTGCATATCTACAATCCTTTTAATATCCTCTTGAATACAGTTCGCTAGTACAAGGGGTCTTCAAG  4571

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 4572  AAGTTCATGAAAAAAATACATATTATGTGAAAATTGCACATGATGTCACATTTTCTGCACCAAAATAAACTGGC  4645

Query 1396  ---------------  1395
                           
Sbjct 4646  ACAAATCTGTTATAA  4660

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