Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_08607
Subject:
NM_001289622.1
Aligned Length:
1837
Identities:
1295
Gaps:
356

Alignment

Query    1  ATGCGGTATTCGCACCACTGTGAGCACCTTTTAGAGAGACTGAACAAACAGCGGGAAGCAGGTTTTCTCTGTGA  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  CTGTACCATAGTGATTGGGGAATTCCAGTTTAAAGCTCATAGGAATGTGCTGGCCTCCTTTAGTGAGTATTTTG  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  GTGCGATCTACAGAAGCACTTCTGAGAACAATGTCTTTCTTGATCAGAGTCAGGTGAAGGCTGATGGATTTCAG  222
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  223  AAACTGTTGGAGTTTATATACACAGGAACTTTAAATCTTGACAGTTGGAATGTTAAAGAAATTCATCAGGCTGC  296
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  297  TGACTATCTCAAAGTGGAAGAGGTGGTCACTAAATGCAAAATAAAGATGGAAGATTTTGCTTTTATTGCTAATC  370
                                                          |||||.|||||.|||||.|||||||.||
Sbjct    1  ----------------------------------------------ATGGAGGATTTCGCTTTCATTGCTAGTC  28

Query  371  CTTCTTCTACAGAGATATCTAGTATTACTGGAAACATTGAATTGAATCAACAGACTTGTCTTCTTACTCTGCGA  444
            |.||||||||.||.|||||||||||||||||||||||.|||||||||||||||.|.|||||||||||.||||||
Sbjct   29  CCTCTTCTACCGAAATATCTAGTATTACTGGAAACATCGAATTGAATCAACAGGCCTGTCTTCTTACCCTGCGA  102

Query  445  GATTATAATAATCGAGAGAAATCAGAAGTATCTACAGATTTGATTCAGGCAAATCCTAAACAAGGCGCGTTAGC  518
            ||||||||.|||||.||||||||||||||.||.||.||.|...||||||||||.|||||||.|.|.||.||..|
Sbjct  103  GATTATAACAATCGGGAGAAATCAGAAGTCTCCACGGACTCAGTTCAGGCAAACCCTAAACCACGGGCATTGAC  176

Query  519  GAAAAAGTCATCTCAAACGAAAAAGAAGAAGAAGGCTTTCAACTCCCCGAAAACAGGGCAGAATAAAACAGTGC  592
            .||.||.||.|||||||..|||||||||||||||||.||||..||.|.||||.|||||||||..|||.||||||
Sbjct  177  AAAGAAATCGTCTCAAAGTAAAAAGAAGAAGAAGGCCTTCAGTTCTCAGAAACCAGGGCAGAGCAAAGCAGTGC  250

Query  593  AATATCCCAGTGACATCTTAGAGAATGCATCTGTTGAATTATTCCTAGA----TGCAAATAAACTGCCCACACC  662
            |.||.|||||||||.|..||||||..||.|||||.||||||||||||||    .||||.|    ||.||.||||
Sbjct  251  AGTACCCCAGTGACGTTCTAGAGAGCGCGTCTGTGGAATTATTCCTAGAGACGAGCAAGT----TGTCCTCACC  320

Query  663  TGTAGTAGAACAAGTTGCA--CAAATAAATGATAATTCAGAACTCGAGTTGACATCAGTTGTGGAAAATACTTT  734
            |||||||||.|||.|  ||  |||..||||||.|.|||||||||.||||||||.||.|||||||||||||||||
Sbjct  321  TGTAGTAGAGCAAAT--CATTCAAGGAAATGACAGTTCAGAACTTGAGTTGACCTCGGTTGTGGAAAATACTTT  392

Query  735  TCCAGCACAAGATATTGTGCACACTGTTACAGTGAAACGGAAACGTGGAAAATCACAGCCAAACTGTGCTCTGA  808
            ||||.|.||||||||||||||.|||||||||||.||||||||||||.|.|||||||||.||.|.||||||||||
Sbjct  393  TCCAACCCAAGATATTGTGCAAACTGTTACAGTCAAACGGAAACGTCGGAAATCACAGTCACATTGTGCTCTGA  466

Query  809  AAGAACACTCTATGTCTAATATAGCCAGCGTCAAGAGTCCTTATGAGGCGGAGAACTCCGGGGAAGAGCTGGAT  882
            ||||||||||.||||||||.||||||||.||.||||||||.||||||..|||||||.|||||||||||||||||
Sbjct  467  AAGAACACTCCATGTCTAACATAGCCAGTGTAAAGAGTCCATATGAGCTGGAGAACGCCGGGGAAGAGCTGGAT  540

Query  883  -CAGAGGTATTCCAAGGCCAAGCCAATGTGTAACACATGTGGGAAAGTGTTTTCAGAAGCCAGCAGTTTGAGAA  955
             || ||||.|||||||||||||||||||||.|||||.||.|||||.||||||||.|||||||||||..||.|||
Sbjct  541  GCA-AGGTTTTCCAAGGCCAAGCCAATGTGCAACACTTGCGGGAAGGTGTTTTCGGAAGCCAGCAGCCTGCGAA  613

Query  956  GGCACATGAGAATACATAAAGGAGTCAAACCTTACGTCTGCCACTTATGTGGAAAGGCATTTACCCAATGTAAC  1029
            ||||||||||||||||.|||||||||||.||.||||||||||||||.||||||||||||||||||||.||.|||
Sbjct  614  GGCACATGAGAATACACAAAGGAGTCAAGCCCTACGTCTGCCACTTGTGTGGAAAGGCATTTACCCAGTGCAAC  687

Query 1030  CAGCTGAAAACGCATGTAAGAACTCATACAGGTGAGAAGCCATACAAATGTGAATTGTGTGATAAAGGATTTGC  1103
            ||.||.||.||||||||.||.|||||.|||||.||.|.||||||.|||||||||.|||||||||||||||||||
Sbjct  688  CAACTAAAGACGCATGTGAGGACTCACACAGGGGAAAGGCCATATAAATGTGAACTGTGTGATAAAGGATTTGC  761

Query 1104  TCAGAAATGTCAGCTAGTCTTCCATAGTCGCATGCATCATGGTGAAGAAAAACCCTATAAATGTGATGTATGCA  1177
            |||||||||.|||||.|||||||||||||||||||||||||||||.|||||||||||||||||||||||.||||
Sbjct  762  TCAGAAATGCCAGCTGGTCTTCCATAGTCGCATGCATCATGGTGAGGAAAAACCCTATAAATGTGATGTGTGCA  835

Query 1178  ACTTACAGTTTGCAACTTCTAGCAATCTCAAGATTCATGCAAGGAAGCATAGTGGAGAGAAGCCATATGTCTGT  1251
            |.|||||||||||||||||||||||.||||||||||||||||||||.||.||||||||.|||||||||||.|||
Sbjct  836  ATTTACAGTTTGCAACTTCTAGCAACCTCAAGATTCATGCAAGGAAACACAGTGGAGAAAAGCCATATGTTTGT  909

Query 1252  GATAGGTGTGGACAGAGATTTGCTCAAGCCAGCACACTGACCTATCATGTCCGTAGGCATACTGGAGAAAAGCC  1325
            |||||.|||||.|||||||||||.||.||||||||.|||||||||||||||||.||.||.||||||||||||||
Sbjct  910  GATAGATGTGGGCAGAGATTTGCCCAGGCCAGCACGCTGACCTATCATGTCCGCAGACACACTGGAGAAAAGCC  983

Query 1326  TTATGTATGTGATACCTGTGGGAAGGCATTTGCTGTCTCTAGTTCTCTTATCACTCATTCTCGAAAACATACAG  1399
            ||||||.||.||.|||||.||.||||||||||||||||||||.||||||||||||||||||||.|||||.||||
Sbjct  984  TTATGTGTGCGACACCTGCGGAAAGGCATTTGCTGTCTCTAGCTCTCTTATCACTCATTCTCGGAAACACACAG  1057

Query 1400  GTGAAAAACCATACATATGTGGTATTTGTGGGAAAAGTTTTATTTCCTCAGGAGAGCTCAACAAACACTTTCGG  1473
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.
Sbjct 1058  GTGAAAAACCATACATATGTGGTATTTGTGGGAAAAGTTTTATTTCCTCAGGAGAGCTCAACAAACACTTTCGA  1131

Query 1474  TCCCATACAGGAGAAAGACCATTTATCTGCGAATTATGTGGAAATTCTTACACAGATATTAAAAATTTAAAGAA  1547
            |||||||||||||||.|||||||||||||.||||||||||||||.||.||||||||.||||||||.||||||||
Sbjct 1132  TCCCATACAGGAGAACGACCATTTATCTGTGAATTATGTGGAAACTCATACACAGACATTAAAAACTTAAAGAA  1205

Query 1548  GCACAAAACAAAAGTCCATTCTGGTGCAGATAAAACTCTAGACTCCAGTGCAGAGGATCATACTTTGAGTGAAC  1621
            |||.||||||||.||||||||||||.|.|||||||.||.|||.|.|||||.|||.||.|||.||.|.||.||||
Sbjct 1206  GCATAAAACAAAGGTCCATTCTGGTACTGATAAAAATCCAGATTGCAGTGTAGATGACCATGCTGTAAGCGAAC  1279

Query 1622  AGGATTCCATACAAAAAAGTCCTTTATCAGAAACTATGGATGTGAAGCCTTCTGATATGACTTTACCATTAGCT  1695
            |.||.|||.||||.|.||||||.||.||||||||..|.||||||||||||||||||||||||.||||.|||||.
Sbjct 1280  AAGACTCCGTACAGAGAAGTCCCTTGTCAGAAACACTAGATGTGAAGCCTTCTGATATGACTCTACCCTTAGCG  1353

Query 1696  CTTCCACTTGGGACTGAGGACCATCACATGCTTCTGCCTGTCACGGATACTCAGTCTCCTACATCAGATACATT  1769
            |||||||||||||||||.|||||.||.|||||.||||||||||||||.|.||||||||||.|||||||.||..|
Sbjct 1354  CTTCCACTTGGGACTGAAGACCACCAGATGCTCCTGCCTGTCACGGACAGTCAGTCTCCTGCATCAGACACGCT  1427

Query 1770  GTTGAGGTCAACTGTGAATGGGTATTCAGAACCACAGTTGATTTTTTTACAACAATTATAC  1830
            |.|||||||.||.|||||||||||.||.|||||.||||||||||||||||||||.||.|||
Sbjct 1428  GCTGAGGTCCACGGTGAATGGGTACTCGGAACCGCAGTTGATTTTTTTACAACAGTTGTAC  1488

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