Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_09022
Subject:
NM_001330317.2
Aligned Length:
1573
Identities:
732
Gaps:
833

Alignment

Query    1  ATGG-TGCCGCCACGACGCCATCGCGGGGCAGGAAGGCCAGGGGTGCTGAGTTCTTCACCTCCTTTTAGACTGA  73
            |||| |.||                   .|.|||.||..|||||||||||||||||||||||||||||||||||
Sbjct    1  ATGGATTCC-------------------TCTGGATGGAGAGGGGTGCTGAGTTCTTCACCTCCTTTTAGACTGA  55

Query   74  GATCTGCCAAGTTTTCCGGCATTGCTCTTGAGGATCTCAGAAGGGCTCTTAAGACAAGACTGCAAATGGTGTGT  147
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   56  GATCTGCCAAGTTTTCCGGCATTGCTCTTGAGGATCTCAGAAGGGCTCTTAAGACAAGACTGCAAATGGTGTGT  129

Query  148  GTATTTGTCATGAACCGAATGAATTCCCAGAACAGTGGTTTCACTCAGCGCAGGCGAATGGCTCTTGGGATTGT  221
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  130  GTATTTGTCATGAACCGAATGAATTCCCAGAACAGTGGTTTCACTCAGCGCAGGCGAATGGCTCTTGGGATTGT  203

Query  222  TATTCTTCTGCTTGTTGATGTGATATGGGTTGCTTCCTCTGAACTTACTTCGTATGTTTTTACCCAGTACAACA  295
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  204  TATTCTTCTGCTTGTTGATGTGATATGGGTTGCTTCCTCTGAACTTACTTCGTATGTTTTTACCCAGTACAACA  277

Query  296  AACCATTCTTCAGCACCTTTGCAAAAACATCTATGTTTGTTTTGTACCTTTTGGGCTTTATTATTTGGAAGCCA  369
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  278  AACCATTCTTCAGCACCTTTGCAAAAACATCTATGTTTGTTTTGTACCTTTTGGGCTTTATTATTTGGAAGCCA  351

Query  370  TGGAGACAACAGTGTACAAGAGGACTTCGCGGAAAGCATGCTGCTTTTTTTGCAGATGCTGAAGGTTACTTTGC  443
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  352  TGGAGACAACAGTGTACAAGAGGACTTCGCGGAAAGCATGCTGCTTTTTTTGCAGATGCTGAAGGTTACTTTGC  425

Query  444  TGCTTGCACAACAGATACAACTATGAATAGTTCTTTGAGTGAACCTCTGTATGTGCCTGTGAAATTCCATGATC  517
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  426  TGCTTGCACAACAGATACAACTATGAATAGTTCTTTGAGTGAACCTCTGTATGTGCCTGTGAAATTCCATGATC  499

Query  518  TTCCAAGTGAAAAACCTGAGAGCACAAACATTGATACTGAAAAAACCCCCAAAAAGTCTCGTGTGAGGTTCAGT  591
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  500  TTCCAAGTGAAAAACCTGAGAGCACAAACATTGATACTGAAAAAACCCCCAAAAAGTCTCGTGTGAGGTTCAGT  573

Query  592  AATATCATGGAGATTCGACAGCTTCCGTCAAGTCATGCATTGGAAGCAAAGTTGTCTCGCATGTCATATCCTGT  665
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  574  AATATCATGGAGATTCGACAGCTTCCGTCAAGTCATGCATTGGAAGCAAAGTTGTCTCGCATGTCATATCCTGT  647

Query  666  GAAAGAACAAGAATCCATACTGAAAACTGTGGGGAAACTTACTGCAACTCAAGTAGCGAAAATTAGCTTTTTTT  739
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  648  GAAAGAACAAGAATCCATACTGAAAACTGTGGGGAAACTTACTGCAACTCAAGTAGCGAAAATTAGCTTTTTTT  721

Query  740  TTTGCTTTGTG--TGGT-TTTTGGCAAATTTGTCATATCAAGAAGCACTTTCAGACACACAAGTTGCTATAGTT  810
            |||||||||||  .||| ||||.                                                   
Sbjct  722  TTTGCTTTGTGGTAGGTCTTTTA---------------------------------------------------  744

Query  811  AATATTTTATCTTCAACTTCCGGACTTTTTACCTTAATCCTTGCTGCAGTATTTCCAAGTAACAGTGGAGATAG  884
                                                                                      
Sbjct  745  --------------------------------------------------------------------------  744

Query  885  ATTTACCCTTTCTAAACTATTAGCTGTAATTTTAAGCATTGGAGGCGTTGTACTGGTAAACCTGGCAGGGTCTG  958
                                                                                      
Sbjct  745  --------------------------------------------------------------------------  744

Query  959  AAAAACCTGCTGGAAGAGACACAGTAGGTTCCATTTGGTCTCTTGCTGGAGCCATGCTCTATGCTGTCTATATT  1032
                                                                                      
Sbjct  745  --------------------------------------------------------------------------  744

Query 1033  GTTATGATTAAGAGAAAAGTAGATAGAGAAGACAAGTTGGATATTCCAATGTTCTTTGGTTTTGTAGGTTTGTT  1106
                                                                                      
Sbjct  745  --------------------------------------------------------------------------  744

Query 1107  TAATCTGCTGCTCTTATGGCCAGGTTTCTTTTTACTTCATTATACTGGATTTGAGGACTTCGAGTTTCCCAATA  1180
                                                                                      
Sbjct  745  --------------------------------------------------------------------------  744

Query 1181  AAGTAGTATTAATGTGCATTATCATTAATGGCCTTATTGGAACAGTACTCTCAGAGTTCCTGTGGTTGTGGGGC  1254
                                                                                      
Sbjct  745  --------------------------------------------------------------------------  744

Query 1255  TGCTTTCTTACCTCATCATTGATAGGCACACTTGCACTAAGCCTTACAATACCTCTGTCCATAATAGCTGACAT  1328
                                                                                      
Sbjct  745  --------------------------------------------------------------------------  744

Query 1329  GTGTATGCAAAAGGTGCAGTTTTCTTGGTTATTTTTTGCAGGAGCTATCCCTGTATTTTTTTCATTTTTTATTG  1402
                                                                                      
Sbjct  745  --------------------------------------------------------------------------  744

Query 1403  TAACTCTCCTATGCCATTATAATAATTGGGATCCTGTGATGGTGGGAATCAGAAGAATATTTGCTTTTATATGC  1476
                                                                                      
Sbjct  745  --------------------------------------------------------------------------  744

Query 1477  AGAAAACATCGAATTCAGAGAGTTCCAGAAGACAGCGAACAGTGTGAGAGTCTCATTTCTATGCACAGTGTTTC  1550
                                                                                      
Sbjct  745  --------------------------------------------------------------------------  744

Query 1551  TCAGGAGGATGGCGCTAGT  1569
                               
Sbjct  745  -------------------  744

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