Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_09022
Subject:
XR_001778392.1
Aligned Length:
2874
Identities:
1353
Gaps:
1333

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AGCCACAAGCCTGTTCAAGGCTGGCGTCCACACTACGGCAACAAGAACCAGGAAACGTGCCCTCCCCCGGTCCG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  AAGTCGCGTCCGGCGTGACGTAACCTGCGCGCCCGCAGTCTTTGGGCTAGGGGGCGGGGCCGCTGAAGCTGACT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GGACAGGGGCGGGGACTGCCGGGCTGTCTGGGGGGCGGGGCTCTGGGCAGACCACCCAGGCCTAGGGTATGGAT  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  TGTCAACTGGGGGAGGAGGCAGAATGGACGCCGGGTGGACGAACTGAGAGCTGAGCTTGACCGGTTGACTCACT  296

Query    1  ---------------------------------------------ATGGTGCCGCCACGACG----CCA----T  21
                                                         .|.|.|.|.|||.||.|    |||    .
Sbjct  297  GAGTGATGGGGAGGATGTCACCTAGTTGGTGGACAAGCTGGGGGCCTAGAGTCTCCAGGATGGGGTCCAGGGTA  370

Query   22  CGCGGGG--------------CAGGAAG----GCCAGGGGTGCTGAGTTCTTCACCTCCTTTTAGACTGAGATC  77
            |.|||.|              |.|||.|    ||||||.|.|||||||||||.||||||.|||.|||||.|.||
Sbjct  371  CCCGGAGCGGTTCCTGTCTACCGGGATGCGCTGCCAGGTGGGCTGAGTTCTTTACCTCCATTTGGACTGGGCTC  444

Query   78  TGCCAAGTTTTCCGGCATTGCTCTTGAGGATCTCAGAAGGGCTCTTAAGACAAGACTGCAAATGGTGTGTGTAT  151
            ||||...|||.|.||||||||..||||||||||||||...||.|||...|||||||||||||||||.|.|||.|
Sbjct  445  TGCCCGCTTTGCAGGCATTGCATTTGAGGATCTCAGAGAAGCCCTTGCAACAAGACTGCAAATGGTTTATGTGT  518

Query  152  TTGTCATGAACCGAATGAATTCCCAGAACAGTGGTTTCACTCAGCGCAGGCGAATGGCTCTTGGGATTGTTATT  225
            ||.||||||||||..||||||||||||.|||||||||||.||||||||||||||||||.||.|||||.||.|||
Sbjct  519  TTATCATGAACCGTGTGAATTCCCAGAGCAGTGGTTTCAGTCAGCGCAGGCGAATGGCCCTGGGGATAGTGATT  592

Query  226  CTTCTGCTTGTTGATGTGATATGGGTTGCTTCCTCTGAACTTACTTCGTATGTTTTTACCCAGTACAACAAACC  299
            ||.|||||.|||||||||||||||||.||.|||||.|||||.||.||||||||.||.||.|||||||||||.||
Sbjct  593  CTCCTGCTGGTTGATGTGATATGGGTGGCATCCTCAGAACTCACCTCGTATGTCTTCACGCAGTACAACAAGCC  666

Query  300  ATTCTTCAGCACCTTTGCAAAAACATCTATGTTTGTTTTGTACCTTTTGGGCTTTATTATTTGGAAGCCATGGA  373
            ||||||||||||||||||.||||||||.|||||||||.||||||||||||||||.||||||||||||||.||||
Sbjct  667  ATTCTTCAGCACCTTTGCGAAAACATCCATGTTTGTTCTGTACCTTTTGGGCTTCATTATTTGGAAGCCTTGGA  740

Query  374  GACAACAGTGTACAAGAGGACTTCGCGGAAAGCATGCTGCTTTTTTTGCAGATGCTGAAGGTTACTTTGCTGCT  447
            |.||||||||||||||||||.||.|.||.||||.|||||||||||||||||||||||||||||||||||||||.
Sbjct  741  GGCAACAGTGTACAAGAGGATTTAGAGGGAAGCCTGCTGCTTTTTTTGCAGATGCTGAAGGTTACTTTGCTGCG  814

Query  448  TGCACAACAGATACAACTATGAATAGTTCTTTGAGTGAACCTCTGTATGTGCCTGTGAAATTCCATGATCTTCC  521
            ||||||||||||||||..||||.|||||||||||||||||||||.|||||.||||||||.||.||||||||.||
Sbjct  815  TGCACAACAGATACAAGCATGAGTAGTTCTTTGAGTGAACCTCTTTATGTTCCTGTGAAGTTTCATGATCTCCC  888

Query  522  AAGTGAAAAACCTGAGAGCACAAACATTGATACTGAAAAAACCCCCAAAAAGTCTCGTGTGAGGTTCAGTAATA  595
            ||||||.||.|..||||||||||||||||..||.|||||.||.|||||.|||||.|||||.||||||||.||||
Sbjct  889  AAGTGAGAAGCTCGAGAGCACAAACATTGGGACCGAAAAGACTCCCAAGAAGTCCCGTGTAAGGTTCAGCAATA  962

Query  596  TCATGGAGATTCGACAGCTTCCGTCAAGTCATGCATTGGAAGCAAAGTTGTCTCGCATGTCATATC---CTGTG  666
            |||||||||||||.|||||.||.||.||.|||||.||.||.||.|||.|.|||||.|||||.||||   |||||
Sbjct  963  TCATGGAGATTCGCCAGCTCCCATCGAGCCATGCGTTAGAGGCCAAGCTCTCTCGGATGTCTTATCCCACTGTG  1036

Query  667  AAAGAACAAGAATCCATACTGAAAACTGTGGGGAAACTTACTGCAACTCAAGTAGCGAAAATTAGCTTTTTTTT  740
            |||||.|||||||||||||||||.|||||.||||||.|.||||||||.||||||||.|||||||||||||||||
Sbjct 1037  AAAGACCAAGAATCCATACTGAAGACTGTAGGGAAATTGACTGCAACCCAAGTAGCAAAAATTAGCTTTTTTTT  1110

Query  741  TTGCTTTGTGTGGTTTTTGGCAAATTTGTCATATCAAGAAGCACTTTCAGACACACAAGTTGCTATAGTTAATA  814
            |||||||||||||||||||||||||||||||||.|||||||||||||||||||||||.|||||.|||||.||||
Sbjct 1111  TTGCTTTGTGTGGTTTTTGGCAAATTTGTCATACCAAGAAGCACTTTCAGACACACAGGTTGCCATAGTGAATA  1184

Query  815  TTTTATCTTCAACTTCCGGACTTTTTACCTTAATCCTTGCTGCAGTATTTCCAAGTAACAGTGGAGATAGATTT  888
            ||||.|||||||||||.|||||||||||.|||||||||||.||.||||||||.||||||||.|||||.||.|||
Sbjct 1185  TTTTGTCTTCAACTTCTGGACTTTTTACTTTAATCCTTGCAGCTGTATTTCCGAGTAACAGCGGAGACAGGTTT  1258

Query  889  ACCCTTTCTAAACTATTAGCTGTAATTTTAAGCATTGGAGGCGTTGTACTGGTAAACCTGGCAGGGTCTGAAAA  962
            |||||.|||||||||||||||||||||||||||||||||||.||.||.|||||.||||||.|.|||||||||||
Sbjct 1259  ACCCTCTCTAAACTATTAGCTGTAATTTTAAGCATTGGAGGTGTGGTGCTGGTGAACCTGTCTGGGTCTGAAAA  1332

Query  963  ACCTGCTGGAAGAGACACAGTAGGTTCCATTTGGTCTCTTGCTGGAGCCATGCTCTATGCTGTCTATATTGTTA  1036
            ..|||||||||||||||||.||||||||||||||||.|||||||||||.|||.|||||||||||||.|||||.|
Sbjct 1333  GTCTGCTGGAAGAGACACAATAGGTTCCATTTGGTCCCTTGCTGGAGCTATGTTCTATGCTGTCTACATTGTGA  1406

Query 1037  TGATTAAGAGAAAAGTAGATAGAGAAGACAAGTTGGATATTCCAATGTTCTTTGGTTTTGTAGGTTTGTTTAAT  1110
            ||||.||||||||.|||||.||||||||.||.|||||||||||||||||||||||||||||||||.||||||||
Sbjct 1407  TGATCAAGAGAAAGGTAGACAGAGAAGATAAATTGGATATTCCAATGTTCTTTGGTTTTGTAGGTCTGTTTAAT  1480

Query 1111  CTGCTGCTCTTATGGCCAGGTTTCTTTTTACTTCATTATACTGGATTTGAGGACTTCGAGTTTCCCAATAAAGT  1184
            |||||||||.||||||||||.|||||.|||||.|||||||||||.|||||||||||.|||||||||||.|||||
Sbjct 1481  CTGCTGCTCCTATGGCCAGGGTTCTTCTTACTGCATTATACTGGCTTTGAGGACTTTGAGTTTCCCAACAAAGT  1554

Query 1185  AGTATTAATGTGCATTATCATTAATGGCCTTATTGGAACAGTACTCTCAGAGTTCCTGTGGTTGTGGGGCTGCT  1258
            .|||.|..||||.||.||.||.||.|||||.||.||||||||.||.||.|||||.||||||||.||||||||||
Sbjct 1555  GGTACTGTTGTGTATCATTATCAACGGCCTCATCGGAACAGTTCTGTCCGAGTTTCTGTGGTTATGGGGCTGCT  1628

Query 1259  TTCTTACCTCATCATTGATAGGCACACTTGCACTAAGCCTTACAATACCTCTGTCCATAATAGCTGACATGTGT  1332
            ||||||||||.||.|||||||||||||||||||||||||||||.||||||||.|||||.|||||.||||||||.
Sbjct 1629  TTCTTACCTCGTCGTTGATAGGCACACTTGCACTAAGCCTTACGATACCTCTCTCCATCATAGCCGACATGTGC  1702

Query 1333  ATGCAAAAGGTGCAGTTTTCTTGGTTATTTTTTGCAGGAGCTATCCCTGTATTTTTTTCATTTTTTATTGTAAC  1406
            |||||||                            |||.||||||||||||||||||||||||||||||||.||
Sbjct 1703  ATGCAAA----------------------------AGGCGCTATCCCTGTATTTTTTTCATTTTTTATTGTTAC  1748

Query 1407  TCTCCTATGCCATTATAATAATTGGGATCCTGTGATGGTGGGAATCAGAAGAATATTTGCTTTTATATGCAGAA  1480
            ||||||.||||||||||||||||||||||||||||||||.|||.||||||||.|.|||||.|||||||||||||
Sbjct 1749  TCTCCTGTGCCATTATAATAATTGGGATCCTGTGATGGTAGGAGTCAGAAGAGTTTTTGCCTTTATATGCAGAA  1822

Query 1481  AACATCGAATTCAGAGAGTTCCAGAAGACAGCGAACAGTGTGAGAGTCTCATTTCTATGCACAGTGTTTCTCAG  1554
            |||||||||||||||||||||||||||||||.||||||||.|||||.|||||||||||||||||.||||||||.
Sbjct 1823  AACATCGAATTCAGAGAGTTCCAGAAGACAGTGAACAGTGCGAGAGCCTCATTTCTATGCACAGCGTTTCTCAA  1896

Query 1555  GAGGATGGCGCTAGT-----------------------------------------------------------  1569
            ||||||||.||||.|                                                           
Sbjct 1897  GAGGATGGAGCTACTTAGCTGCTGTGGTCTGCAGTCCAGCTTAATGGAACATTGTACAGTGAAGAGACGACCTG  1970

Query 1570  --------------------------------------------------------------------------  1569
                                                                                      
Sbjct 1971  GCAAGTTCTTTGTAGACGTGTTTCAGTGCCTCGTCTGAACAGGAGCCGTTTCACTTCTTTGAAACTCTACATTT  2044

Query 1570  --------------------------------------------------------------------------  1569
                                                                                      
Sbjct 2045  TCCACACGTCTGCTTCATTTTCAAAATGAAGGATGTTTCCCGTAGGTTTTGTGCAGTCCAGTTGCCCTAAAGGA  2118

Query 1570  --------------------------------------------------------------------------  1569
                                                                                      
Sbjct 2119  CCAACCTGCCTTACGTATCAGTTTAGTTCCTGAAATCAGTGGAACTATTCAAGGGACGGAACTCCTCTGGAGAC  2192

Query 1570  --------------------------------------------------------------------------  1569
                                                                                      
Sbjct 2193  TCTGTTTAAACATACTTTTCAGTTCCCGAGAGACCACCTAAGTAAGATGACATTTCTGACAGGCGGGTGCCAGT  2266

Query 1570  --------------------------------------------------------------------------  1569
                                                                                      
Sbjct 2267  CTGCACTGCCCGCAGTGAGTGCAGGTTCTGTTTTTGAGTTTGGTAGTTTGCAAAGTGAGTACACTGAAGAAACG  2340

Query 1570  --------------------------------------------------------------------------  1569
                                                                                      
Sbjct 2341  TTAGTTAGTGGGGCAATACATTCATGCAAGGTTGGTGGCGCCTTAGAGATGGGCGAGTGTCTGAGAAGACCTGC  2414

Query 1570  --------------------------------------------------------------------------  1569
                                                                                      
Sbjct 2415  TCGGAGCACACTGCACTCTTTGATCCTCCCTGGTGTCTGGTGCCTTCTATCTTAAAAAACATGACAAGTCATAA  2488

Query 1570  --------------------------------------------------------------------------  1569
                                                                                      
Sbjct 2489  CAGTTTTAAAGGGAAGACTTGTAAACTGGAAAATCATGTATTTCTAAAGGCTGTGTACCTATAAATTAGTTGAG  2562

Query 1570  --------------------------------------------------------------------------  1569
                                                                                      
Sbjct 2563  AAAGCTCTGTTTCATTTAGAGTTTTAAAGGAATATTCTCTCTTCAATTAAGGAATTTTCATAATGGAATGGTTT  2636

Query 1570  --------------------------------------------------------------------------  1569
                                                                                      
Sbjct 2637  AAATTGAAGTGATAAAGAATATTATTAGAATAAAATGTTTGTATATGTATTTGTGTATTAAAGATGTATTGAGT  2710

Query 1570  --------------------------------------------------------------------------  1569
                                                                                      
Sbjct 2711  AATTTTGTATTTTTTACATATAAATGTGCTAAATTACTCTAAAACTGGGTGCTGCTTCCTTAAGTAATCTTACT  2784

Query 1570  --------------------------------------------------------------  1569
                                                                          
Sbjct 2785  TTTCCTAAGTAAATTTAAATGCTTAAAATAAAAAAAAAAAAAAGAAAGGCAAGGAAAAACTC  2846

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