Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_09043
Subject:
XR_001740304.1
Aligned Length:
2399
Identities:
1289
Gaps:
1080

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AAGAAAGGTAAGGGCCCTGGGCGAGGAAAGCGCGGCCCTTTCCGAGTTTGGTGTTTTGCAGCGAAAGGAAATCT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CGCTCTTCCGAAAGTCCTCCAGGGCGAGAGAGGAAAGGGCCTAGGTACTGTGCTGGGGTCGCACAGCCGGCCGA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GACAGTGCCGGGACGGGGAGCCAGGCTTCCGAGTGCGCCCGGTCACTGACTCCTCCGCGCTTTCCTCGTGCGCC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  TGCAGCCCTTGGTTCTTGGAAACGCCGGCGCCTTGTTCAGGGCTGGTGGGGCTGGGGCGCAAGGTGCAGCTGAC  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  AATGCCCGAGAGGAGCCGCAGCCTCTGGTGGAGTTCGGTCGGGTGTGGGGGTAGTCAAGGAAAGAAGCAAAGGG  370

Query    1  -----------------ATGGCAGAAGCTGTTTTCCATGCCCCAAAGAGGAAAAGAAGAGTGTATGAGACTTAC  57
                             |||||||||||.|||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  AATACCTCCTCTGAAAAATGGCAGAAGCAGTTTTCCATGCCCCAAAGAGGAAAAGAAGAGTGTATGAGACTTAC  444

Query   58  GAGTCTCCATTGCCAATCCCTTTTGGTCAGGACCATGGTCCTCTGAAAGAATTCAAGATATTCCGTGCTGAAAT  131
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  GAGTCTCCATTGCCAATCCCTTTTGGTCAGGACCATGGTCCTCTGAAAGAATTCAAGATATTCCGTGCTGAAAT  518

Query  132  GATTAACAACAATGTGATTGTGAGGAATGCGGAGGACATTGAGCAGCTCTATGGGAAAGGTTATTTTGGAAAAG  205
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  GATTAACAACAATGTGATTGTGAGGAATGCGGAGGACATTGAGCAGCTCTATGGGAAAGGTTATTTTGGAAAAG  592

Query  206  GTATTCTTTCAAGAAGCCGTCCAAGCTTCACAATTTCAGATCCTAAACTGGTTGCTAAATGGAAAGATATGAAG  279
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  GTATTCTTTCAAGAAGCCGTCCAAGCTTCACAATTTCAGATCCTAAACTGGTTGCTAAATGGAAAGATATGAAG  666

Query  280  ACAAACATGCCTATCATCACATCAAAGAGGTATCAGCATAGTGTTGAGTGGGCAGCAGAGCTGATGCGTAGACA  353
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  ACAAACATGCCTATCATCACATCAAAGAGGTATCAGCATAGTGTTGAGTGGGCAGCAGAGCTGATGCGTAGACA  740

Query  354  GGGGCAGGATGAGAGTACAGTGCGCAGAATCCTCAAGGATTACACGAAACCGCTTGAGCATCCTCCTGTGAAAA  427
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  GGGGCAGGATGAGAGTACAGTGCGCAGAATCCTCAAGGATTACACGAAACCGCTTGAGCATCCTCCTGTGAAAA  814

Query  428  GGAATGAAGAGGCTCAAGTGCATGACAAGCTTAACTCTGGAATGGTTTCCAACATGGAAGGCACAGCAGGGGGA  501
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  GGAATGAAGAGGCTCAAGTGCATGACAAGCTTAACTCTGGAATGGTTTCCAACATGGAAGGCACAGCAGGGGGA  888

Query  502  GAGAGACCTTCTGTGGTAAACGGGGACTCTGGAAAGTCAGGTGGTGTGGGTGATCCCCGTGAGCCATTAGGCTG  575
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  GAGAGACCTTCTGTGGTAAACGGGGACTCTGGAAAGTCAGGTGGTGTGGGTGATCCCCGTGAGCCATTAGGCTG  962

Query  576  CCTGCAGGAGGGCTCTGGCTGCCACCCAACAACAGAGAGCTTTGAGAAAAGCGTGCGAGAGGATGCCTCACCTC  649
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  CCTGCAGGAGGGCTCTGGCTGCCACCCAACAACAGAGAGCTTTGAGAAAAGCGTGCGAGAGGATGCCTCACCTC  1036

Query  650  TGCCCCATGTCTGTTGCTGCAAACAAGATGCTCTCATCCTCCAGCGTGGCCTTCATCATGAAGACGGCAGCCAG  723
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  TGCCCCATGTCTGTTGCTGCAAACAAGATGCTCTCATCCTCCAGCGTGGCCTTCATCATGAAGACGGCAGCCAG  1110

Query  724  CACATCGGCCTCCTGCATCCTGGGGACAGAGGGCCTGACCATGAGTACGTGCTGGTCGAGGAAGCGGAGTGTGC  797
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  CACATCGGCCTCCTGCATCCTGGGGACAGAGGGCCTGACCATGAGTACGTGCTGGTCGAGGAAGCGGAGTGTGC  1184

Query  798  CATGAGCGAGAGGGAGGCTGCCCCAAATGAGGAATTGGTGCAAAGAAACAGGTTAATATGCAGAAGAAATCCAT  871
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  CATGAGCGAGAGGGAGGCTGCCCCAAATGAGGAATTGGTGCAAAGAAACAGGTTAATATGCAGAAGAAATCCAT  1258

Query  872  ATAGGATCTTTGAGTATTTGCAACTCAGCCTAGAAGAGGCCTTTTTCTTGGTCTATGCTCTGGGATGTTTAA-G  944
            ||||||||||||||||||||||||||||||||||||||                 |||.|...||     || |
Sbjct 1259  ATAGGATCTTTGAGTATTTGCAACTCAGCCTAGAAGAG-----------------TGCACACAGA-----AATG  1310

Query  945  TATTTACTATGAGAAGGAGCCTTTAACGATAGTGAAGCTCTGGAAAGCTTTCACTGTAGTTCAGCCCACGTT--  1016
            |.|||.||          |||||         ||||||| .|||..||||   ||...|.||  |||.| ||  
Sbjct 1311  TCTTTTCT----------GCCTT---------TGAAGCT-AGGACCGCTT---CTTGGGCTC--CCCTC-TTCT  1358

Query 1017  -CAGAACCACCTACATGGCCTACCATTACTTTCGA-------AGCAAGGGCTGGGTGCCCAAAGTGGGACT---  1079
             |||.|.|.|....|||||      ||.|||| ||       .|||        |||.|||..||||..||   
Sbjct 1359  CCAGGAGCTCTGTGATGGC------TTTCTTT-GATAGTTCCTGCA--------GTGTCCAGTGTGGTTCTTGG  1417

Query 1080  CAAGTACGGGACAGATTTACTGCTATATCGGAAAGGCCCTCCATTTTACCATGCAAGTTATTCTGTCATTATCG  1153
            ||  |||           |.||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1418  CA--TAC-----------AGTGCTATATCGGAAAGGCCCTCCATTTTACCATGCAAGTTATTCTGTCATTATCG  1478

Query 1154  AGCTAGTTGATGACCATTTTGAAGGCTCTCTCCGCAGGCCTCTCAGTTGGAAGTCCCTGGCTGCCTTGAGCAGA  1227
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1479  AGCTAGTTGATGACCATTTTGAAGGCTCTCTCCGCAGGCCTCTCAGTTGGAAGTCCCTGGCTGCCTTGAGCAGA  1552

Query 1228  GTTTCCGTTAATGTCTCTAAGGAACTTATGCTGTGCTATTTGATTAAACCCTCTACTATGACTGACAAGGAAAT  1301
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1553  GTTTCCGTTAATGTCTCTAAGGAACTTATGCTGTGCTATTTGATTAAACCCTCTACTATGACTGACAAGGAAAT  1626

Query 1302  GGAGTCACCAGAATGTATGAAAAGGATTAAAGTTCAGGAGGTGATTCTGAGTCGATGGGTTTCTTCACGAGAGA  1375
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1627  GGAGTCACCAGAATGTATGAAAAGGATTAAAGTTCAGGAGGTGATTCTGAGTCGATGGGTTTCTTCACGAGAGA  1700

Query 1376  GGAGTGACCAAGACGATCTT------------------------------------------------------  1395
            ||||||||||||||||||||                                                      
Sbjct 1701  GGAGTGACCAAGACGATCTTTAACAATTCAACCTCAAATTTCTAATTTCACCAACAACTATTTATTGAGGGCTA  1774

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 1775  GGTAAAAAGTTCTTTTTGTTGTAATCGTCCATTAATTCATAAGTTTTAAAGGGCATGGTGCTCCCAGCACCAGA  1848

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 1849  AAACTATCAGTGTTTTTAAAGATAAATTACACAAGGGAGGAGAAAGATCCCTGTGCTAGGACTGCAGATTCTAT  1922

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 1923  ACTTGCGTTGGCCTCTAACTCTCCAATCCAGAGCCTCCTGCCTCTGGCGTCAGTCTTTTCCCTCATCCACTCAC  1996

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 1997  TGGGGAGATTGGACTAGAGGAGTCCTGAGAGGACACTTCCAACAAGAGACATTTATTCTCTGATTTTACCTGAA  2070

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2071  AATGGTAGTAGTTTACATTTATACAGTACAGTTTATGAAGCACTTTCATACGCAGGCATCTCTTGTTACCTACA  2144

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2145  TCTAAGCTGTTCCCGAAAGAGTGTTACAGAACACAACAGTATTGTACAATATTCGATAAGCATATCTTCACTGC  2218

Query 1396  --------------------------------------------------------------------------  1395
                                                                                      
Sbjct 2219  ACTTGTTATAAAAATGAGTGGTGAAATAATGTTTGGAGACATAATGAAAGCGATTAACATTTGGCAAAATATAA  2292

Query 1396  -------------------------------  1395
                                           
Sbjct 2293  TAAAGCCTTTTTGTAATTGGTGAGAAAGTCA  2323

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