Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_09451
Subject:
NR_110211.1
Aligned Length:
4214
Identities:
1371
Gaps:
2840

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GTAGTGATGTCATATCCGTTGTCCAGGTCTCCACACCTCTCTCAGCAGTTAATCCCTTTATCTATTCCTTGGGT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CAAAACTTTTGAGGTGGGCTAGCTATATAGCAGCGGGGGAGAGGGTAAACTGGGGCGCGCGGGTTGGAGGCGCT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  TCAGCACCGCGGCCAGCGCCCACTGCAGCCCAACCCACTCTCTAGAGCTCCCGGACTCCTAGCTCTGAGAATGC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  CTGCGGAATGATCGCCCCCCAGGGCGGCTGCCGCCGCTGCCGCTGCTGCTGTTATTGCTACTGCTGCTGCCGCC  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GCCTCTGCTTCCACTCGGCTCTGACTGGCAGGCAGAAAGTGCAACTGACGAGGGAAAGGTCTCTGCAGTGAGTG  370

Query    1  ------------------------------------------------ATGCAGGCGACGTCCAACCTTCTCAA  26
                                                            ||||||||||||||||||||||||||
Sbjct  371  GAGAGCCTACATAAAAGAGAGTAAAGAGGGGCAAAAACCCAGATCAGAATGCAGGCGACGTCCAACCTTCTCAA  444

Query   27  CCTCCTGCTGCTGTCTTTGTTTGCCGGATTAGATCCTTCCAAGACTCAGATTAGTCCTAAAGAAGGGTGGCAGG  100
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  CCTCCTGCTGCTGTCTTTGTTTGCCGGATTAGATCCTTCCAAGACTCAGATTAGTCCTAAAGAAGGGTGGCAGG  518

Query  101  TGTACAGCTCAGCTCAGGATCCTGATGGGCGGTGCATTTGTACAGTTGTTGCTCCAGAACAAAACCTGTGTTCC  174
            ||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||
Sbjct  519  TGTACAGCTCAGCTCAGGATCCTGATGGGCGGTGCATTTGCACAGTTGTTGCTCCAGAACAAAACCTGTGTTCC  592

Query  175  CGGGATGCCAAAAGCAGGCAACTTCGCAAACTACTGGAAAAGGTTCAGAACATGTCCCAGTCTATTGAAGTCTT  248
            |||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  CGGGATGCCAAAAGCAGGCAACTTCGCCAACTACTGGAAAAGGTTCAGAACATGTCCCAGTCTATTGAAGTCTT  666

Query  249  AAACTTGAGAACTCAGAGAGATTTCCAATATGTTTTAAAAATGGAAACCCAAATGAAAGGGCTGAAGGCAAAAT  322
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  AAACTTGAGAACTCAGAGAGATTTCCAATATGTTTTAAAAATGGAAACCCAAATGAAAGGGCTGAAGGCAAAAT  740

Query  323  TTCGGCAGATTGAAGATGATCGAAAGACACTTATGACCAAGCATTTTCAGGAGTTGAAAGAGAAAATGGACGAG  396
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  TTCGGCAGATTGAAGATGATCGAAAGACACTTATGACCAAGCATTTTCAGGAGTTGAAAGAGAAAATGGACGAG  814

Query  397  CTCCTGCCTTTGATCCCCGTGCTGGAACAGTACAAAACAGATGCTAAGTTAATCACCCAGTTCAAGGAGGAAAT  470
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  CTCCTGCCTTTGATCCCCGTGCTGGAACAGTACAAAACAGATGCTAAGTTAATCACCCAGTTCAAGGAGGAAAT  888

Query  471  AAGGAATCTGTCTGCTGTCCTCACTGGTATTCAGGAGGAAATTGGTGCCTATGACTACGAGGAACTACACCAAA  544
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  AAGGAATCTGTCTGCTGTCCTCACTGGTATTCAGGAGGAAATTGGTGCCTATGACTACGAGGAACTACACCAAA  962

Query  545  GAGTGCTGAGCTTGGAAACAAGACTTCGTGACTGCATGAAAAAGCTAA--------------------------  592
            ||||||||||||||||||||||||||||||||||||||||||||||||                          
Sbjct  963  GAGTGCTGAGCTTGGAAACAAGACTTCGTGACTGCATGAAAAAGCTAATTGATTTAAAAAAGAGAAAAGAAGAA  1036

Query  593  --------------------------------------------------------------------------  592
                                                                                      
Sbjct 1037  GAAAAAAGGCAACAGAAAGGAGAAGCATAAGCAATAGTATTTTGGGAAGCTATAACACGCGACTTGCCTCCCTG  1110

Query  593  --------------------------------------------------------------------------  592
                                                                                      
Sbjct 1111  TTCACCTTTGTATTCTCAGCACCTAGAATAGTTCTGGTACAAAATAAGTTCACAGTAAATGGTTGTCAAATGAA  1184

Query  593  --------------------------------------------------------------------------  592
                                                                                      
Sbjct 1185  TAAATTAATTATTATATCTTTAAATAGTAACTATTGTTTTTACCCTCTAACATATTTCAGAGAAATGCTTAGTG  1258

Query  593  --------------------------------------------------------------------------  592
                                                                                      
Sbjct 1259  CTACAAGAAAGTAAAGTTTGCTTTCTAAGGTATGATTGACTGGAGTAAGAATCAATTTTCCTCACAAAACCAGG  1332

Query  593  --------------------------------------------------------------------------  592
                                                                                      
Sbjct 1333  TACAAAATAAAAGAGTCAACTAGCCAAAAGACCACTTTACCATGGTCACCCAATGTTTAGTTTAAGAGCCAGAA  1406

Query  593  --------------------------------------------------------------------------  592
                                                                                      
Sbjct 1407  GCTTTTAACCTCCGGTACAAATTCTGTCCTAAGTTTTGGCCGAAACAACCTAAGACTCAGCAGTATCCCTTTGC  1480

Query  593  --------------------------------------------------------------------------  592
                                                                                      
Sbjct 1481  CATAGAGATGCAAGGCTGGATTAGATTCAAGCACCATCGAAGCCAAAGACACCCCAAGCCAGTGATGTGCTGTG  1554

Query  593  --------------------------------------------------------------------------  592
                                                                                      
Sbjct 1555  GGTTGTTTGGAAATGTCGATTAGATAAGGCTCATGGTATGATTCAGAGCTCCAAGGACAGTTCTTGTTCAGGTT  1628

Query  593  --------------------------------------------------------------------------  592
                                                                                      
Sbjct 1629  TCAACTAATCAACATCGGATTATGCACACCTCAACATCTGAAATATGCAGACATTTGAGACAAATACCAGAATT  1702

Query  593  ---------------------------------------------CATGTGGCAAACTGATGAAAATCACAGGC  621
                                                         |||||||||||||||||||||||||||||
Sbjct 1703  GTGTCTTCTTGCTTTGTACAAATCATGCTTCAGTCTGGCAATAAGCATGTGGCAAACTGATGAAAATCACAGGC  1776

Query  622  CCAGTTACAGTCAAGACATCTGGAACCCGATTTGGTGCTTGGATGACAGACCCTTTAGCATCTGAGAAAAACAA  695
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777  CCAGTTACAGTCAAGACATCTGGAACCCGATTTGGTGCTTGGATGACAGACCCTTTAGCATCTGAGAAAAACAA  1850

Query  696  CAGAGTCTGGTACATGGACAGTTATACTAACAATAAAATTGTTCGTGAATACAAATCAATTGCAGACTTTGTCA  769
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851  CAGAGTCTGGTACATGGACAGTTATACTAACAATAAAATTGTTCGTGAATACAAATCAATTGCAGACTTTGTCA  1924

Query  770  GTGGGGCTGAATCAAGGACATACAACCTTCCTTTCAAGTGGGCAGGAACTAACCATGTTGTCTACAATGGCTCA  843
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925  GTGGGGCTGAATCAAGGACATACAACCTTCCTTTCAAGTGGGCAGGAACTAACCATGTTGTCTACAATGGCTCA  1998

Query  844  CTCTATTTTAACAAGTATCAGAGTAATATCATCATCAAATACAGCTTTGATATGGGGAGAGTGCTTGCCCAACG  917
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999  CTCTATTTTAACAAGTATCAGAGTAATATCATCATCAAATACAGCTTTGATATGGGGAGAGTGCTTGCCCAACG  2072

Query  918  AAGCCTGGAGTATGCTGGTTTTCATAATGTTTACCCCTACACATGGGGTGGATTCTCTGACATCGACCTAATGG  991
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073  AAGCCTGGAGTATGCTGGTTTTCATAATGTTTACCCCTACACATGGGGTGGATTCTCTGACATCGACCTAATGG  2146

Query  992  CTGATGAAATCGGGCTGTGGGCTGTGTATGCAACTAACCAGAATGCAGGCAATATTGTCATCAGCCAACTTAAC  1065
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2147  CTGATGAAATCGGGCTGTGGGCTGTGTATGCAACTAACCAGAATGCAGGCAATATTGTCATCAGCCAACTTAAC  2220

Query 1066  CAAGATACCTTGGAGGTGATGAAGAGCTGGAGCACTGGCTACCCCAAGAGAAGTGCAGGGGAATCTTTCATGAT  1139
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2221  CAAGATACCTTGGAGGTGATGAAGAGCTGGAGCACTGGCTACCCCAAGAGAAGTGCAGGGGAATCTTTCATGAT  2294

Query 1140  CTGTGGGACACTGTATGTCACCAACTCCCACTTAACTGGAGCCAAGGTGTATTATTCCTATTCCACCAAAACCT  1213
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2295  CTGTGGGACACTGTATGTCACCAACTCCCACTTAACTGGAGCCAAGGTGTATTATTCCTATTCCACCAAAACCT  2368

Query 1214  CCACATATGAGTACACAGACATTCCCTTCCATAACCAATACTTTCACATATCCATGCTTGACTACAATGCAAGA  1287
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2369  CCACATATGAGTACACAGACATTCCCTTCCATAACCAATACTTTCACATATCCATGCTTGACTACAATGCAAGA  2442

Query 1288  GATCGAGCTCTCTGTGCCTGGAACAATGGCCACCAGGTGCTGTTCAATGTCACCCTTTTCCATATCATCAAGAC  1361
            |||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2443  GATCGAGCTCTCTATGCCTGGAACAATGGCCACCAGGTGCTGTTCAATGTCACCCTTTTCCATATCATCAAGAC  2516

Query 1362  AGAGGATGACACA-------------------------------------------------------------  1374
            |||||||||||||                                                             
Sbjct 2517  AGAGGATGACACATAGGCAAATGTGACATGTTTTCATTGATTTAAACAGTGTGATTTGTGATAAACTCTATAAG  2590

Query 1375  --------------------------------------------------------------------------  1374
                                                                                      
Sbjct 2591  ACCCCTTCCGTTTTTTTCTTCACTATTATTTTTCATCATTTCTCCAAAGCAAAGCATTTTTATTGTAAAGTTGG  2664

Query 1375  --------------------------------------------------------------------------  1374
                                                                                      
Sbjct 2665  TGTTTCAAAAACATAGCTGAGCTTGTCTAACTTACCATGTTGGAAACACATCTTAACTTCTAAATTTACAAGGC  2738

Query 1375  --------------------------------------------------------------------------  1374
                                                                                      
Sbjct 2739  CTATCATGTCCTTGTCATGAAAAGCACTAAAAAAAAAAAGAGTTTAAGTGGCTAAAGTCATAGTTTTGCAAGAG  2812

Query 1375  --------------------------------------------------------------------------  1374
                                                                                      
Sbjct 2813  ATTAATGATCTGCCTTATATTAGAGTCAGAGACTAATGGTGGCTTAAATGCACGAATGTCTTTTTTTTTAAAAC  2886

Query 1375  --------------------------------------------------------------------------  1374
                                                                                      
Sbjct 2887  TGTCATTTTTTACTGTCTTTTGCTCCATATCAGGAAATATTTTGGTAGGAATTAGGAGAACAAAAAGCACTTTT  2960

Query 1375  --------------------------------------------------------------------------  1374
                                                                                      
Sbjct 2961  ATCCCATTTATTTCTTTAAAAAATGTAAGGATTTCATTTATATTGAAAAATAATATTAATCATTTTGCTGTTAA  3034

Query 1375  --------------------------------------------------------------------------  1374
                                                                                      
Sbjct 3035  CACAATTCTCTGATGCGGTGCTGTACAGTCATTTTTAAATCTCTTGCTAACATTTTATTGGCAGTATGTATTTC  3108

Query 1375  --------------------------------------------------------------------------  1374
                                                                                      
Sbjct 3109  TACCATTGTAACCACCATTGTGCTATTGTATCTCTTCACTTCTGTGAAAGTAATATTTTTTATAAAATACACTG  3182

Query 1375  --------------------------------------------------------------------------  1374
                                                                                      
Sbjct 3183  AAATTTAACCTCAGTAATTGAGTCCATTTTCAAGTGTGGTCAAGAATAATCTTCTTGGCTTACCCCTTTACATA  3256

Query 1375  --------------------------------------------------------------------------  1374
                                                                                      
Sbjct 3257  AGCATTATAAACTAAAATGAAAACCAAACCAGACACCTGACATAGAGTCTTTATTTTACCCCAAGTTTTTTGGG  3330

Query 1375  --------------------------------------------------------------------------  1374
                                                                                      
Sbjct 3331  CCACTGACATTGAATGCAACAACTGATTTCATACAACTGAGTTACTCTGTTCACTCCACTGAATGCAACCCATA  3404

Query 1375  --------------------------------------------------------------------------  1374
                                                                                      
Sbjct 3405  TAGTTTCTTGCACAAGGTGCATCTGGATTCCAAATATTGGATTTGAGTTGACTCTACTCATTTATTATACACTA  3478

Query 1375  --------------------------------------------------------------------------  1374
                                                                                      
Sbjct 3479  AAGAAATTTTGTTCTTCATAGTTAAATGTACTAGCATTTAATTTATATTTTACATACAACTTGCAATAATGAAA  3552

Query 1375  --------------------------------------------------------------------------  1374
                                                                                      
Sbjct 3553  TTCCTTATGTCAGGACCCTGAAAATAAGCACATTTGAAAACTCTTAGAAAAAAAAAATTCTGTAATGTCCTCTA  3626

Query 1375  --------------------------------------------------------------------------  1374
                                                                                      
Sbjct 3627  GATTTAGATTATGAGCCCTGAGGAGTTATTGGCAAGATTTGTGCAAAATAAAATATGGGGAGACTTGGGAGTTG  3700

Query 1375  --------------------------------------------------------------------------  1374
                                                                                      
Sbjct 3701  TCTTTGTGGTTTCAAAAGTGTAAATAACCAATTCAGAAAACAAAATGGAAAAACGACCCCTTGTTACCTTGATT  3774

Query 1375  --------------------------------------------------------------------------  1374
                                                                                      
Sbjct 3775  CACTGTATGTGGAAAAATAATGTAACCAAAAGGGAAGAGCTTTAATAATACTTATGTTAATAACTCTATGAAAC  3848

Query 1375  --------------------------------------------------------------------------  1374
                                                                                      
Sbjct 3849  ATATAAGCTAACTATATATCAAACATTTCATTGAGTTTGGATGTATTTTCCACATATTAAAAAAATAGTTCCCT  3922

Query 1375  --------------------------------------------------------------------------  1374
                                                                                      
Sbjct 3923  AAGGCAGCTTTATGGAAACTAATATAGGTTGGTTTTACAATTTAAAAAGTATATTCTATAATAAATAATAAAAC  3996

Query 1375  --------------------------------------------------------------------------  1374
                                                                                      
Sbjct 3997  AAATTGTTTTAAATGTTTAGTTTCACACATACATAGTACCATGATTTTCTTTGAAAGATAAGGATGTAATGATT  4070

Query 1375  --------------------------------------------------------------------------  1374
                                                                                      
Sbjct 4071  TAGATAAAGCATCATGTAAAGAAATCCTAACATTTAAGTGTAATTCATTTCAAATGTCACAAGTAAAGCATCAT  4144

Query 1375  ----------------------------------------------------------------------  1374
                                                                                  
Sbjct 4145  CCTCAAATATCTCACTGTCAAAATTGTAGAATTAAATAACCCAATCTTGAAACTGTCAAAAAAAAAAAAA  4214

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