Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_09451
Subject:
NR_110212.1
Aligned Length:
3980
Identities:
1344
Gaps:
2623

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATCTCTTTTCATGCTGTAGATGTGGCGCGCTGCAGTCACGCCTCCCGCTGCCAGCCCGGCACCGGGATCTTAAT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CAGTCACTATGAAAACTCATTAGCTCCACAGCAATGAGTCCTCCACTGCTGAAGCTTGGCGCTGTGCTTAGTAC  148

Query    1  -------ATG----CAGGC--GACGTCC--AACCTTCTCAACCTCCTGCT------------------GCTGTC  41
                   |||    ||..|  ||.||||  |||..||.||.|||  ||.|                  ||||||
Sbjct  149  CATGGCAATGATCTCAAACTGGATGTCCCAAACTCTCCCATCCT--TGGTGGGACTGAACACCACGAGGCTGTC  220

Query   42  TTTGTTTG---CCGGATTAGATCCTTCCAAGACTCAGATTAGTCCTAAAGAAGGGTGGCAGGTGTACAGCTCAG  112
                   |   ||||||    .||||    .|||||||||||||||||||||||||||||||||||||||||||
Sbjct  221  -------GACTCCGGAT----ACCTT----AACTCAGATTAGTCCTAAAGAAGGGTGGCAGGTGTACAGCTCAG  279

Query  113  CTCAGGATCCTGATGGGCGGTGCATTTGTACAGTTGTTGCTCCAGAACAAAACCTGTGTTCCCGGGATGCCAAA  186
            ||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||
Sbjct  280  CTCAGGATCCTGATGGGCGGTGCATTTGCACAGTTGTTGCTCCAGAACAAAACCTGTGTTCCCGGGATGCCAAA  353

Query  187  AGCAGGCAACTTCGCAAACTACTGGAAAAGGTTCAGAACATGTCCCAGTCTATTGAAGTCTTAAACTTGAGAAC  260
            |||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  354  AGCAGGCAACTTCGCCAACTACTGGAAAAGGTTCAGAACATGTCCCAGTCTATTGAAGTCTTAAACTTGAGAAC  427

Query  261  TCAGAGAGATTTCCAATATGTTTTAAAAATGGAAACCCAAATGAAAGGGCTGAAGGCAAAATTTCGGCAGATTG  334
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  428  TCAGAGAGATTTCCAATATGTTTTAAAAATGGAAACCCAAATGAAAGGGCTGAAGGCAAAATTTCGGCAGATTG  501

Query  335  AAGATGATCGAAAGACACTTATGACCAAGCATTTTCAGGAGTTGAAAGAGAAAATGGACGAGCTCCTGCCTTTG  408
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  502  AAGATGATCGAAAGACACTTATGACCAAGCATTTTCAGGAGTTGAAAGAGAAAATGGACGAGCTCCTGCCTTTG  575

Query  409  ATCCCCGTGCTGGAACAGTACAAAACAGATGCTAAGTTAATCACCCAGTTCAAGGAGGAAATAAGGAATCTGTC  482
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  576  ATCCCCGTGCTGGAACAGTACAAAACAGATGCTAAGTTAATCACCCAGTTCAAGGAGGAAATAAGGAATCTGTC  649

Query  483  TGCTGTCCTCACTGGTATTCAGGAGGAAATTGGTGCCTATGACTACGAGGAACTACACCAAAGAGTGCTGAGCT  556
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  650  TGCTGTCCTCACTGGTATTCAGGAGGAAATTGGTGCCTATGACTACGAGGAACTACACCAAAGAGTGCTGAGCT  723

Query  557  TGGAAACAAGACTTCGTGACTGCATGAAAAAGCTAA--------------------------------------  592
            ||||||||||||||||||||||||||||||||||||                                      
Sbjct  724  TGGAAACAAGACTTCGTGACTGCATGAAAAAGCTAATTGATTTAAAAAAGAGAAAAGAAGAAGAAAAAAGGCAA  797

Query  593  --------------------------------------------------------------------------  592
                                                                                      
Sbjct  798  CAGAAAGGAGAAGCATAAGCAATAGTATTTTGGGAAGCTATAACACGCGACTTGCCTCCCTGTTCACCTTTGTA  871

Query  593  --------------------------------------------------------------------------  592
                                                                                      
Sbjct  872  TTCTCAGCACCTAGAATAGTTCTGGTACAAAATAAGTTCACAGTAAATGGTTGTCAAATGAATAAATTAATTAT  945

Query  593  --------------------------------------------------------------------------  592
                                                                                      
Sbjct  946  TATATCTTTAAATAGTAACTATTGTTTTTACCCTCTAACATATTTCAGAGAAATGCTTAGTGCTACAAGAAAGT  1019

Query  593  --------------------------------------------------------------------------  592
                                                                                      
Sbjct 1020  AAAGTTTGCTTTCTAAGGTATGATTGACTGGAGTAAGAATCAATTTTCCTCACAAAACCAGGTACAAAATAAAA  1093

Query  593  --------------------------------------------------------------------------  592
                                                                                      
Sbjct 1094  GAGTCAACTAGCCAAAAGACCACTTTACCATGGTCACCCAATGTTTAGTTTAAGAGCCAGAAGCTTTTAACCTC  1167

Query  593  --------------------------------------------------------------------------  592
                                                                                      
Sbjct 1168  CGGTACAAATTCTGTCCTAAGTTTTGGCCGAAACAACCTAAGACTCAGCAGTATCCCTTTGCCATAGAGATGCA  1241

Query  593  --------------------------------------------------------------------------  592
                                                                                      
Sbjct 1242  AGGCTGGATTAGATTCAAGCACCATCGAAGCCAAAGACACCCCAAGCCAGTGATGTGCTGTGGGTTGTTTGGAA  1315

Query  593  --------------------------------------------------------------------------  592
                                                                                      
Sbjct 1316  ATGTCGATTAGATAAGGCTCATGGTATGATTCAGAGCTCCAAGGACAGTTCTTGTTCAGGTTTCAACTAATCAA  1389

Query  593  --------------------------------------------------------------------------  592
                                                                                      
Sbjct 1390  CATCGGATTATGCACACCTCAACATCTGAAATATGCAGACATTTGAGACAAATACCAGAATTGTGTCTTCTTGC  1463

Query  593  ---------------------------------CATGTGGCAAACTGATGAAAATCACAGGCCCAGTTACAGTC  633
                                             |||||||||||||||||||||||||||||||||||||||||
Sbjct 1464  TTTGTACAAATCATGCTTCAGTCTGGCAATAAGCATGTGGCAAACTGATGAAAATCACAGGCCCAGTTACAGTC  1537

Query  634  AAGACATCTGGAACCCGATTTGGTGCTTGGATGACAGACCCTTTAGCATCTGAGAAAAACAACAGAGTCTGGTA  707
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1538  AAGACATCTGGAACCCGATTTGGTGCTTGGATGACAGACCCTTTAGCATCTGAGAAAAACAACAGAGTCTGGTA  1611

Query  708  CATGGACAGTTATACTAACAATAAAATTGTTCGTGAATACAAATCAATTGCAGACTTTGTCAGTGGGGCTGAAT  781
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1612  CATGGACAGTTATACTAACAATAAAATTGTTCGTGAATACAAATCAATTGCAGACTTTGTCAGTGGGGCTGAAT  1685

Query  782  CAAGGACATACAACCTTCCTTTCAAGTGGGCAGGAACTAACCATGTTGTCTACAATGGCTCACTCTATTTTAAC  855
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1686  CAAGGACATACAACCTTCCTTTCAAGTGGGCAGGAACTAACCATGTTGTCTACAATGGCTCACTCTATTTTAAC  1759

Query  856  AAGTATCAGAGTAATATCATCATCAAATACAGCTTTGATATGGGGAGAGTGCTTGCCCAACGAAGCCTGGAGTA  929
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1760  AAGTATCAGAGTAATATCATCATCAAATACAGCTTTGATATGGGGAGAGTGCTTGCCCAACGAAGCCTGGAGTA  1833

Query  930  TGCTGGTTTTCATAATGTTTACCCCTACACATGGGGTGGATTCTCTGACATCGACCTAATGGCTGATGAAATCG  1003
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1834  TGCTGGTTTTCATAATGTTTACCCCTACACATGGGGTGGATTCTCTGACATCGACCTAATGGCTGATGAAATCG  1907

Query 1004  GGCTGTGGGCTGTGTATGCAACTAACCAGAATGCAGGCAATATTGTCATCAGCCAACTTAACCAAGATACCTTG  1077
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1908  GGCTGTGGGCTGTGTATGCAACTAACCAGAATGCAGGCAATATTGTCATCAGCCAACTTAACCAAGATACCTTG  1981

Query 1078  GAGGTGATGAAGAGCTGGAGCACTGGCTACCCCAAGAGAAGTGCAGGGGAATCTTTCATGATCTGTGGGACACT  1151
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1982  GAGGTGATGAAGAGCTGGAGCACTGGCTACCCCAAGAGAAGTGCAGGGGAATCTTTCATGATCTGTGGGACACT  2055

Query 1152  GTATGTCACCAACTCCCACTTAACTGGAGCCAAGGTGTATTATTCCTATTCCACCAAAACCTCCACATATGAGT  1225
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2056  GTATGTCACCAACTCCCACTTAACTGGAGCCAAGGTGTATTATTCCTATTCCACCAAAACCTCCACATATGAGT  2129

Query 1226  ACACAGACATTCCCTTCCATAACCAATACTTTCACATATCCATGCTTGACTACAATGCAAGAGATCGAGCTCTC  1299
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2130  ACACAGACATTCCCTTCCATAACCAATACTTTCACATATCCATGCTTGACTACAATGCAAGAGATCGAGCTCTC  2203

Query 1300  TGTGCCTGGAACAATGGCCACCAGGTGCTGTTCAATGTCACCCTTTTCCATATCATCAAGACAGAGGATGACAC  1373
            |.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2204  TATGCCTGGAACAATGGCCACCAGGTGCTGTTCAATGTCACCCTTTTCCATATCATCAAGACAGAGGATGACAC  2277

Query 1374  A-------------------------------------------------------------------------  1374
            |                                                                         
Sbjct 2278  ATAGGCAAATGTGACATGTTTTCATTGATTTAAACAGTGTGATTTGTGATAAACTCTATAAGACCCCTTCCGTT  2351

Query 1375  --------------------------------------------------------------------------  1374
                                                                                      
Sbjct 2352  TTTTTCTTCACTATTATTTTTCATCATTTCTCCAAAGCAAAGCATTTTTATTGTAAAGTTGGTGTTTCAAAAAC  2425

Query 1375  --------------------------------------------------------------------------  1374
                                                                                      
Sbjct 2426  ATAGCTGAGCTTGTCTAACTTACCATGTTGGAAACACATCTTAACTTCTAAATTTACAAGGCCTATCATGTCCT  2499

Query 1375  --------------------------------------------------------------------------  1374
                                                                                      
Sbjct 2500  TGTCATGAAAAGCACTAAAAAAAAAAAGAGTTTAAGTGGCTAAAGTCATAGTTTTGCAAGAGATTAATGATCTG  2573

Query 1375  --------------------------------------------------------------------------  1374
                                                                                      
Sbjct 2574  CCTTATATTAGAGTCAGAGACTAATGGTGGCTTAAATGCACGAATGTCTTTTTTTTTAAAACTGTCATTTTTTA  2647

Query 1375  --------------------------------------------------------------------------  1374
                                                                                      
Sbjct 2648  CTGTCTTTTGCTCCATATCAGGAAATATTTTGGTAGGAATTAGGAGAACAAAAAGCACTTTTATCCCATTTATT  2721

Query 1375  --------------------------------------------------------------------------  1374
                                                                                      
Sbjct 2722  TCTTTAAAAAATGTAAGGATTTCATTTATATTGAAAAATAATATTAATCATTTTGCTGTTAACACAATTCTCTG  2795

Query 1375  --------------------------------------------------------------------------  1374
                                                                                      
Sbjct 2796  ATGCGGTGCTGTACAGTCATTTTTAAATCTCTTGCTAACATTTTATTGGCAGTATGTATTTCTACCATTGTAAC  2869

Query 1375  --------------------------------------------------------------------------  1374
                                                                                      
Sbjct 2870  CACCATTGTGCTATTGTATCTCTTCACTTCTGTGAAAGTAATATTTTTTATAAAATACACTGAAATTTAACCTC  2943

Query 1375  --------------------------------------------------------------------------  1374
                                                                                      
Sbjct 2944  AGTAATTGAGTCCATTTTCAAGTGTGGTCAAGAATAATCTTCTTGGCTTACCCCTTTACATAAGCATTATAAAC  3017

Query 1375  --------------------------------------------------------------------------  1374
                                                                                      
Sbjct 3018  TAAAATGAAAACCAAACCAGACACCTGACATAGAGTCTTTATTTTACCCCAAGTTTTTTGGGCCACTGACATTG  3091

Query 1375  --------------------------------------------------------------------------  1374
                                                                                      
Sbjct 3092  AATGCAACAACTGATTTCATACAACTGAGTTACTCTGTTCACTCCACTGAATGCAACCCATATAGTTTCTTGCA  3165

Query 1375  --------------------------------------------------------------------------  1374
                                                                                      
Sbjct 3166  CAAGGTGCATCTGGATTCCAAATATTGGATTTGAGTTGACTCTACTCATTTATTATACACTAAAGAAATTTTGT  3239

Query 1375  --------------------------------------------------------------------------  1374
                                                                                      
Sbjct 3240  TCTTCATAGTTAAATGTACTAGCATTTAATTTATATTTTACATACAACTTGCAATAATGAAATTCCTTATGTCA  3313

Query 1375  --------------------------------------------------------------------------  1374
                                                                                      
Sbjct 3314  GGACCCTGAAAATAAGCACATTTGAAAACTCTTAGAAAAAAAAAATTCTGTAATGTCCTCTAGATTTAGATTAT  3387

Query 1375  --------------------------------------------------------------------------  1374
                                                                                      
Sbjct 3388  GAGCCCTGAGGAGTTATTGGCAAGATTTGTGCAAAATAAAATATGGGGAGACTTGGGAGTTGTCTTTGTGGTTT  3461

Query 1375  --------------------------------------------------------------------------  1374
                                                                                      
Sbjct 3462  CAAAAGTGTAAATAACCAATTCAGAAAACAAAATGGAAAAACGACCCCTTGTTACCTTGATTCACTGTATGTGG  3535

Query 1375  --------------------------------------------------------------------------  1374
                                                                                      
Sbjct 3536  AAAAATAATGTAACCAAAAGGGAAGAGCTTTAATAATACTTATGTTAATAACTCTATGAAACATATAAGCTAAC  3609

Query 1375  --------------------------------------------------------------------------  1374
                                                                                      
Sbjct 3610  TATATATCAAACATTTCATTGAGTTTGGATGTATTTTCCACATATTAAAAAAATAGTTCCCTAAGGCAGCTTTA  3683

Query 1375  --------------------------------------------------------------------------  1374
                                                                                      
Sbjct 3684  TGGAAACTAATATAGGTTGGTTTTACAATTTAAAAAGTATATTCTATAATAAATAATAAAACAAATTGTTTTAA  3757

Query 1375  --------------------------------------------------------------------------  1374
                                                                                      
Sbjct 3758  ATGTTTAGTTTCACACATACATAGTACCATGATTTTCTTTGAAAGATAAGGATGTAATGATTTAGATAAAGCAT  3831

Query 1375  --------------------------------------------------------------------------  1374
                                                                                      
Sbjct 3832  CATGTAAAGAAATCCTAACATTTAAGTGTAATTCATTTCAAATGTCACAAGTAAAGCATCATCCTCAAATATCT  3905

Query 1375  ----------------------------------------------------------  1374
                                                                      
Sbjct 3906  CACTGTCAAAATTGTAGAATTAAATAACCCAATCTTGAAACTGTCAAAAAAAAAAAAA  3963

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