Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_09689
Subject:
NM_001286052.1
Aligned Length:
1944
Identities:
1845
Gaps:
96

Alignment

Query    1  ATGGAACTCGTAACATTCAGGGATGTGGCCATAGAATTCTCCCCTGAAGAGTGGAAATGTCTGGACCCTGCCCA  74
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct    1  ATGGAACTCGTAACATTCAGGGATGTGGCCATAGAATTCTCCCCTGAAGAGTGGAAATGTCTGGACCCTGCCCA  74

Query   75  GCAGAATTTGTATAGAGATGTGATGTTGGAGAACTACAGGAACCTGGTCTCCCTGGGTTTTGTGATCTCTAACC  148
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||                   
Sbjct   75  GCAGAATTTGTATAGAGATGTGATGTTGGAGAACTACAGGAACCTGGTCTCCCTG-------------------  129

Query  149  CAGACCTGGTCACCTGTCTGGAGCAAATAAAAGAGCCCTGCAATTTGAAGATACATGAGACAGCAGCCAAACCC  222
                                                                                      
Sbjct  130  --------------------------------------------------------------------------  129

Query  223  CCAGCTATATGTTCTCCTTTCAGCCAAGACCTTTCACCAGTGCAGGGGATAGAAGATTCATTCCACAAACTTAT  296
               |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  130  ---GCTATATGTTCTCCTTTCAGCCAAGACCTTTCACCAGTGCAGGGGATAGAAGATTCATTCCACAAACTTAT  200

Query  297  ACTGAAAAGATACGAGAAATGTGGACATGAGAATTTACAATTAAGAAAAGGTTGTAAACGTGTGAATGAGTGTA  370
            |||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||
Sbjct  201  ACTGAAAAGATACGAGAAATGTGGACATGAGAATTTACAATTAAGAAAAGGCTGTAAACGTGTGAATGAGTGTA  274

Query  371  AGGTGCAGAAAGGAGTTAATAATGGAGTTTACCAGTGCTTGTCAACTACCCAGAGCAAAATATTTCAATGTAAT  444
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  275  AGGTGCAGAAAGGAGTTAATAATGGAGTTTACCAGTGCTTGTCAACTACCCAGAGCAAAATATTTCAATGTAAT  348

Query  445  ACATGTGTTAAAGTTTTTAGTAAATTTTCAAATTCAAACAAACATAAGATAAGACATACTGGAGAGAAACCCTT  518
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  349  ACATGTGTTAAAGTTTTTAGTAAATTTTCAAATTCAAACAAACATAAGATAAGACATACTGGAGAGAAACCCTT  422

Query  519  TAAATGTACAGAATGTGGCAGATCGTTTTACATGTCACACCTAACTCAACATACAGGAATTCATGCTGGAGAGA  592
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  423  TAAATGTACAGAATGTGGCAGATCGTTTTACATGTCACACCTAACTCAACATACAGGAATTCATGCTGGAGAGA  496

Query  593  AACCCTACAAATGTGAAAAATGTGGCAAAGCCTTTAATAGGTCCACATCACTTAGTAAACATAAGAGAATTCAT  666
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  497  AACCCTACAAATGTGAAAAATGTGGCAAAGCCTTTAATAGGTCCACATCACTTAGTAAACATAAGAGAATTCAT  570

Query  667  ACTGGAGAGAAACCCTACACATGTGAAGAATGTGGCAAAGCCTTTAGACGGTCCACAGTTCTGAACGAACATAA  740
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  571  ACTGGAGAGAAACCCTACACATGTGAAGAATGTGGCAAAGCCTTTAGACGGTCCACAGTTCTGAACGAACATAA  644

Query  741  GAAAATTCATACTGGAGAGAAACCCTACAAATGTGAAGAATGTGGCAAAGCCTTTACAAGGTCCACAACACTGA  814
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  645  GAAAATTCATACTGGAGAGAAACCCTACAAATGTGAAGAATGTGGCAAAGCCTTTACAAGGTCCACAACACTGA  718

Query  815  ATGAACACAAGAAAATTCATACTGGAGAGAAACCCTACAAATGTAAAGAATGTGGCAAAGCCTTTAGATGGTCC  888
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  719  ATGAACACAAGAAAATTCATACTGGAGAGAAACCCTACAAATGTAAAGAATGTGGCAAAGCCTTTAGATGGTCC  792

Query  889  ACAAGCATGAATGAACATAAGAATATTCATACTGGAGAGAAACCCTACAAATGTAAAGAATGTGGCAAAGCCTT  962
            ||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  793  ACAAGCCTGAATGAACATAAGAATATTCATACTGGAGAGAAACCCTACAAATGTAAAGAATGTGGCAAAGCCTT  866

Query  963  TAGACAGTCCAGGAGCCTGAATGAACATAAAAATATTCATACTGGCGAAAAACCCTACACATGTGAAAAATGTG  1036
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  867  TAGACAGTCCAGGAGCCTGAATGAACATAAAAATATTCATACTGGCGAAAAACCCTACACATGTGAAAAATGTG  940

Query 1037  GCAAAGCTTTTAACCAATCCTCAAGTCTTATTATACACAGGAGCATTCATTCTGAACAAAAACTTTACAAATGT  1110
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  941  GCAAAGCTTTTAACCAATCCTCAAGTCTTATTATACACAGGAGCATTCATTCTGAACAAAAACTTTACAAATGT  1014

Query 1111  GAAGAATGTGGCAAAGCCTTTACTTGGTCCTCATCCCTTAATAAACATAAGAGAATTCATACTGGAGAGAAACC  1184
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1015  GAAGAATGTGGCAAAGCCTTTACTTGGTCCTCATCCCTTAATAAACATAAGAGAATTCATACTGGAGAGAAACC  1088

Query 1185  CTACGCATGTGAAGAATGTGGCAAAGCTTTTTATAGGTCCTCACACCTTGCTAAACATAAGAGAATTCATACTG  1258
            ||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1089  CTACACATGTGAAGAATGTGGCAAAGCTTTTTATAGGTCCTCACACCTTGCTAAACATAAGAGAATTCATACTG  1162

Query 1259  GAGAGAAACCCTACACGTGCGAAGAATGTGGCAAAGCTTTTAACCAATCCTCAACTCTTATATTACACAAGAGA  1332
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1163  GAGAGAAACCCTACACGTGCGAAGAATGTGGCAAAGCTTTTAACCAATCCTCAACTCTTATATTACACAAGAGA  1236

Query 1333  ATCCATTCTGGGCAAAAACCTTACAAATGTGAAGAATGTGGCAAAGCCTTTACACGGTCCACAACACTGAACGA  1406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1237  ATCCATTCTGGGCAAAAACCTTACAAATGTGAAGAATGTGGCAAAGCCTTTACACGGTCCACAACACTGAACGA  1310

Query 1407  ACATAAGAAAATTCATACTGGCGAGAAACCCTACAAATGTGAAGAATGTGGCAAAGCTTTCATATGGTCCGCAA  1480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1311  ACATAAGAAAATTCATACTGGCGAGAAACCCTACAAATGTGAAGAATGTGGCAAAGCTTTCATATGGTCCGCAA  1384

Query 1481  GCCTGAATGAACATAAGAATATTCATACTGGAGAGAAACCCTACAAATGTAAAGAATGTGGCAAAGCTTTTAAC  1554
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1385  GCCTGAATGAACATAAGAATATTCATACTGGAGAGAAACCCTACAAATGTAAAGAATGTGGCAAAGCTTTTAAC  1458

Query 1555  CAATCCTCAGGCCTTATTATACACAGGAGCATTCATTCTGAACAAAAACTTTACAAATGTGAAGAATGTGGCAA  1628
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1459  CAATCCTCAGGCCTTATTATACACAGGAGCATTCATTCTGAACAAAAACTTTACAAATGTGAAGAATGTGGCAA  1532

Query 1629  AGCCTTTACTCGGTCCACAGCCCTGAATGAACATAAGAAAATTCATTCTGGAGAGAAACCCTACAAATGCAAAG  1702
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1533  AGCCTTTACTCGGTCCACAGCCCTGAATGAACATAAGAAAATTCATTCTGGAGAGAAACCCTACAAATGCAAAG  1606

Query 1703  AATGTGGCAAAGCCTATAACTTATCCTCAACCCTTACTAAACATAAGAGAATTCATACTGGAGAGAAACCCTTC  1776
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1607  AATGTGGCAAAGCCTATAACTTATCCTCAACCCTTACTAAACATAAGAGAATTCATACTGGAGAGAAACCCTTC  1680

Query 1777  ACATGTGAAGAATGTGGCAAAGCCTTCAATTGGTCCTCATCCCTTACTAAACATAAGATAATTCATACTGGAGA  1850
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1681  ACATGTGAAGAATGTGGCAAAGCCTTCAATTGGTCCTCATCCCTTACTAAACATAAGATAATTCATACTGGAGA  1754

Query 1851  GAAATCCTACAAATGTGAAGAATGTGGCAAAGCTTTTAATCGGCCCTCAACCCTTACTGTACACAAGCGAATTC  1924
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1755  GAAATCCTACAAATGTGAAGAATGTGGCAAAGCTTTTAATCGGCCCTCAACCCTTACTGTACACAAGCGAATTC  1828

Query 1925  ATACTGGCAAGGAACATAGT  1944
            ||||||||||||||||||||
Sbjct 1829  ATACTGGCAAGGAACATAGT  1848

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