Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_09689
Subject:
NM_001348277.2
Aligned Length:
1966
Identities:
1032
Gaps:
794

Alignment

Query    1  ATGGAACTCGTAACATTCAGGGATGTGGCCATAGAATTCTCCCCTGAAGAGTGGAAATGTCTGGACCCTGCCCA  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  GCAGAATTTGTATAGAGATGTGATGTTGGAGAACTACAGGAACCTGGTCTCCCTGGGTTTTGTGATCTCTAACC  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  CAGACCTGGTCACCTGTCTGGAGCAAATAAAAGAGCCCTGCAATTTGAAGATACATGAGACAGCAGCCAAACCC  222
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  223  CCAGCTATATGTTCTCCTTTCAGCCAAGACCTTTCACCAGTGCAGGGGATAGAAGATTCATTCCACAAACTTAT  296
                  ||.|||||||.|||||.||||||||.||..|||||||||||.||||||||||||||||||||||||||
Sbjct    1  ------ATGTGTTCTCATTTCACCCAAGACCATTGGCCAGTGCAGGGCATAGAAGATTCATTCCACAAACTTAT  68

Query  297  ACTGAAAAGATACGAGAAATGTGGACATGAGAATTTACAATTAAGAAAAGGTTGTAAACGTGTGAATGAGTGTA  370
            |||||.||||||.|||||||||||||||||.||||||||||||||||||||.||||||.||.||||||||||||
Sbjct   69  ACTGAGAAGATATGAGAAATGTGGACATGATAATTTACAATTAAGAAAAGGCTGTAAAAGTTTGAATGAGTGTA  142

Query  371  AGGTGCAGAAAGGAGTTAATAATGGAGTTTACCAGTGCTTGTCAACTACCCAGAGCAAAATATTTCAATGTAAT  444
            ||.||||||||||||.|.||||||.|.||.|..|.|||||||||||||||||||||||||||.||||.|||||.
Sbjct  143  AGTTGCAGAAAGGAGGTTATAATGAATTTAATGAATGCTTGTCAACTACCCAGAGCAAAATACTTCAGTGTAAA  216

Query  445  ACATGTGTTAAAGTTTTTAGTAAATTTTCAAATTCAAACAAACATAAGATAAGACATACTGGAGAGAAACCCTT  518
            .||.||||.||||||.|||||||||||||||||||||||||||.|||||.||||||||||||||||||||.|||
Sbjct  217  GCAAGTGTCAAAGTTGTTAGTAAATTTTCAAATTCAAACAAACGTAAGACAAGACATACTGGAGAGAAACACTT  290

Query  519  TAAATGTACAGAATGTGGCAGATCGTTTTACA---TGTCACACCTAACTCAACATACAGG-AATTCATGCTGGA  588
            |||      |||||||||||.|||.|||.|.|   |.||||||||||||||||||| ||| |||||||||||||
Sbjct  291  TAA------AGAATGTGGCAAATCATTTCAGAAGTTTTCACACCTAACTCAACATA-AGGTAATTCATGCTGGA  357

Query  589  GAGAAACCCTACAAATGTGAAAAATGTGGCAAAGCCTTTAATAGGTCCACATCACTTAGTAAACATAAGAGAAT  662
            |||||||||||||..||||||.|||||||||||||||||||..||||...|..|.|||.|.|||||||||||||
Sbjct  358  GAGAAACCCTACACTTGTGAAGAATGTGGCAAAGCCTTTAAATGGTCTTTAATATTTAATGAACATAAGAGAAT  431

Query  663  TCATACTGGAGAGAAACCCTACACATGTGAAGAATGTGGCAAAGC--CTTTAGACGGTCCACAGTTCTGA-AC-  732
            ||||||||||||||||||.|..||.|||||||||||||||  |||  |||||      ||||| |.||.| || 
Sbjct  432  TCATACTGGAGAGAAACCTTTTACTTGTGAAGAATGTGGC--AGCATCTTTA------CCACA-TCCTCACACT  496

Query  733  -----GAACATAAGAAAATTCATACTGGAGAGAAACCCTACAAATGTGAAGAATGTGGCAAAGCCTTTACAAGG  801
                 .|.|||||.|.|||||||||||||||.||||||||.||||||||||||||||||||||||||||..|||
Sbjct  497  TTGCTAAGCATAAAATAATTCATACTGGAGAAAAACCCTATAAATGTGAAGAATGTGGCAAAGCCTTTAATAGG  570

Query  802  TCCACAACACTGAATGAACACAAGAAAATTCATACTGGAGAGAAACCCTACAAATGTAAAGAATGTGGCAAAGC  875
            |.||||||.||.|.|.||||.||||.|||||||.||||||||||||||     ||                   
Sbjct  571  TTCACAACCCTTACTAAACATAAGAGAATTCATGCTGGAGAGAAACCC-----AT-------------------  620

Query  876  CTTTAGATGGTCCACAAGCATGAATGAACATAAGAATATTCATACTGGAGAGAAACCCTACAAATGTAAAGAAT  949
                                                                                      
Sbjct  621  --------------------------------------------------------------------------  620

Query  950  GTGGCAAAGCCTTTAGACAGTCCAGGAGCCTGAATGAACATAAAAATATTCATACTGGCGAAAAACCCTACACA  1023
                                                                                  ||||
Sbjct  621  ----------------------------------------------------------------------CACA  624

Query 1024  TGTGAAAAATGT-GGCAAAGCTTTTAACC-AATCCTCAAGTCTTATTATACACAGGAGCATTCATTCTGAACAA  1095
            ||||||.||||| ||.|||.||||  ||| .||||||                                     
Sbjct  625  TGTGAAGAATGTAGGAAAATCTTT--ACCTCATCCTC-------------------------------------  659

Query 1096  AAACTTTACAAATGTGAAGAATGTGGCAAAGCCTTTACTTGGTCCTCATCCCTTAATAAACATAAGAGAATTCA  1169
            |||||||                       |||                        |||||||||.|||||||
Sbjct  660  AAACTTT-----------------------GCC------------------------AAACATAAGCGAATTCA  686

Query 1170  TACTGGAGAGAAACCCTACGCATGTGAAGAATGTGGCAAAGCTTTTTATAGGTCCTCACACCTTGCTAAACATA  1243
            |||||||||||||||||||..|||||||||||||||||||||.|||.||||||||.||..||||.|||||||||
Sbjct  687  TACTGGAGAGAAACCCTACAAATGTGAAGAATGTGGCAAAGCCTTTAATAGGTCCACAACCCTTACTAAACATA  760

Query 1244  AGAGAATTCATACTGGAGAGAAACCCTACACGTGCGAAGAATGTGGCAAAGCTTTTAACCAATCCTCAACTCTT  1317
            |||||||||||||||||||||||||||||||                                           
Sbjct  761  AGAGAATTCATACTGGAGAGAAACCCTACAC-------------------------------------------  791

Query 1318  ATATTACACAAGAGAATCCATTCTGGGCAAAAACCTTACAAATGTGAAGAATGTGGCAAAGCCTTTACACGGTC  1391
                                                     |||||||||||||||||||||.||||.||.|||
Sbjct  792  -----------------------------------------ATGTGAAGAATGTGGCAAAGCTTTTAGACAGTC  824

Query 1392  CACAACACTGAACGAACATAAGAAAATTCATACTGGCGAGAAACCCTACAAATGTGAAGAATGTGGCAAAGCTT  1465
            |.|||.||||||.||||||||||||.||||||||||.|||...||||||||||||||.||||||||||||||.|
Sbjct  825  CTCAAAACTGAATGAACATAAGAAAGTTCATACTGGAGAGCGGCCCTACAAATGTGATGAATGTGGCAAAGCCT  898

Query 1466  TCATATGGTCCGCAAG---CCTGAATGAACATAAGAATATTCATACTGGAGAGAAACCCTACAAATGTAAAGAA  1536
            |...|.|||||   ||   |||||||||||||||.||.|||||||||||||||||||||               
Sbjct  899  TTGGACGGTCC---AGGGTCCTGAATGAACATAAAAAAATTCATACTGGAGAGAAACCC---------------  954

Query 1537  TGTGGCAAAGCTTTTAACCAATCCTCAGGCCTTATTATACACAGGAGCATTCATTCTGAACAAAAACTTTACAA  1610
                                                                                 |||||
Sbjct  955  ---------------------------------------------------------------------TACAA  959

Query 1611  ATGTGAAGAATGTGGCAAAGCCTTTACTCGGTCCACAGCCCTGAATGAACATAAGAAAATTCATTCTGGAGAGA  1684
            ||||||||||||||||||||||||||..||||||||||..|.||.|.|||||||||||||||||..||.|||.|
Sbjct  960  ATGTGAAGAATGTGGCAAAGCCTTTAGACGGTCCACAGATCGGAGTCAACATAAGAAAATTCATAGTGCAGATA  1033

Query 1685  AACCCTACAAATGCAAAGAATGTGGCAAAGCCTATA---ACTTATC-CTCAACCCTTACTAAACATAAGAGAAT  1754
            |||||||||||||.||||||||||.||||||||.||   |.||.|| ||    |||.|.|.|||||||||.|||
Sbjct 1034  AACCCTACAAATGTAAAGAATGTGACAAAGCCTTTAAACAATTTTCGCT----CCTGAGTCAACATAAGAAAAT  1103

Query 1755  TCATACTGGAGAGAAACCCTTCACATGTGAAGAATGTGGCAAAGCCTTCAATTGGTCCTCATCCCTTACTAAAC  1828
            ||||||||.|||.|||||||.||.||||.||||.||||.|||||||||.||..|||.||||..|||.|.|||||
Sbjct 1104  TCATACTGTAGATAAACCCTACAAATGTAAAGATTGTGACAAAGCCTTTAAACGGTTCTCACACCTGAATAAAC  1177

Query 1829  ATAAGATAATTCATACTGGAGAGAAATCCTACAAATGTGAAGAATGTGGCAAAGCTTTTAATCGGCCCTCAACC  1902
            ||||||.||||||||||                                                         
Sbjct 1178  ATAAGAAAATTCATACT---------------------------------------------------------  1194

Query 1903  CTTACTGTACACAAGCGAATTCATACTGGCAAGGAACATAGT  1944
                                                      
Sbjct 1195  ------------------------------------------  1194

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