Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_09689
Subject:
XM_011513562.3
Aligned Length:
2146
Identities:
1159
Gaps:
842

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGCCCCATAAAGATGGCATTAATGCAGATGCACATGTTGTTTTTCAGATACAGACTTACTCAGACATTGCCAC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CGTCTCCAACTTCTGTAACCTTATAGGGTCTGCAGAGAATGCCATGTTTGAAGATGATGATTGGTGGTCTTGGG  148

Query    1  ---------------------AT-----------GGAACTCGTAACATTCAGGGATGTGGCCATAGAATTCTCC  42
                                 ||           |||||||.|||||||||||||||||||||||||||||||.
Sbjct  149  ATGAAAAGTATTTGTGTTGTGATAACGGTGTTGGGGAACTCTTAACATTCAGGGATGTGGCCATAGAATTCTCT  222

Query   43  CCTGAAGAGTGGAAATGTCTGGACCCTGCCCAGCAGAATTTGTATAGAGATGTGATGTTGGAGAACTACAGGAA  116
            ||.||||||||||||||.||||||||||.|||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  CCAGAAGAGTGGAAATGCCTGGACCCTGACCAGCAGAATTTGTATAGAGATGTGATGTTGGAGAACTACAGGAA  296

Query  117  CCTGGTCTCCCTGGGTTTTGTGATCTCTAACCCAGACCTGGTCACCTGTCTGGAGCAAATAAAAGAGCCCTGCA  190
            |||||||||||||                                                             
Sbjct  297  CCTGGTCTCCCTG-------------------------------------------------------------  309

Query  191  ATTTGAAGATACATGAGACAGCAGCCAAACCCCCAGCTATATGTTCTCCTTTCAGCCAAGACCTTTCACCAGTG  264
                                               |||||.|||||||.|||||.||||||||.||..||||||
Sbjct  310  -----------------------------------GCTATGTGTTCTCATTTCACCCAAGACCATTGGCCAGTG  348

Query  265  CAGGGGATAGAAGATTCATTCCACAAACTTATACTGAAAAGATACGAGAAATGTGGACATGAGAATTTACAATT  338
            |||||.|||||||||||||||||||||||||||||||.||||||.|||||||||||||||||.|||||||||||
Sbjct  349  CAGGGCATAGAAGATTCATTCCACAAACTTATACTGAGAAGATATGAGAAATGTGGACATGATAATTTACAATT  422

Query  339  AAGAAAAGGTTGTAAACGTGTGAATGAGTGTAAGGTGCAGAAAGGAGTTAATAATGGAGTTTACCAGTGCTTGT  412
            |||||||||.||||||.||.||||||||||||||.||||||||||||.|.||||||.|.||.|..|.|||||||
Sbjct  423  AAGAAAAGGCTGTAAAAGTTTGAATGAGTGTAAGTTGCAGAAAGGAGGTTATAATGAATTTAATGAATGCTTGT  496

Query  413  CAACTACCCAGAGCAAAATATTTCAATGTAATACATGTGTTAAAGTTTTTAGTAAATTTTCAAATTCAAACAAA  486
            ||||||||||||||||||||.||||.|||||..||.||||.||||||.||||||||||||||||||||||||||
Sbjct  497  CAACTACCCAGAGCAAAATACTTCAGTGTAAAGCAAGTGTCAAAGTTGTTAGTAAATTTTCAAATTCAAACAAA  570

Query  487  CATAAGATAAGACATACTGGAGAGAAACCCTTTAAATGTACAGAATGTGGCAGATCGTTTTACA---TGTCACA  557
            |.|||||.||||||||||||||||||||.||||||      |||||||||||.|||.|||.|.|   |.|||||
Sbjct  571  CGTAAGACAAGACATACTGGAGAGAAACACTTTAA------AGAATGTGGCAAATCATTTCAGAAGTTTTCACA  638

Query  558  CCTAACTCAACATACAGG-AATTCATGCTGGAGAGAAACCCTACAAATGTGAAAAATGTGGCAAAGCCTTTAAT  630
            |||||||||||||| ||| ||||||||||||||||||||||||||..||||||.|||||||||||||||||||.
Sbjct  639  CCTAACTCAACATA-AGGTAATTCATGCTGGAGAGAAACCCTACACTTGTGAAGAATGTGGCAAAGCCTTTAAA  711

Query  631  AGGTCCACATCACTTAGTAAACATAAGAGAATTCATACTGGAGAGAAACCCTACACATGTGAAGAATGTGGCAA  704
            .||||...|..|.|||.|.|||||||||||||||||||||||||||||||.|..||.|||||||||||||||  
Sbjct  712  TGGTCTTTAATATTTAATGAACATAAGAGAATTCATACTGGAGAGAAACCTTTTACTTGTGAAGAATGTGGC--  783

Query  705  AGC--CTTTAGACGGTCCACAGTTCTGA-AC------GAACATAAGAAAATTCATACTGGAGAGAAACCCTACA  769
            |||  |||||      ||||| |.||.| ||      .|.|||||.|.|||||||||||||||.||||||||.|
Sbjct  784  AGCATCTTTA------CCACA-TCCTCACACTTTGCTAAGCATAAAATAATTCATACTGGAGAAAAACCCTATA  850

Query  770  AATGTGAAGAATGTGGCAAAGCCTTTACAAGGTCCACAACACTGAATGAACACAAGAAAATTCATACTGGAGAG  843
            |||||||||||||||||||||||||||..||||.||||||.||.|.|.||||.||||.|||||||.||||||||
Sbjct  851  AATGTGAAGAATGTGGCAAAGCCTTTAATAGGTTCACAACCCTTACTAAACATAAGAGAATTCATGCTGGAGAG  924

Query  844  AAACCCTACAAATGTAAAGAATGTGGCAAAGCCTTTAGATGGTCCACAAGCATGAATGAACATAAGAATATTCA  917
            ||||||     ||                                                             
Sbjct  925  AAACCC-----AT-------------------------------------------------------------  932

Query  918  TACTGGAGAGAAACCCTACAAATGTAAAGAATGTGGCAAAGCCTTTAGACAGTCCAGGAGCCTGAATGAACATA  991
                                                                                      
Sbjct  933  --------------------------------------------------------------------------  932

Query  992  AAAATATTCATACTGGCGAAAAACCCTACACATGTGAAAAATGT-GGCAAAGCTTTTAACC-AATCCTCAAGTC  1063
                                        ||||||||||.||||| ||.|||.||||  ||| .||||||     
Sbjct  933  ----------------------------CACATGTGAAGAATGTAGGAAAATCTTT--ACCTCATCCTC-----  971

Query 1064  TTATTATACACAGGAGCATTCATTCTGAACAAAAACTTTACAAATGTGAAGAATGTGGCAAAGCCTTTACTTGG  1137
                                            |||||||                       |||         
Sbjct  972  --------------------------------AAACTTT-----------------------GCC---------  981

Query 1138  TCCTCATCCCTTAATAAACATAAGAGAATTCATACTGGAGAGAAACCCTACGCATGTGAAGAATGTGGCAAAGC  1211
                           |||||||||.||||||||||||||||||||||||||..|||||||||||||||||||||
Sbjct  982  ---------------AAACATAAGCGAATTCATACTGGAGAGAAACCCTACAAATGTGAAGAATGTGGCAAAGC  1040

Query 1212  TTTTTATAGGTCCTCACACCTTGCTAAACATAAGAGAATTCATACTGGAGAGAAACCCTACACGTGCGAAGAAT  1285
            .|||.||||||||.||..||||.||||||||||||||||||||||||||||||||||||||||           
Sbjct 1041  CTTTAATAGGTCCACAACCCTTACTAAACATAAGAGAATTCATACTGGAGAGAAACCCTACAC-----------  1103

Query 1286  GTGGCAAAGCTTTTAACCAATCCTCAACTCTTATATTACACAAGAGAATCCATTCTGGGCAAAAACCTTACAAA  1359
                                                                                     |
Sbjct 1104  -------------------------------------------------------------------------A  1104

Query 1360  TGTGAAGAATGTGGCAAAGCCTTTACACGGTCCACAACACTGAACGAACATAAGAAAATTCATACTGGCGAGAA  1433
            ||||||||||||||||||||.||||.||.||||.|||.||||||.||||||||||||.||||||||||.|||..
Sbjct 1105  TGTGAAGAATGTGGCAAAGCTTTTAGACAGTCCTCAAAACTGAATGAACATAAGAAAGTTCATACTGGAGAGCG  1178

Query 1434  ACCCTACAAATGTGAAGAATGTGGCAAAGCTTTCATATGGTCCGCAAG---CCTGAATGAACATAAGAATATTC  1504
            .||||||||||||||.||||||||||||||.||...|.|||||   ||   |||||||||||||||.||.||||
Sbjct 1179  GCCCTACAAATGTGATGAATGTGGCAAAGCCTTTGGACGGTCC---AGGGTCCTGAATGAACATAAAAAAATTC  1249

Query 1505  ATACTGGAGAGAAACCCTACAAATGTAAAGAATGTGGCAAAGCTTTTAACCAATCCTCAGGCCTTATTATACAC  1578
            |||||||||||||||||                                                         
Sbjct 1250  ATACTGGAGAGAAACCC---------------------------------------------------------  1266

Query 1579  AGGAGCATTCATTCTGAACAAAAACTTTACAAATGTGAAGAATGTGGCAAAGCCTTTACTCGGTCCACAGCCCT  1652
                                       |||||||||||||||||||||||||||||||..||||||||||..|.
Sbjct 1267  ---------------------------TACAAATGTGAAGAATGTGGCAAAGCCTTTAGACGGTCCACAGATCG  1313

Query 1653  GAATGAACATAAGAAAATTCATTCTGGAGAGAAACCCTACAAATGCAAAGAATGTGGCAAAGCCTATA---ACT  1723
            ||.|.|||||||||||||||||..||.|||.||||||||||||||.||||||||||.||||||||.||   |.|
Sbjct 1314  GAGTCAACATAAGAAAATTCATAGTGCAGATAAACCCTACAAATGTAAAGAATGTGACAAAGCCTTTAAACAAT  1387

Query 1724  TATC-CTCAACCCTTACTAAACATAAGAGAATTCATACTGGAGAGAAACCCTTCACATGTGAAGAATGTGGCAA  1796
            |.|| ||    |||.|.|.|||||||||.|||||||||||.|||.|||||||.||.||||.||||.||||.|||
Sbjct 1388  TTTCGCT----CCTGAGTCAACATAAGAAAATTCATACTGTAGATAAACCCTACAAATGTAAAGATTGTGACAA  1457

Query 1797  AGCCTTCAATTGGTCCTCATCCCTTACTAAACATAAGATAATTCATACTGGAGAGAAATCCTACAAATGTGAAG  1870
            ||||||.||..|||.||||..|||.|.|||||||||||.||||||||||                         
Sbjct 1458  AGCCTTTAAACGGTTCTCACACCTGAATAAACATAAGAAAATTCATACT-------------------------  1506

Query 1871  AATGTGGCAAAGCTTTTAATCGGCCCTCAACCCTTACTGTACACAAGCGAATTCATACTGGCAAGGAACATAGT  1944
                                                                                      
Sbjct 1507  --------------------------------------------------------------------------  1506

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