Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_10461
Subject:
NM_018902.4
Aligned Length:
2944
Identities:
2403
Gaps:
191

Alignment

Query    1  ATGGT--GTTTACCCCGGAGGATAGATTGGGAAAGCAATGTCTGCTCCTCCCGCTTCTGCTCCTCGCAGCCTGG  72
            |||.|  ||||.|...|.|||  .|||||||.|..|.|.|.||.|..|||..||||||.|||||||.|..||||
Sbjct    1  ATGTTTGGTTTTCAGAGAAGG--GGATTGGGCACCCCACGACTACAGCTCTGGCTTCTCCTCCTCGAATTCTGG  72

Query   73  AAGGTGGGGAGCGGCCAGCTCCACTACTCCGTACCCGAGGAGGCCAAACACGGCACCTTCGTGGGCCGGATCGC  146
            .|||||||||||||||||||||||||||||||..|.||||||||||||||||||||||||||||||||.|||||
Sbjct   73  GAGGTGGGGAGCGGCCAGCTCCACTACTCCGTCTCGGAGGAGGCCAAACACGGCACCTTCGTGGGCCGCATCGC  146

Query  147  GCAGGACCTGGGGCTGGAGCTGGCGGAGCTGGTGCCGCGCCTGTTCAGGATGGCCTCCAAAGAC-CGCGAGGAC  219
            |||||||||||||||||||||||||||||||||||.||||||||||.||.||||.|||||| || |..|.||||
Sbjct  147  GCAGGACCTGGGGCTGGAGCTGGCGGAGCTGGTGCAGCGCCTGTTCCGGGTGGCGTCCAAA-ACACATGGGGAC  219

Query  220  CTTCTGGAGGTAAATCTGCAGAATGGCATTTTGTTTGTGAATTCTCGGATCGACCGCGAGGAGCTGTGCGGGCG  293
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.
Sbjct  220  CTTCTGGAGGTAAATCTGCAGAATGGCATTTTGTTTGTGAATTCTCGGATCGACCGCGAGGAGCTGTGCGGGCA  293

Query  294  GAGCGCGGAGTGCAGCATCCACCTGGAGGTGATCGTGGACAGGCCGCTGCAGGTTTTCCATGTGGACGTGGAGG  367
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||
Sbjct  294  GAGCGCGGAGTGCAGCATCCACCTGGAGGTGATCGTGGACAGGCCGCTGCAGGTTTTCCATGTGAACGTGGAGG  367

Query  368  TGAGGGACATTAACGACAACCCGCCCTTGTTCCCGGT-AGAGGAACAAAGAG-TGCTGATTTACGAATCTAGGC  439
            |||.|||||||||||||||||||||..|||||.||.| ||| ||||||| || ||||||||...|||||||.||
Sbjct  368  TGAAGGACATTAACGACAACCCGCCGGTGTTCTCGCTCAGA-GAACAAA-AGCTGCTGATTGCGGAATCTAAGC  439

Query  440  TGCCAGATTCTGTG-TTTCCACTGGAGGGCGCGTCCGATGCAGATGTTG--------GCTCAAATTCCATCTTA  504
            ...|.||.|| |.| ||||||||.|||||.||.||.|||||.||..|||        ||||        |.||.
Sbjct  440  AATCGGACTC-GCGTTTTCCACTAGAGGGAGCTTCTGATGCTGACATTGAAGAGAATGCTC--------TATTG  504

Query  505  ACCTATAAACTCAGTTCTAGCGAATA-----CTTCGGGCTAGATGTGAAAATAAACAGTGATGACAA----TAA  569
            |||||.|..||.|||...|..||.||     |||     |||||       |.|.||      ||||    |||
Sbjct  505  ACCTACAGGCTAAGTAAAAATGAGTATTTTTCTT-----TAGAT-------TCACCA------ACAAATGGTAA  560

Query  570  ACAAATT-------GGGCTCTTA--TTAAAGAAATCCTTGGACAGAGAGGAAGCTCCTGCACACAACTTA--TT  632
            .||.|||       .|.|.||||  ||||||||.||..||||.||||||.||.||||.|     ||||||  ||
Sbjct  561  GCAGATTAAAAGACTGTCACTTATTTTAAAGAAGTCTCTGGATAGAGAGAAAACTCCGG-----AACTTAATTT  629

Query  633  CCTG---ACAGCCACAGATGGGGGCAAACCTGAGCTCACAGGCACTGTTCAGCTGCTGGTCACAGTGCTGGATG  703
            .|||   |||||.|||||.|||||.|||||.|||||.||.|||||.||||.||||.|.|||..|||..||||||
Sbjct  630  GCTGCTAACAGCTACAGACGGGGGAAAACCAGAGCTTACTGGCACCGTTCGGCTGTTAGTCCAAGTCTTGGATG  703

Query  704  TGAATGATAATGCTCC-CACTTTCGAACAGTCTGAATACGAAGTAAGAATATTCGAAAATGCAGACAACGGAAC  776
            |.||.||.||||.||| .|.||| ||..|.||.|||||..|.||.||..|..|.||||||||.|..||.|.|||
Sbjct  704  TCAACGACAATGATCCAGAGTTT-GATAAATCAGAATATAAGGTGAGCCTTATGGAAAATGCTGCTAAAGAAAC  776

Query  777  AACAGTTATCAGACTGAATGCTTCTGATCGGGATGAAGGAGCGAATGG---GGCAATTTCATATTCTTTTAAT-  846
            ....||..|||.|||.||.||..|.||.||.||.|||||||..|||||   ||.||   ||||.|| .||||| 
Sbjct  777  TCTTGTGCTCAAACTAAACGCCACAGACCGAGACGAAGGAGTCAATGGAGAGGTAA---CATACTC-CTTAATG  846

Query  847  -------AGCCTTGTTGCAGCCATGG-------TTATTGACCACTTTAGCATAGATCGAAATACGGGAGAAATA  906
                   ||||         |.||||       |||||.| |||       ||||||.|||||..|||||   |
Sbjct  847  TCAATTAAGCC---------CAATGGAAGACACTTATTTA-CAC-------TAGATCAAAATAATGGAGA---A  900

Query  907  GTGATTCGGGGT-------AATTTGGATTTTGAACAAGAAAACTTATACAAAATCCTCATTG------ACGCCA  967
            ||||    ||||       |.|||.||||.||||.||.|.||.||.||.|||      ||||      |.||.|
Sbjct  901  GTGA----GGGTCAATGGAACTTTAGATTATGAAGAAAACAAGTTTTATAAA------ATTGAAGTACAGGCTA  964

Query  968  CGGACAAAGGCCATCCTCCCATGGCGGGTCATTGCACCGTTTTAGTGAGAATTTTGGATAAAAATGATAACGTC  1041
            |.||.||.||...|||.||.|||||.|||||.||.||.||.|..|||..|||.|||||.|..||.|||||| ||
Sbjct  965  CAGATAAGGGGACTCCCCCAATGGCAGGTCACTGTACAGTCTGGGTGGAAATCTTGGACACCAACGATAAC-TC  1037

Query 1042  -CCTGAGATAGCACTGACTTCCTTATCCTTGCCTGTACGTGAAGACGCTCAATTTG----GTACTGTCATCGCC  1110
             |||||..|.||..||||||||||.|||.|.||.|||||.||.||||||||    |    |.||.|||||.|||
Sbjct 1038  TCCTGAAGTCGCCGTGACTTCCTTGTCCCTCCCAGTACGAGAGGACGCTCA----GCCCAGCACGGTCATTGCC  1107

Query 1111  CTAATTAGCGTGAACGACCTCGATTCAGGTGCCAACGGGCAGGTGAACTGCTCGCTGACGCCTCACGTCCCTTT  1184
            ||.||.||||||...||||..||.|||||||.||||||.|||||||.|||||||||||||||.|||||.||.||
Sbjct 1108  CTGATCAGCGTGTCTGACCGTGACTCAGGTGTCAACGGACAGGTGACCTGCTCGCTGACGCCCCACGTTCCCTT  1181

Query 1185  CAAGCTGGTGTCCACCTTCAAGAATTACTACTCGTTGGTGCTGGACAGTGCCCTGGACCGCGAGAGCGTGTCGG  1258
            ||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||.|||||.||
Sbjct 1182  CAAGCTGGTGTCCACCTTCAAGAATTACTACTCGTTGGTGCTGGACAGCGCCCTGGACCGCGAGAACGTGTGGG  1255

Query 1259  CCTATGAGTTGGTGGTGACCGCGCGGGACGGGGGCTCGCCTTCGCTGTGGGCCACAGCCAGCTTGTCTGTGGAG  1332
            |||||||..||||||||||.||||||||.|||||.||||||||.|||||||||||.|||||..|.||.||||||
Sbjct 1256  CCTATGAACTGGTGGTGACTGCGCGGGATGGGGGTTCGCCTTCTCTGTGGGCCACGGCCAGGGTATCCGTGGAG  1329

Query 1333  GTGGCCGACATGAATGACAATGCTCCGGCGTTCGCGCAGCCCGAGTACACAGTGTTCGTGAAGGAGAACAACCC  1406
            |||||||||.||||.||||||||.||.||||||||.||||||||||||||.|||||||||||||||||||||||
Sbjct 1330  GTGGCCGACGTGAACGACAATGCGCCTGCGTTCGCACAGCCCGAGTACACCGTGTTCGTGAAGGAGAACAACCC  1403

Query 1407  GCCGGGCTGCCACATCTTCACGGTGTCTGCGCGAGACGCGGACGCGCAGGAGAACGCGCTGGTGTCCTACTCGC  1480
            .||.|||||||||||||||||.|||||.|||||.||||||||||||||||||||||||||||||||||||||||
Sbjct 1404  ACCAGGCTGCCACATCTTCACAGTGTCGGCGCGGGACGCGGACGCGCAGGAGAACGCGCTGGTGTCCTACTCGC  1477

Query 1481  TGGTGGAGCGGCGGGTGGGCGAGCGCGCGTTGTCGAGCTACATTTCGGTGCACGCGGAGAGCGGCAAGGTGTAC  1554
            ||||||||||||||.|||||||.||||||.|||||||||||.|.||||||||||||||||||||||||||||||
Sbjct 1478  TGGTGGAGCGGCGGTTGGGCGACCGCGCGCTGTCGAGCTACGTGTCGGTGCACGCGGAGAGCGGCAAGGTGTAC  1551

Query 1555  GCGCTGCAGCCGCTGGACCACGAGGAGCTAGAGCTGCTGCAGTTTCAGGTGAGCGCGCGCGACGCGGGCGTGCC  1628
            ||||||||||||.||||||||||||||||.||||||||.|||||.|||||||||||||||||.|||||||||||
Sbjct 1552  GCGCTGCAGCCGTTGGACCACGAGGAGCTGGAGCTGCTACAGTTCCAGGTGAGCGCGCGCGATGCGGGCGTGCC  1625

Query 1629  GCCTCTGGGCAGCAACGTGACGCTGCAGGTGTTCGTGCTGGACGAGAACGACAACGCGCCGGCGCTGCTGGCGC  1702
            |||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||.
Sbjct 1626  GCCTCTGAGCAGCAACGTGACGCTGCAGGTGTTCGTGCTGGACGAGAACGACAACGCGCCGGCACTGCTGGCGA  1699

Query 1703  CTCGGGTGGGTGGTACTGGTGGTGCAGTGAGCGAGCTGGTGCCGCGGTCACTGGGTGCAGGCCAAGTGGTGGCG  1776
            |||.||..||..|..|.||.||.|||||.|.|.||||.||.||||||||..|||||||.|||||.|||||||||
Sbjct 1700  CTCAGGCTGGCAGCGCGGGAGGCGCAGTTAACAAGCTAGTACCGCGGTCGGTGGGTGCGGGCCACGTGGTGGCG  1773

Query 1777  AAGGTGCGCGCAGTTGACGCCGACTCAGGCTACAACGCGTGGCTTTCGTATGAGCTGCAGCCCCCGGCAAGCAG  1850
            ||||||||||||||.||.||.||||||||||||||||||||||||||.|||||..|||||||..||||..||.|
Sbjct 1774  AAGGTGCGCGCAGTGGATGCGGACTCAGGCTACAACGCGTGGCTTTCATATGAATTGCAGCCGGCGGCGGGCGG  1847

Query 1851  CGCTCGCTTCCCGTTTCGCGTGGGGCTGTACACGGGCGAGATCAGCACCACTCGTGTCCTGGACGAAGCGGACT  1924
            |.|.|||.|||||||.||||||||||||||||||||||||||.|||||.||.||||.|||||||||.||.||||
Sbjct 1848  CTCGCGCATCCCGTTCCGCGTGGGGCTGTACACGGGCGAGATAAGCACAACGCGTGCCCTGGACGAGGCAGACT  1921

Query 1925  CTCCGCGCCACCGGCTGCTGGTGCTGGTGAAAGACCACGGTGAGCCGGCGCTGACAGCGACGGCCACGGTTCTG  1998
            |.|||||||||||.||.||.||.||||||||.||.||||||||||||||||||||.||.||||||||.||.|||
Sbjct 1922  CGCCGCGCCACCGACTTCTAGTACTGGTGAAGGATCACGGTGAGCCGGCGCTGACGGCCACGGCCACCGTGCTG  1995

Query 1999  GTGTCGCTGGTGGAGAGTGGCCAGGCTCCAAAGGCGTCATCACGGGCGTCGGTGGGCGCCGCGGGCCCAGAGGC  2072
            ||||||.||||||||||.||.|||||.||||||||.||.||.|||.|.|.||.||||||||||.||||||||||
Sbjct 1996  GTGTCGTTGGTGGAGAGCGGACAGGCGCCAAAGGCCTCTTCCCGGACTTTGGCGGGCGCCGCGAGCCCAGAGGC  2069

Query 2073  GGCGCTGGTGGATGTCAACGTGTACCTGATCATCGCCATCTGCGCGGTATCCAGCCTGCTGGTCCTCACGCTAC  2146
            .|||||||||||||||||||||||||||||||||||||||||||.|||.||||||||.|||||.||||||||.|
Sbjct 2070  TGCGCTGGTGGATGTCAACGTGTACCTGATCATCGCCATCTGCGTGGTGTCCAGCCTCCTGGTACTCACGCTGC  2143

Query 2147  TGCTGTACACAGCGCTGCGGTGCTCGGCGCCACCCACCGAGGGCGCGTGCACGGCGGACAAGCCCACGCTGGTG  2220
            |||||||.||.||||||.||||.|||||..|.|||||.||||||||||||.||.|||..|||||||||||||||
Sbjct 2144  TGCTGTATACGGCGCTGTGGTGGTCGGCAACGCCCACTGAGGGCGCGTGCGCGCCGGGGAAGCCCACGCTGGTG  2217

Query 2221  TGCTCCAGCGCAGTGGGGAGCTGGTCGTACTCGCAGCAGAGGCGGCAGAGGGTGTGCTCCGGGGAGGGCCCACC  2294
            ||||||.||||.||||||||||||||.||||||||||||||||||||||||||||||||.|.||||||||||||
Sbjct 2218  TGCTCCCGCGCGGTGGGGAGCTGGTCATACTCGCAGCAGAGGCGGCAGAGGGTGTGCTCTGAGGAGGGCCCACC  2291

Query 2295  CAAGATGGATCTCATGGCCTTTAGCCCCAGCCTTTCACCTTGTCCTA-TTATGATGGGTAAGGCGGAGAATCAG  2367
            .||||.|||.|||||||||||.||||||||.|||   |||    ||| .|.|||   .|||.|.||||.|...|
Sbjct 2292  TAAGACGGACCTCATGGCCTTCAGCCCCAGTCTT---CCT----CTAGGTCTGA---ATAAAGAGGAGGAAGGG  2355

Query 2368  GATTTAAATGAAGATCATGATGCCA-------------------AACCACGACAGCCCAACCCTGACTGGCGTT  2422
            ||        |||| ||.|| ||||                   |.||||||||||||||||||||||||||||
Sbjct 2356  GA--------AAGA-CAGGA-GCCAGGGTCAAATCACCCCGGACAGCCACGACAGCCCAACCCTGACTGGCGTT  2419

Query 2423  ACTCTGCCTCCCTGAGAGCAGGCATGCACAGCTCTGTGCACCTAGAGGAGGCTGGCATTCTACGGGCTGGTCCA  2496
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2420  ACTCTGCCTCCCTGAGAGCAGGCATGCACAGCTCTGTGCACCTAGAGGAGGCTGGCATTCTACGGGCTGGTCCA  2493

Query 2497  GGAGGGCCTGATCAGCAGTGGCCAACAGTATCCAGTGCAACACCAGAACCAGAGGCAGGAGAAGTGTCCCCTCC  2570
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2494  GGAGGGCCTGATCAGCAGTGGCCAACAGTATCCAGTGCAACACCAGAACCAGAGGCAGGAGAAGTGTCCCCTCC  2567

Query 2571  AGTCGGTGCGGGTGTCAACAGCAACAGCTGGACCTTTAAATACGGACCAGGCAACCCCAAACAATCCGGTCCCG  2644
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2568  AGTCGGTGCGGGTGTCAACAGCAACAGCTGGACCTTTAAATACGGACCAGGCAACCCCAAACAATCCGGTCCCG  2641

Query 2645  GTGAGTTGCCCGACAAATTCATTATCCCAGGATCTCCTGCAATCATCTCCATCCGGCAGGAGCCTACTAACAGC  2718
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2642  GTGAGTTGCCCGACAAATTCATTATCCCAGGATCTCCTGCAATCATCTCCATCCGGCAGGAGCCTACTAACAGC  2715

Query 2719  CAAATTGACAAAAGTGACTTCATAACCTTCGGCAAAAAGGAGGAGACCAAGAAAAAGAAGAAAAAGAAGAAGGG  2792
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2716  CAAATTGACAAAAGTGACTTCATAACCTTCGGCAAAAAGGAGGAGACCAAGAAAAAGAAGAAAAAGAAGAAGGG  2789

Query 2793  TAACAAGACCCAGGAGAAAAAAGAGAAAGGGAACAGCACGACTGACAACAGTGACTAG  2850
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||.||
Sbjct 2790  TAACAAGACCCAGGAGAAAAAAGAGAAAGGGAACAGCACGACTGACAACAGTGACCAG  2847

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