Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_10461
Subject:
NM_018903.4
Aligned Length:
2911
Identities:
2390
Gaps:
149

Alignment

Query    1  ATGGTGTTTACCCCGGAGGATAGA---TTGGGAAAGCAATGTCTGCTCCTCCCGCTTCTGCTCCTCGCAGCCTG  71
            ||||||.|||  .||||..| |||   ..||||...||..|||||||.|||.|||||||||||||.||||||||
Sbjct    1  ATGGTGATTA--TCGGACCA-AGAGGCCCGGGATCCCAGCGTCTGCTGCTCTCGCTTCTGCTCCTTGCAGCCTG  71

Query   72  GAAGGTGGGGAGCGGCCAGCTCCACTACTCCGTACCCGAGGAGGCCAAACACGGCACCTTCGTGGGCCGGATCG  145
            |.|||||||||||||||||||||||||||||||...|||||||||||||||||||||||||||||||||.||||
Sbjct   72  GGAGGTGGGGAGCGGCCAGCTCCACTACTCCGTCTACGAGGAGGCCAAACACGGCACCTTCGTGGGCCGCATCG  145

Query  146  CGCAGGACCTGGGGCTGGAGCTGGCGGAGCTGGTGCCGCGCCTGTTCAGGATGGCCTCC-AAAGACCGCGAGGA  218
            |.|||||||||||||||||||||||||||||||||||||||||||||.||.||||.||| ||||| |.||.|||
Sbjct  146  CTCAGGACCTGGGGCTGGAGCTGGCGGAGCTGGTGCCGCGCCTGTTCCGGGTGGCGTCCAAAAGA-CACGGGGA  218

Query  219  CCTTCTGGAGGTAAATCTGCAGAATGGCATTTTGTTTGTGAATTCTCGGATCGACCGCGAGGAGCTGTGCGGGC  292
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||
Sbjct  219  CCTTCTGGAGGTAAATCTGCAGAATGGCATTTTGTTTGTGAATTCTCGGATCGACCGCGAGAAGCTGTGCGGGC  292

Query  293  GGAGCGCGGAGTGCAGCATCCACCTGGAGGTGATCGTGGACAGGCCGCTGCAGGTTTTCCATGTGGACGTGGAG  366
            ||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  293  GGAGCGCGGAGTGCAGTATCCACCTGGAGGTGATCGTGGACAGGCCGCTGCAGGTTTTCCATGTGGACGTGGAG  366

Query  367  GTGAGGGACATTAACGACAACCCGCCCTTGTTCCCGGTAGA-----GGAACAAAGAGT-GCTGATTTACGAATC  434
            ||||.|||||||||||||||||||||..|||||     |||     ||||||||..|| .||| |||..|||||
Sbjct  367  GTGAAGGACATTAACGACAACCCGCCGGTGTTC-----AGAGAAAGGGAACAAAAGGTACCTG-TTTCTGAATC  434

Query  435  TAGGCTGCCAGATTCTGTGTTTCCACTGGAGGGCGCGTCCGATGCAGATGTTGGCTCAAATTCCATCTTAACCT  508
            |..||..|..||.|||...|||||.||.||||||||.||.|||||.|||.|.|||..|||.||..|.||.||||
Sbjct  435  TGCGCCTCTGGACTCTCATTTTCCTCTAGAGGGCGCTTCTGATGCGGATATCGGCGTAAACTCTCTTTTGACCT  508

Query  509  ATAAACTCAGTTCTA---GCGAATACTTCGGGCTAGATGTGAAAATAAACAGTGATGACAATAAACAAATTG--  577
            ||....|.|| ||||   |.||||  ||.|.|||..|..|.||||.|||.|..|||    |.||..|.||||  
Sbjct  509  ATGCGTTAAG-TCTAAATGAGAAT--TTTGAGCTTAAAATAAAAACAAAAAAAGAT----AAAAGTATATTGCC  575

Query  578  ------GGCTCTTATTAAAGAAATCCTTGGACAGAGAGGAAGCTCCTGCACACAACTTATTCCTGACAGCCACA  645
                  .|.||||    ..|||.|..||||||||||||.||.|.||...||.|||.|||||.||||..|..|..
Sbjct  576  TGAATTAGTTCTT----CGGAAGTTATTGGACAGAGAGCAAACGCCAAAACTCAATTTATTGCTGATGGTAATC  645

Query  646  GATGGGGGCAAACCTGAGCTCACAGGCACTGTTCAGCTGCTGGTCACAGTGCTGGATGTGAATGATAATGCTCC  719
            |||||.||.|||||.||.||.|||||..||||.|||.|.|...|.||.||.||||||||||||||.||||.|||
Sbjct  646  GATGGCGGTAAACCAGAACTAACAGGGTCTGTCCAGATTCAAATAACCGTCCTGGATGTGAATGACAATGGTCC  719

Query  720  CACTTTCGA-----ACAGTCTGAATACGAAGTAAGAATATTC-GAAAATGCAGACAACGGAACAACAGTTATCA  787
            ..|.||.||     .||| ||  |||  |||| ||..|..|| |||||||...|.||||..||||.|||.|||.
Sbjct  720  GGCGTTTGATAAGCCCAG-CT--ATA--AAGT-AGTGTTGTCTGAAAATGTCCAAAACGACACAAGAGTGATCC  787

Query  788  GACTGAATGCTTCTGATCGGGATGAAGGAGCGAATGGGGCAATTTCATAT----TC-------TTTTAATAGCC  850
            .|||.||||||||.||||..||.||||||...|||||.|.||||||.|||    ||       ||||       
Sbjct  788  AACTAAATGCTTCCGATCCAGACGAAGGACTTAATGGAGAAATTTCCTATGGGATCAAAATGATTTT-------  854

Query  851  TTGTTGCAGCCATGGTTATTGACCA------CTTTAGCATAGATCGAAATACGGGAGAAA-TAGTGATTCGGGG  917
                    ||||  ||.|.|||..|      .|||...|||.|||.|.|.||.||.|||| ||| .|||...||
Sbjct  855  --------GCCA--GTGAGTGAGAAATGTATGTTTTCAATAAATCCAGACACAGGTGAAATTAG-AATTTATGG  917

Query  918  TAATTTGGATTTTGAACAAGAAAA---CTTATACAAAATCCTCA--TTGACGCCACGGACAAAGGCCATCCTCC  986
            |.|..||||||||||| .||||.|   |.|||  .||||  |||  ||.||||||..||.|||||...||||.|
Sbjct  918  TGAACTGGATTTTGAA-GAGAATAATGCCTAT--GAAAT--TCAGGTTAACGCCATTGATAAAGGGATTCCTTC  986

Query  987  CATGGCGGGTCATTGCACCGTTTTAGTGAGAA-TTTTGGATAAAAATGATAACGTCCCTGAGATAGCACTG---  1056
            ||||||.|||||..|||..||..|.||| ||| ||.||||....|||||.||.||||||||   ||.|.||   
Sbjct  987  CATGGCAGGTCACAGCATGGTCCTGGTG-GAAGTTCTGGACGTGAATGACAATGTCCCTGA---AGTAATGGTT  1056

Query 1057  ACTTCCTTATCCTTGCCTGTACGTGAAGACGCTCAATTTGGTACTGTCATCGCCCTAATTAGCGTGAACGACCT  1130
            |||||..|.||..|.|||||.|..||.||.|||||..|.|||||.|||||.|||||.|||||||||...||.|.
Sbjct 1057  ACTTCACTGTCGCTCCCTGTGCAAGAGGATGCTCAGGTGGGTACCGTCATTGCCCTGATTAGCGTGTCGGATCG  1130

Query 1131  CGATTCAGGTGCCAACGGGCAGGTGAACTGCTCGCTGACGCCTCACGTCCCTTTCAAGCTGGTGTCCACCTTCA  1204
            .||.||.||.|||||.||.|||||.|.||||||.|||||.|||||.||.||.|||||||||||||||||||.||
Sbjct 1131  TGACTCTGGAGCCAATGGACAGGTCATCTGCTCACTGACACCTCATGTTCCCTTCAAGCTGGTGTCCACCTACA  1204

Query 1205  AGAATTACTACTCGTTGGTGCTGGACAGTGCCCTGGACCGCGAGAGCGTGTCGGCCTATGAGTTGGTGGTGACC  1278
            ||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||.||||||||||.
Sbjct 1205  AGAATTACTACTCGTTGGTGCTGGACAGCGCCCTGGACCGCGAGAGCGTGTCGGCCTATGAGCTGGTGGTGACT  1278

Query 1279  GCGCGGGACGGGGGCTCGCCTTCGCTGTGGGCCACAGCCAGCTTGTCTGTGGAGGTGGCCGACATGAATGACAA  1352
            ||||||||.||||||||||||||||||||||||||.||.||..||||.|||||||||||||||.||||.|||||
Sbjct 1279  GCGCGGGATGGGGGCTCGCCTTCGCTGTGGGCCACGGCTAGAGTGTCCGTGGAGGTGGCCGACGTGAACGACAA  1352

Query 1353  TGCTCCGGCGTTCGCGCAGCCCGAGTACACAGTGTTCGTGAAGGAGAACAACCCGCCGGGCTGCCACATCTTCA  1426
            |||.||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1353  TGCGCCTGCGTTCGCGCAGCCCGAGTACACAGTGTTCGTGAAGGAGAACAACCCGCCGGGCTGCCACATCTTCA  1426

Query 1427  CGGTGTCTGCGCGAGACGCGGACGCGCAGGAGAACGCGCTGGTGTCCTACTCGCTGGTGGAGCGGCGGGTGGGC  1500
            |||||||.||..|.|||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1427  CGGTGTCGGCATGGGACGCGGACGCGCAGAAGAACGCGCTGGTGTCCTACTCGCTGGTGGAGCGGCGGGTGGGC  1500

Query 1501  GAGCGCGCGTTGTCGAGCTACATTTCGGTGCACGCGGAGAGCGGCAAGGTGTACGCGCTGCAGCCGCTGGACCA  1574
            ||||.|||..|||||||||||.|.||||||||||||||||||||||||||||||||||||||||||||.|||||
Sbjct 1501  GAGCACGCACTGTCGAGCTACGTGTCGGTGCACGCGGAGAGCGGCAAGGTGTACGCGCTGCAGCCGCTAGACCA  1574

Query 1575  CGAGGAGCTAGAGCTGCTGCAGTTTCAGGTGAGCGCGCGCGACGCGGGCGTGCCGCCTCTGGGCAGCAACGTGA  1648
            |||||||||.||||||||||||||.||||||||||||||||||||.||||||||||||||||||||||||||||
Sbjct 1575  CGAGGAGCTGGAGCTGCTGCAGTTCCAGGTGAGCGCGCGCGACGCCGGCGTGCCGCCTCTGGGCAGCAACGTGA  1648

Query 1649  CGCTGCAGGTGTTCGTGCTGGACGAGAACGACAACGCGCCGGCGCTGCTGGCGCCTCGGGTGGGTGGTACTGGT  1722
            |||||||||||||||||||||||||||||||||||||||||||.|||||||||.|||.||..||..|..|.||.
Sbjct 1649  CGCTGCAGGTGTTCGTGCTGGACGAGAACGACAACGCGCCGGCACTGCTGGCGACTCCGGCTGGCAGCGCAGGA  1722

Query 1723  GGTGCAGTGAGCGAGCTGGTGCCGCGGTCACTGGGTGCAGGCCAAGTGGTGGCGAAGGTGCGCGCAGTTGACGC  1796
            ||.|||||.||||||.||||.||||||||..|||||||.|||||.|||||||||||.||||||||.||.|||||
Sbjct 1723  GGCGCAGTTAGCGAGTTGGTACCGCGGTCGGTGGGTGCGGGCCACGTGGTGGCGAAAGTGCGCGCGGTGGACGC  1796

Query 1797  CGACTCAGGCTACAACGCGTGGCTTTCGTATGAGCTGCAGCCCCCGGCAAGCAGCGCTCGCTTCCCGTTTCGCG  1870
            .|||||.|||||.|||||.|||||.||.||.|||.||||.||..||||...|.||||.|.|.|||||||.|.||
Sbjct 1797  TGACTCCGGCTATAACGCTTGGCTGTCCTACGAGTTGCAACCGGCGGCGGTCGGCGCGCACATCCCGTTCCACG  1870

Query 1871  TGGGGCTGTACACGGGCGAGATCAGCACCACTCGTGTCCTGGACGAAGCGGACTCTCCGCGCCACCGGCTGCTG  1944
            |||||||||||||.||||||||||||||.||.||..|||||||.||.||||||.|||||||||||||.||||||
Sbjct 1871  TGGGGCTGTACACTGGCGAGATCAGCACGACACGCATCCTGGATGAGGCGGACGCTCCGCGCCACCGCCTGCTG  1944

Query 1945  GTGCTGGTGAAAGACCACGGTGAGCCGGCGCTGACAGCGACGGCCACGGTTCTGGTGTCGCTGGTGGAGAGTGG  2018
            |||||||||||.||||||||||||||.||||||||..|.|||||||||||.|||||||||||||||||||..||
Sbjct 1945  GTGCTGGTGAAGGACCACGGTGAGCCCGCGCTGACGTCCACGGCCACGGTGCTGGTGTCGCTGGTGGAGAACGG  2018

Query 2019  CCAGGCTCCAAAGGCGTCATCACGGGCGTCGGTGGGCGCCGCGGGCCCAGAGGCGGCGCTGGTGGATGTCAACG  2092
            ||||||.||||||.||||.||.|||||.||.||||||||.|.||..||.||.|||||.|||||||||.|.||||
Sbjct 2019  CCAGGCCCCAAAGACGTCGTCGCGGGCCTCAGTGGGCGCTGTGGATCCCGAAGCGGCTCTGGTGGATATTAACG  2092

Query 2093  TGTACCTGATCATCGCCATCTGCGCGGTATCCAGCCTGCTGGTCCTCACGCTACTGCTGTACACAGCGCTGCGG  2166
            |||||||.||||||||||||||.|||||.||||||||||||||.||||||||.|||||||||||.||||||||.
Sbjct 2093  TGTACCTCATCATCGCCATCTGTGCGGTGTCCAGCCTGCTGGTGCTCACGCTGCTGCTGTACACTGCGCTGCGT  2166

Query 2167  TGCTCGGCGCCACCCACCGAGGGCGCGTGCACGGCGGACAAGCCCACGCTGGTGTGCTCCAGCGCAGTGGGGAG  2240
            |||||.|||||.|||||||.|.||..||||.||.|||.|||||||||||||||||||||||||||.||||||||
Sbjct 2167  TGCTCAGCGCCGCCCACCGTGAGCCGGTGCGCGCCGGGCAAGCCCACGCTGGTGTGCTCCAGCGCCGTGGGGAG  2240

Query 2241  CTGGTCGTACTCGCAGCAGAGGCGGCAGAGGGTGTGCTCCGGGGAGGGCCCACCCAAGATGGATCTCATGGCCT  2314
            .|||||.|||||||||||||||.||||||||||||||||.|..|||.||||.|||||||.|||.||||||||||
Sbjct 2241  TTGGTCTTACTCGCAGCAGAGGAGGCAGAGGGTGTGCTCTGCAGAGAGCCCGCCCAAGACGGACCTCATGGCCT  2314

Query 2315  TTAGCCCCAGCCTTTCACCT-TGTCCTATTATGATGGGTAAGGCGGAGAATCAGGA---TTTAAATGAAGATCA  2384
            |.|||||.|||| ||||.|| |.||                    |||||    ||   |||||         |
Sbjct 2315  TCAGCCCAAGCC-TTCAGCTGTCTC--------------------GAGAA----GATTGTTTAA---------A  2354

Query 2385  TGATGCCA---AACCACGACAGCCCAACCCTGACTGGCGTTACTCTGCCTCCCTGAGAGCAGGCATGCACAGCT  2455
            |..|.|||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2355  TCCTCCCAGTGAACCACGACAGCCCAACCCTGACTGGCGTTACTCTGCCTCCCTGAGAGCAGGCATGCACAGCT  2428

Query 2456  CTGTGCACCTAGAGGAGGCTGGCATTCTACGGGCTGGTCCAGGAGGGCCTGATCAGCAGTGGCCAACAGTATCC  2529
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2429  CTGTGCACCTAGAGGAGGCTGGCATTCTACGGGCTGGTCCAGGAGGGCCTGATCAGCAGTGGCCAACAGTATCC  2502

Query 2530  AGTGCAACACCAGAACCAGAGGCAGGAGAAGTGTCCCCTCCAGTCGGTGCGGGTGTCAACAGCAACAGCTGGAC  2603
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2503  AGTGCAACACCAGAACCAGAGGCAGGAGAAGTGTCCCCTCCAGTCGGTGCGGGTGTCAACAGCAACAGCTGGAC  2576

Query 2604  CTTTAAATACGGACCAGGCAACCCCAAACAATCCGGTCCCGGTGAGTTGCCCGACAAATTCATTATCCCAGGAT  2677
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2577  CTTTAAATACGGACCAGGCAACCCCAAACAATCCGGTCCCGGTGAGTTGCCCGACAAATTCATTATCCCAGGAT  2650

Query 2678  CTCCTGCAATCATCTCCATCCGGCAGGAGCCTACTAACAGCCAAATTGACAAAAGTGACTTCATAACCTTCGGC  2751
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2651  CTCCTGCAATCATCTCCATCCGGCAGGAGCCTACTAACAGCCAAATTGACAAAAGTGACTTCATAACCTTCGGC  2724

Query 2752  AAAAAGGAGGAGACCAAGAAAAAGAAGAAAAAGAAGAAGGGTAACAAGACCCAGGAGAAAAAAGAGAAAGGGAA  2825
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2725  AAAAAGGAGGAGACCAAGAAAAAGAAGAAAAAGAAGAAGGGTAACAAGACCCAGGAGAAAAAAGAGAAAGGGAA  2798

Query 2826  CAGCACGACTGACAACAGTGACTAG  2850
            ||||||||||||||||||||||.||
Sbjct 2799  CAGCACGACTGACAACAGTGACCAG  2823

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.