Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_10461
Subject:
NM_018905.3
Aligned Length:
2932
Identities:
2397
Gaps:
170

Alignment

Query    1  ATGGTGTTTAC------------CCCGGAGGATAGATTG----GGAAAGCAATGTCTGCTCCTCCCGCTTCTGC  58
            ||||.||.|.|            ||  ||||       |    |||.|       |.|||.|||.|||||||||
Sbjct    1  ATGGCGTCTTCTATCAGAAGGGGCC--GAGG-------GGCCTGGACA-------CGGCTGCTCTCGCTTCTGC  58

Query   59  TCCTCGCAGCCTGGAAGGTGGGGAGCGGCCAGCTCCACTACTCCGTACCCGAGGAGGCCAAACACGGCACCTTC  132
            ||||||||||||||.|||||||||||||||||||||.|||||||||.|||||||||||||||||||||||||||
Sbjct   59  TCCTCGCAGCCTGGGAGGTGGGGAGCGGCCAGCTCCGCTACTCCGTCCCCGAGGAGGCCAAACACGGCACCTTC  132

Query  133  GTGGGCCGGATCGCGCAGGACCTGGGGCTGGAGCTGGCGGAGCTGGTGCCGCGCCTGTTCAGGATGGCCTCC-A  205
            ||||||||.||||||||||||||||||||||||||||.||||||||||||||||||||||.||.||||.||| |
Sbjct  133  GTGGGCCGCATCGCGCAGGACCTGGGGCTGGAGCTGGAGGAGCTGGTGCCGCGCCTGTTCCGGGTGGCGTCCAA  206

Query  206  AAGACCGCGAGGACCTTCTGGAGGTAAATCTGCAGAATGGCATTTTGTTTGTGAATTCTCGGATCGACCGCGAG  279
            |||| |.||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||
Sbjct  207  AAGA-CACGGGGACCTTCTGGAGGTAAATCTGCAGAATGGCATTTTGTTTGTGAATTCTCGGATCGACCGGGAG  279

Query  280  GAGCTGTGCGGGCGGAGCGCGGAGTGCAGCATCCACCTGGAGGTGATCGTGGACAGGCCGCTGCAGGTTTTCCA  353
            |||||||||||||||||||||||.||.|||||||||.|||||||||||||||||||||||||||||||||||||
Sbjct  280  GAGCTGTGCGGGCGGAGCGCGGAATGTAGCATCCACGTGGAGGTGATCGTGGACAGGCCGCTGCAGGTTTTCCA  353

Query  354  TGTGGACGTGGAGGTGAGGGACATTAACGACAACCCGCCCTTGTTCCCGGT-AGAGGAACAAAGA--GTGCTGA  424
            ||||||.||||||||||.|||||||||||||||||||||..|.||.||..| |.||   .|||||  .|.|.|.
Sbjct  354  TGTGGAAGTGGAGGTGAAGGACATTAACGACAACCCGCCAATATTTCCAATGACAG---TAAAGACTATCCGGT  424

Query  425  TTTACGAATCTAGGCTGCCAGATTCTGTGTTTCCACTGGAGGGCGCGTCCGATGCAGATGTTGGCTCAAATTCC  498
            ||..||||||.|||||||..||||||..||||||.||.|||||.||.||.|||||||||.|.||...||||.| 
Sbjct  425  TTCCCGAATCAAGGCTGCTTGATTCTCGGTTTCCTCTAGAGGGAGCATCTGATGCAGATATAGGAGTAAATGC-  497

Query  499  ATCT--TAACCTATAAACTCAGTTCTAGCGAATACTTCGGGCTAGATGTGAAAATAAACAG-----TGATGACA  565
             |||  |..||||.||.|||||.||.||.||.|..|||...||||        |||.||||     |||||| |
Sbjct  498  -TCTTCTCTCCTACAAGCTCAGCTCCAGTGAGTTTTTCTTCCTAG--------ATATACAGGCAAATGATGA-A  561

Query  566  ATAAACAAA--TTGGGCTCT--TATTAAAGAAATCCTTGGACAGAGAGGAAGCTCCTGCACACAACTTATTCCT  635
            .|||.|.||  ||.|.||||  |..|...||||||..||||||||||||||.||.|||.....||.||.||.||
Sbjct  562  CTAAGCGAATCTTTGTCTCTCGTGCTGGGGAAATCGCTGGACAGAGAGGAAACTGCTGAGGTTAATTTGTTACT  635

Query  636  GACAGCCACAGATGGGGGCAAACCTGAGCTCACAGGCACTGTTCAGCTGCTGGTCACAGTGCTGGATGTGAATG  709
            |...||.||.|||||||||||||||||||||||.|||||.|||||..|.||..|.|..||..|.|||||.||||
Sbjct  636  GGTGGCTACTGATGGGGGCAAACCTGAGCTCACGGGCACCGTTCAAATACTTATTAAGGTATTAGATGTAAATG  709

Query  710  ATAATGCTCCCACTTTCGAACAGTCTGAATACGAAGTAAGAATATTCGAAAATGCAGACAACGGAACAAC----  779
            |.||||..||.|||||.|..||.||.|..|||.||||||.|.|.||.||.|||.|.|..||.||.||  |    
Sbjct  710  ACAATGAACCAACTTTTGCCCAATCAGTTTACAAAGTAAAATTGTTAGAGAATACGGCAAATGGGAC--CTTAG  781

Query  780  ------AGTTATCAGACTGAATGCTTCTGATCGGGATGAAGGAGCGAATGGGGCAATTTCATATTCTTTTAATA  847
                  |||||        ||.|||||||||...|||||||||.||||..|.|..|||...|||||..|...||
Sbjct  782  TGGTTAAGTTA--------AACGCTTCTGATGCAGATGAAGGACCGAACAGCGAGATTGTGTATTCACTCGGTA  847

Query  848  GCCTTGTTGCAGCCATGGTTAT--TGAC-CACTTTAGCATAGATC-----------GAAATACGGGAGAAATAG  907
            |...|||..|..|||   .|||  .||| .|.||||.||||||||           |||||    .||||.|| 
Sbjct  848  GTGATGTGTCCTCCA---CTATACAGACTAAGTTTACCATAGATCCCATCTCAGGGGAAAT----CAGAACTA-  913

Query  908  TGATTCGGGGTAATTTGGATTTTGAACAAGAAAACTTATACAAAATCC---TCATTGACGCCACGGACAAAGG-  977
                  .|||.||.||.||||.||||.|||.|||.|..|||.|.||.|   |||.|   ||.||.|||||||| 
Sbjct  914  ------AGGGAAAATTAGATTATGAAGAAGCAAAGTCCTACGAGATTCAGGTCACT---GCAACTGACAAAGGA  978

Query  978  -CCATCCTCCCATGGCGGGTCATTGCACCGTTTTAGTGAGAATTTTGGATAAAAATGATAACGTCCCTGAGATA  1050
             ||  |||.|.|||.|.||.|||||.|...|||.|.|.|.|.||.||||.|..|||||||||...||.||..|.
Sbjct  979  ACC--CCTTCAATGTCAGGACATTGTAAAATTTCATTAAAACTTGTGGACATCAATGATAACACACCAGAAGTC  1050

Query 1051  GCACTGACTTCCTTATC-CTTGCC-TGTACGTGAAGACGCTCAATTTGGTACTGTCATCGCCCTAATTAGCGTG  1122
            .||.|.||.||..|.|| |||.|| |.|..|.||  |||||....|.||.||||||||.||.||.||.|..|||
Sbjct 1051  TCAATAACGTCTCTCTCACTTCCCATCTCAGAGA--ACGCTTCCCTGGGCACTGTCATTGCTCTCATCACGGTG  1122

Query 1123  AACGACCTCGATTCAGGTGCCAACGGGCAGGTGAACTGCTCGCTGACGCCTCACGTCCCTTTCAAGCTGGTGTC  1196
            ...||.|.|||.||.|||.|.||.||.||.||.|.||||||.||||||||.|||||||||||||||||||||||
Sbjct 1123  TCGGATCGCGACTCTGGTACGAATGGACATGTCACCTGCTCCCTGACGCCCCACGTCCCTTTCAAGCTGGTGTC  1196

Query 1197  CACCTTCAAGAATTACTACTCGTTGGTGCTGGACAGTGCCCTGGACCGCGAGAGCGTGTCGGCCTATGAGTTGG  1270
            ||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||.|||||||||.|||
Sbjct 1197  CACCTTCAAGAATTACTACTCGTTGGTGCTGGACAGCGCCCTGGACCGCGAGAGCGTGTCAGCCTATGAGCTGG  1270

Query 1271  TGGTGACCGCGCGGGACGGGGGCTCGCCTTCGCTGTGGGCCACAGCCAGCTTGTCTGTGGAGGTGGCCGACATG  1344
            ||||||||||.||||||||||||||||||||.|||||||||||..|||||.||||..|.||||||||||||.||
Sbjct 1271  TGGTGACCGCACGGGACGGGGGCTCGCCTTCACTGTGGGCCACCACCAGCGTGTCCATCGAGGTGGCCGACGTG  1344

Query 1345  AATGACAATGCTCCGGCGTTCGCGCAGCCCGAGTACACAGTGTTCGTGAAGGAGAACAACCCGCCGGGCTGCCA  1418
            ||.|||||.||.|||||||||||.|||||.|||||||||||.||||||||||||||||||||||||||||||||
Sbjct 1345  AACGACAACGCGCCGGCGTTCGCACAGCCTGAGTACACAGTATTCGTGAAGGAGAACAACCCGCCGGGCTGCCA  1418

Query 1419  CATCTTCACGGTGTCTGCGCGAGACGCGGACGCGCAGGAGAACGCGCTGGTGTCCTACTCGCTGGTGGAGCGGC  1492
            |||||||||||||||.|||.|.||.|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1419  CATCTTCACGGTGTCAGCGTGGGATGCGGACGCGCAGGAGAACGCGCTGGTGTCCTACTCGCTGGTGGAGCGGC  1492

Query 1493  GGGTGGGCGAGCGCGCGTTGTCGAGCTACATTTCGGTGCACGCGGAGAGCGGCAAGGTGTACGCGCTGCAGCCG  1566
            |||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1493  GGGTGGGCGAGCGCGCGTTGTCGAGCTACGTTTCGGTGCACGCGGAGAGCGGCAAGGTGTACGCGCTGCAGCCG  1566

Query 1567  CTGGACCACGAGGAGCTAGAGCTGCTGCAGTTTCAGGTGAGCGCGCGCGACGCGGGCGTGCCGCCTCTGGGCAG  1640
            ||||||||||||||..|.||||||||||||||.||||||||||||||.||.|||||||||||||||||||||||
Sbjct 1567  CTGGACCACGAGGAAGTGGAGCTGCTGCAGTTCCAGGTGAGCGCGCGGGATGCGGGCGTGCCGCCTCTGGGCAG  1640

Query 1641  CAACGTGACGCTGCAGGTGTTCGTGCTGGACGAGAACGACAACGCGCCGGCGCTGCTGGCGCCTCGGGTGGGTG  1714
            |||||||||||||||||||||||||||||||||||||||||||||||||||.|||.||||||||.|   ||.||
Sbjct 1641  CAACGTGACGCTGCAGGTGTTCGTGCTGGACGAGAACGACAACGCGCCGGCACTGTTGGCGCCTAG---GGCTG  1711

Query 1715  GTA---CTGGTGGTGCAGTGAGCGAGCTGGTGCCGCGGTCACTGGGTGCAGGCCAAGTGGTGGCGAAGGTGCGC  1785
            |.|   |||.|||.||||||||.||||||||||||.||||..||||||||||.||.||||||||||||||||||
Sbjct 1712  GCACCGCTGCTGGCGCAGTGAGTGAGCTGGTGCCGTGGTCGGTGGGTGCAGGGCACGTGGTGGCGAAGGTGCGC  1785

Query 1786  GCAGTTGACGCCGACTCAGGCTACAACGCGTGGCTTTCGTATGAGCTGCAGCCCCCGG---CAAGCAGCGCTCG  1856
            |||||.|||||.|||||||||||||||||||||||||||||.|||||.|||   |.||   |..||||||||||
Sbjct 1786  GCAGTGGACGCTGACTCAGGCTACAACGCGTGGCTTTCGTACGAGCTTCAG---CTGGGTACTGGCAGCGCTCG  1856

Query 1857  CTTCCCGTTTCGCGTGGGGCTGTACACGGGCGAGATCAGCACCACTCGTGTCCTGGACGAAGCGGACTCTCCGC  1930
            |.|||||||.|||||||||||.||||||||.|||||||||||.||.||||.|||.|||||.||.|||||.||.|
Sbjct 1857  CATCCCGTTCCGCGTGGGGCTATACACGGGTGAGATCAGCACGACACGTGCCCTAGACGAGGCTGACTCCCCTC  1930

Query 1931  GCCACCGGCTGCTGGTGCTGGTGAAAGACCACGGTGAGCCGGCGCTGACAGCGACGGCCACGGTTCTGGTGTCG  2004
            |.|||||.||.||.|||||||||||.||||||||.||.||.|||.|||||||.||||||||.||..|.||||||
Sbjct 1931  GACACCGCCTACTCGTGCTGGTGAAGGACCACGGCGAACCAGCGTTGACAGCCACGGCCACCGTGTTAGTGTCG  2004

Query 2005  CTGGTGGAGAGTGGCCAGGCTCCAAAGGCGTCATCACGGGCGTCGGTGGGCGCCGCGGGCCCAGAGGCGGCGCT  2078
            .|||||||.|||||||||||.||.|||||.||.||.|||||||.||||||||||||||||.|||||||..||||
Sbjct 2005  TTGGTGGAAAGTGGCCAGGCACCCAAGGCCTCGTCGCGGGCGTGGGTGGGCGCCGCGGGCTCAGAGGCTACGCT  2078

Query 2079  GGTGGATGTCAACGTGTACCTGATCATCGCCATCTGCGCGGTATCCAGCCTGCTGGTCCTCACGCTACTGCTGT  2152
            ||||||||||||||||||||||||||||||||||||||||||||||||||||.||||.||||||.|.|||||||
Sbjct 2079  GGTGGATGTCAACGTGTACCTGATCATCGCCATCTGCGCGGTATCCAGCCTGTTGGTGCTCACGGTGCTGCTGT  2152

Query 2153  ACACAGCGCTGCGGTGCTCGGCGCCACCCACCGAGGGCGCGTGCACGGC-GGACAAGCCCACGCTGGTGTGCTC  2225
            ||||.||||||||||||||||.|||||||||||||||.|||.||.||.| ||| ||||||||||||||||||||
Sbjct 2153  ACACTGCGCTGCGGTGCTCGGTGCCACCCACCGAGGGTGCGCGCGCGCCAGGA-AAGCCCACGCTGGTGTGCTC  2225

Query 2226  CAGCGCAGTGGGGAGCTGGTCGTACTCGCAGCAGAGGCGGCAGAGGGTGTGCTCCGGGGAGGGCCCACCCAAGA  2299
            ||||||.||||||||||||||.||||||||||||||||||||||||||||||||.|||||||.|||.|||||||
Sbjct 2226  CAGCGCCGTGGGGAGCTGGTCTTACTCGCAGCAGAGGCGGCAGAGGGTGTGCTCTGGGGAGGACCCCCCCAAGA  2299

Query 2300  TGGATCTCATGGCCTTTAGCCCCAGCCTTTCACCTTGTCCTATTA--------TGATGGGTAAGGCGG-----A  2360
            .|||.|||||||||||.|||||.|||.|.||.|...||||    |        .||.|.|.||  |.|     |
Sbjct 2300  CGGACCTCATGGCCTTCAGCCCTAGCTTATCTCAAGGTCC----AGACTCCGCAGAAGAGAAA--CAGCTCTCA  2367

Query 2361  GAATCAGGATTTAAATGAAGATCATGATGCCAAACCACGACAGCCCAACCCTGACTGGCGTTACTCTGCCTCCC  2434
            |||||||.||    |.|.||     ||    ||.||||||||||||||||||||||||||||||||||||||||
Sbjct 2368  GAATCAGAAT----ACGTAG-----GA----AAGCCACGACAGCCCAACCCTGACTGGCGTTACTCTGCCTCCC  2428

Query 2435  TGAGAGCAGGCATGCACAGCTCTGTGCACCTAGAGGAGGCTGGCATTCTACGGGCTGGTCCAGGAGGGCCTGAT  2508
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2429  TGAGAGCAGGCATGCACAGCTCTGTGCACCTAGAGGAGGCTGGCATTCTACGGGCTGGTCCAGGAGGGCCTGAT  2502

Query 2509  CAGCAGTGGCCAACAGTATCCAGTGCAACACCAGAACCAGAGGCAGGAGAAGTGTCCCCTCCAGTCGGTGCGGG  2582
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2503  CAGCAGTGGCCAACAGTATCCAGTGCAACACCAGAACCAGAGGCAGGAGAAGTGTCCCCTCCAGTCGGTGCGGG  2576

Query 2583  TGTCAACAGCAACAGCTGGACCTTTAAATACGGACCAGGCAACCCCAAACAATCCGGTCCCGGTGAGTTGCCCG  2656
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2577  TGTCAACAGCAACAGCTGGACCTTTAAATACGGACCAGGCAACCCCAAACAATCCGGTCCCGGTGAGTTGCCCG  2650

Query 2657  ACAAATTCATTATCCCAGGATCTCCTGCAATCATCTCCATCCGGCAGGAGCCTACTAACAGCCAAATTGACAAA  2730
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2651  ACAAATTCATTATCCCAGGATCTCCTGCAATCATCTCCATCCGGCAGGAGCCTACTAACAGCCAAATTGACAAA  2724

Query 2731  AGTGACTTCATAACCTTCGGCAAAAAGGAGGAGACCAAGAAAAAGAAGAAAAAGAAGAAGGGTAACAAGACCCA  2804
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2725  AGTGACTTCATAACCTTCGGCAAAAAGGAGGAGACCAAGAAAAAGAAGAAAAAGAAGAAGGGTAACAAGACCCA  2798

Query 2805  GGAGAAAAAAGAGAAAGGGAACAGCACGACTGACAACAGTGACTAG  2850
            |||||||||||||||||||||||||||||||||||||||||||.||
Sbjct 2799  GGAGAAAAAAGAGAAAGGGAACAGCACGACTGACAACAGTGACCAG  2844

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