Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_10461
Subject:
NM_018906.3
Aligned Length:
2912
Identities:
2422
Gaps:
124

Alignment

Query    1  ATGGTGTTTAC-CCCGGAG-GATAGAT--TGGGAAAG--CAATGTCTGCTCCTCCCGCTTCTGCTCCTCGCAGC  68
            |||.||||  | ||.||.| || ||||  |||   ||  ||.||.|||||.||..|.|||||||||||||||||
Sbjct    1  ATGTTGTT--CTCCTGGCGAGA-AGATCCTGG---AGCCCAGTGCCTGCTGCTTTCTCTTCTGCTCCTCGCAGC  68

Query   69  CTGGAAGGTGGGGAGCGGCCAGCTCCACTACTCCGTACCCGAGGAGGCCAAACACGGCACCTTCGTGGGCCGGA  142
            ||.|.|||||||||||||||||||||||||||||||..|.|||||||||||.||.|||||||||||||||||.|
Sbjct   69  CTCGGAGGTGGGGAGCGGCCAGCTCCACTACTCCGTCTCTGAGGAGGCCAAGCATGGCACCTTCGTGGGCCGCA  142

Query  143  TCGCGCAGGACCTGGGGCTGGAGCTGGCGGAGCTGGTGCCGCGCCTGTTCAGGATGGCCTCC-AAAGACCGCGA  215
            ||||||||||||||||||||||||||||||||||||||||||||||||||.||.||||.||| ||||| |.||.
Sbjct  143  TCGCGCAGGACCTGGGGCTGGAGCTGGCGGAGCTGGTGCCGCGCCTGTTCCGGGTGGCGTCCAAAAGA-CACGG  215

Query  216  GGACCTTCTGGAGGTAAATCTGCAGAATGGCATTTTGTTTGTGAATTCTCGGATCGACCGCGAGGAGCTGTGCG  289
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||.|||||||
Sbjct  216  GGACCTTCTGGAGGTAAATCTGCAGAATGGCATTTTGTTTGTGAATTCTCGGATAGACCGCGAGGAACTGTGCG  289

Query  290  GGCGGAGCGCGGAGTGCAGCATCCACCTGGAGGTGATCGTGGACAGGCCGCTGCAGGTTTTCCATGTGGACGTG  363
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||
Sbjct  290  GGCGGAGCGCGGAGTGCAGCATCCACCTGGAGGTGATCGTGGACAGGCCGCTGCAGGTTTTCCATGTGGAGGTG  363

Query  364  GAGGTGAGGGACATTAACGACAACCCGCC-CTTGTTCC-----CGGTAGAGGAACAAAGAGTGCTGATTTACGA  431
            ||.||||.|||||||||.||||||.|||| .||.||||     |.|||.||.|.|      ||.|.||||.|||
Sbjct  364  GAAGTGAAGGACATTAATGACAACGCGCCAGTTTTTCCAATGGCTGTAAAGAATC------TGTTTATTTCCGA  431

Query  432  ATCTAGGCTGCCAGATTCTGTGTTTCCACTGGAGGGCGCGTCCGATGCAGATGTTGGCTCAAATTCCATCTTAA  505
            |||..|.|.|||.|..|||..||||.|.||.||||||||.||.|||||||||.|.||..|||||||..|.||.|
Sbjct  432  ATCCCGACAGCCTGGCTCTCGGTTTTCGCTAGAGGGCGCATCAGATGCAGATATCGGAACAAATTCGTTGTTGA  505

Query  506  CCTATAAACTCAGTTCTAGCGAATACTTCGGGCTA-----GATGTGAAAATAAACAGTGATGACAATAAACAAA  574
            |.||.|..||...|||.|..|||||.||     ||     ||.||.||||.|||   ||||||..| ||..|||
Sbjct  506  CTTACAGTCTTGATTCCACTGAATATTT-----TACCTTGGACGTTAAAAGAAA---TGATGAGGA-AATTAAA  570

Query  575  ----TTGGGCTCTTATT--AAAGAAATCCTTGGACAGAGAGGAAGCTCCTGCACACAACTTATTCCTGACAGCC  642
                ||||.|||.|.||  |||.||||  ||..|..|||||||..|||||...||..|.|||.|..|.|||||.
Sbjct  571  TCCCTTGGACTCGTGTTGAAAAAAAAT--TTAAATCGAGAGGACACTCCTAAGCATTATTTACTAATAACAGCA  642

Query  643  ACAGATGGGGGCAAACCTGAGCTCACAGGCACTGTTCAGCTGCTGGTCACAGTGCTGGATGTGAATGATAATGC  716
            |..|||||.||.|||||.||||||||.|||||...|||.||...|.||||.||..|.|||||.||.||.||.||
Sbjct  643  ATTGATGGTGGGAAACCAGAGCTCACTGGCACGACTCAACTAAAGATCACTGTTTTAGATGTAAACGACAACGC  716

Query  717  TCCCA-CTTTCGA----ACAGTCTGAATACGAAGTAAGAATATTCGAAAATGCAGACAACGGAACAACAGTTAT  785
             |||| |.||.||    ||..|||  |||  ||||.|||.||.|||||||||||...||.||.||...|||..|
Sbjct  717  -CCCAGCGTTTGAGAGGACGATCT--ATA--AAGTCAGATTACTCGAAAATGCACCAAATGGTACCCTAGTGGT  785

Query  786  CAGAC--TGAATGCTTCTGATCGGGATGAAGGAGCGAATGGGGCAATTTCATATTCTTTTAATA--GCCTTGTT  855
              |||  |.||.||..|.|||..|||||||||||..|||..||..||..|.||||||||.||||  |.|.||| 
Sbjct  786  --GACCGTTAACGCCACCGATTTGGATGAAGGAGTAAATAAGGATATCGCGTATTCTTTCAATACGGACATGT-  856

Query  856  GCAGCCATGGTTATTGACCACTTTAGCA----------TAGATCGA---AATACGGGAGAAAT-AGTGATTCGG  915
             ||||   .|.||||     ||.|  ||          ||||||.|   |||   |||.|||| |||| |...|
Sbjct  857  -CAGC---AGATATT-----CTGT--CAAAATTCCATTTAGATCCAGTCAAT---GGACAAATCAGTG-TAAAG  915

Query  916  GGTAATTTGGATTTTGAACAAGAAAACTTATACAAAATCCTCATTGACGCCACGGACAAAGGCCATCCTCCCAT  989
            |||||..|.|||||.||..||...||.|.|||..||||||...|.||.||||||||.|||||..||||.||.||
Sbjct  916  GGTAACATAGATTTCGAGGAAAGTAAGTCATATGAAATCCAGGTAGAAGCCACGGATAAAGGAAATCCCCCAAT  989

Query  990  GGCGGGTCATTGCACCGTTTTAGT-GAGAATTTTGGATAAAAATGATAACGTCCCTGAGATAG-----CACTGA  1057
            |.|.|.|||.|||||.|||.||.| || ||||.||||.|..||||||||.||.||||||.|||     ||.|.|
Sbjct  990  GTCAGATCACTGCACAGTTCTACTCGA-AATTGTGGACATCAATGATAATGTACCTGAGTTAGTTATTCAATCA  1062

Query 1058  CTTCCTTATCCTTGCCTGTACGTGAAGACGCTCAATTTGGTACTGTCATCGCCCTAATTAGCGTGAACGACCTC  1131
            |     ||||.||.||||||...||||||.|||.|.||.|.||.||||||||.||.||.||||||..|||||.|
Sbjct 1063  C-----TATCTTTACCTGTATTAGAAGACTCTCCACTTAGCACAGTCATCGCTCTGATCAGCGTGTCCGACCGC  1131

Query 1132  GATTCAGGTGCCAACGGGCAGGTGAACTGCTCGCTGACGCCTCACGTCCCTTTCAAGCTGGTGTCCACCTTCAA  1205
            ||.|||||.|.|||.||.|||||.|.|||||||||||||||.||||||||.|||||||||||||||||||||||
Sbjct 1132  GACTCAGGAGTCAATGGACAGGTCACCTGCTCGCTGACGCCCCACGTCCCCTTCAAGCTGGTGTCCACCTTCAA  1205

Query 1206  GAATTACTACTCGTTGGTGCTGGACAGTGCCCTGGACCGCGAGAGCGTGTCGGCCTATGAGTTGGTGGTGACCG  1279
            ||||||||||||.||||||||||||||..|.||||||||||||||||||||||||||||||.||||||||||.|
Sbjct 1206  GAATTACTACTCATTGGTGCTGGACAGCCCTCTGGACCGCGAGAGCGTGTCGGCCTATGAGCTGGTGGTGACTG  1279

Query 1280  CGCGGGACGGGGGCTCGCCTTCGCTGTGGGCCACAGCCAGCTTGTCTGTGGAGGTGGCCGACATGAATGACAAT  1353
            |.||||||||||||||||||||.|||||||||||.||||||.||||.|||||||||||||||.||||.||||||
Sbjct 1280  CTCGGGACGGGGGCTCGCCTTCACTGTGGGCCACGGCCAGCGTGTCCGTGGAGGTGGCCGACGTGAACGACAAT  1353

Query 1354  GCTCCGGCGTTCGCGCAGCCCGAGTACACAGTGTTCGTGAAGGAGAACAACCCGCCGGGCTGCCACATCTTCAC  1427
            ||.|||||.|||.|||||.||||||||||.||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1354  GCGCCGGCATTCTCGCAGTCCGAGTACACGGTGTTCGTGAAGGAGAACAACCCGCCGGGCTGCCACATCTTCAC  1427

Query 1428  GGTGTCTGCGCGAGACGCGGACGCGCAGGAGAACGCGCTGGTGTCCTACTCGCTGGTGGAGCGGCGGGTGGGCG  1501
            ||||||||||||.|||||||||||||||||||||||.|||||||||||||||||||||||.|||||||||||.|
Sbjct 1428  GGTGTCTGCGCGGGACGCGGACGCGCAGGAGAACGCCCTGGTGTCCTACTCGCTGGTGGAACGGCGGGTGGGGG  1501

Query 1502  AGCGCGCGTTGTCGAGCTACATTTCGGTGCACGCGGAGAGCGGCAAGGTGTACGCGCTGCAGCCGCTGGACCAC  1575
            ||||||||.|||||||||||.|.|||||.|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1502  AGCGCGCGCTGTCGAGCTACGTGTCGGTACACGCGGAGAGCGGCAAGGTGTACGCGCTGCAGCCGCTGGACCAC  1575

Query 1576  GAGGAGCTAGAGCTGCTGCAGTTTCAGGTGAGCGCGCGCGACGCGGGCGTGCCGCCTCTGGGCAGCAACGTGAC  1649
            |||||||||||||||||||||||.||||||||.||||||||.||||||||||||||||||||||||||||||||
Sbjct 1576  GAGGAGCTAGAGCTGCTGCAGTTCCAGGTGAGTGCGCGCGATGCGGGCGTGCCGCCTCTGGGCAGCAACGTGAC  1649

Query 1650  GCTGCAGGTGTTCGTGCTGGACGAGAACGACAACGCGCCGGCGCTGCTGGCGCCTCGGGTGGGTGGTACTGGTG  1723
            ||||||||||||||||||||||||||||||||||||||||||.||||||..|||||||||||||||.|..||||
Sbjct 1650  GCTGCAGGTGTTCGTGCTGGACGAGAACGACAACGCGCCGGCACTGCTGATGCCTCGGGTGGGTGGCATCGGTG  1723

Query 1724  GTGCAGTGAGCGAGCTGGTGCCGCGGTCACTGGGTGCAGGCCAAGTGGTGGCGAAGGTGCGCGCAGTTGACGCC  1797
            |.|||||||||||||||||||||||||||.|||||||.|||||.|||||.|||||||||||||||||.||.||.
Sbjct 1724  GCGCAGTGAGCGAGCTGGTGCCGCGGTCAGTGGGTGCGGGCCACGTGGTAGCGAAGGTGCGCGCAGTGGATGCA  1797

Query 1798  GACTCAGGCTACAACGCGTGGCTTTCGTATGAGCTGCAGCC----CCCGGCAAGCAGCGCTCGCTTCCCGTTTC  1867
            |||||||||||||||||||||||||||||||||||||||||    .|||    ||.|.||.|||.|||||||||
Sbjct 1798  GACTCAGGCTACAACGCGTGGCTTTCGTATGAGCTGCAGCCTGGGACCG----GCGGTGCGCGCATCCCGTTTC  1867

Query 1868  GCGTGGGGCTGTACACGGGCGAGATCAGCACCACTCGTGTCCTGGACGAAGCGGACTCTCCGCGCCACCGGCTG  1941
            |||||||||||||||||||.|||||||||||.||.||||.|||||||||.|.||||.|.||||||||.||.||.
Sbjct 1868  GCGTGGGGCTGTACACGGGAGAGATCAGCACGACCCGTGCCCTGGACGAGGTGGACGCCCCGCGCCATCGCCTA  1941

Query 1942  CTGGTGCTGGTGAAAGACCACGGTGAGCCGGCGCTGACAGCGACGGCCACGGTTCTGGTGTCGCTGGTGGAGAG  2015
            ||||||||||||||.|||||||||||.||..|..||||.||.||||||||.||.||||||||||||||||||||
Sbjct 1942  CTGGTGCTGGTGAAGGACCACGGTGAACCCTCATTGACCGCCACGGCCACTGTGCTGGTGTCGCTGGTGGAGAG  2015

Query 2016  TGGCCAGGCTCCAAAGGCGTCATCACGGGCGTCGGTGGGCGCCGCGGGCCCAGAGGCGGCGCTGGTGGATGTCA  2089
            |||||||||.||.|||||.||.||.|.||||||.|..||||||.|||||||.||.||.||.|||||||||||||
Sbjct 2016  TGGCCAGGCACCCAAGGCCTCGTCCCAGGCGTCCGCTGGCGCCACGGGCCCGGAAGCTGCACTGGTGGATGTCA  2089

Query 2090  ACGTGTACCTGATCATCGCCATCTGCGCGGTATCCAGCCTGCTGGTCCTCACGCTACTGCTGTACACAGCGCTG  2163
            ||||||||.|||||.||||||||||||||||.|||||.|||.||||.|||||.||.|||||.||.||.||.|||
Sbjct 2090  ACGTGTACTTGATCGTCGCCATCTGCGCGGTGTCCAGTCTGTTGGTGCTCACACTGCTGCTATATACTGCTCTG  2163

Query 2164  CGGTGCTCGGCGCCACCCACCGAGGGCGCGTGCACGGCGGACAAGCCCACGCTGGTGTGCTCCAGCGCAGTGGG  2237
            ||||||||.|||||.||.|||||.||||..||...|.|||.|||||||||||||||||||||||||||.|||||
Sbjct 2164  CGGTGCTCCGCGCCGCCAACCGAAGGCGACTGTGGGCCGGGCAAGCCCACGCTGGTGTGCTCCAGCGCGGTGGG  2237

Query 2238  GAGCTGGTCGTACTCGCAGCAGAGGCGGCAGAGGGTGTGCTCCGGGGAGGGCCCACCCAAGATGGATCTCATGG  2311
            |||||||||.||||||||||||||||.|||||||||||||||.||.|||||....|||||||..||.|||||||
Sbjct 2238  GAGCTGGTCATACTCGCAGCAGAGGCAGCAGAGGGTGTGCTCTGGAGAGGGGTTGCCCAAGACCGACCTCATGG  2311

Query 2312  CCTTTAGCCCCAGCCTTTCACCTTGTCCTATTATGATGGG-TAAGGCGGAGAATCAGGATTTAAATGAAGATCA  2384
            |.||||||||.||||||.|.||||||||.|||| |..||| ||..|.||||||.||||||.|..|.|..|||| 
Sbjct 2312  CTTTTAGCCCTAGCCTTCCTCCTTGTCCAATTA-GCCGGGATAGAGAGGAGAAACAGGATGTGGACGTTGATC-  2383

Query 2385  TGAT----GCCAAACCACGACAGCCCAACCCTGACTGGCGTTACTCTGCCTCCCTGAGAGCAGGCATGCACAGC  2454
               |    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2384  ---TCTCAGCCAAACCACGACAGCCCAACCCTGACTGGCGTTACTCTGCCTCCCTGAGAGCAGGCATGCACAGC  2454

Query 2455  TCTGTGCACCTAGAGGAGGCTGGCATTCTACGGGCTGGTCCAGGAGGGCCTGATCAGCAGTGGCCAACAGTATC  2528
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2455  TCTGTGCACCTAGAGGAGGCTGGCATTCTACGGGCTGGTCCAGGAGGGCCTGATCAGCAGTGGCCAACAGTATC  2528

Query 2529  CAGTGCAACACCAGAACCAGAGGCAGGAGAAGTGTCCCCTCCAGTCGGTGCGGGTGTCAACAGCAACAGCTGGA  2602
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2529  CAGTGCAACACCAGAACCAGAGGCAGGAGAAGTGTCCCCTCCAGTCGGTGCGGGTGTCAACAGCAACAGCTGGA  2602

Query 2603  CCTTTAAATACGGACCAGGCAACCCCAAACAATCCGGTCCCGGTGAGTTGCCCGACAAATTCATTATCCCAGGA  2676
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2603  CCTTTAAATACGGACCAGGCAACCCCAAACAATCCGGTCCCGGTGAGTTGCCCGACAAATTCATTATCCCAGGA  2676

Query 2677  TCTCCTGCAATCATCTCCATCCGGCAGGAGCCTACTAACAGCCAAATTGACAAAAGTGACTTCATAACCTTCGG  2750
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2677  TCTCCTGCAATCATCTCCATCCGGCAGGAGCCTACTAACAGCCAAATTGACAAAAGTGACTTCATAACCTTCGG  2750

Query 2751  CAAAAAGGAGGAGACCAAGAAAAAGAAGAAAAAGAAGAAGGGTAACAAGACCCAGGAGAAAAAAGAGAAAGGGA  2824
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2751  CAAAAAGGAGGAGACCAAGAAAAAGAAGAAAAAGAAGAAGGGTAACAAGACCCAGGAGAAAAAAGAGAAAGGGA  2824

Query 2825  ACAGCACGACTGACAACAGTGACTAG  2850
            |||||||||||||||||||||||.||
Sbjct 2825  ACAGCACGACTGACAACAGTGACCAG  2850

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