Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_10461
Subject:
NM_018907.4
Aligned Length:
2941
Identities:
2414
Gaps:
191

Alignment

Query    1  ATGGTGTTTACCCCGGAGGATAGATTGGGAAAGC-------AAT------GTCTGCTCCTCCCGCTTCTGCTCC  61
            ||||.||||.||             ||||.||||       |||      |||||||.|||...|||||.||||
Sbjct    1  ATGGAGTTTTCC-------------TGGGGAAGCGGCCAGGAATCCCGGCGTCTGCTGCTCTTACTTCTTCTCC  61

Query   62  TCGCAGCCTGGAAGGTGGGGAGCGGCCAGCTCCACTACTCCGTACCCGAGGAGGCCAAACACGGCACCTTCGTG  135
            |||||||||||.|||..||||.|||.||||||||||||||.||..|||||||||||||||||||||||||||||
Sbjct   62  TCGCAGCCTGGGAGGCAGGGAACGGTCAGCTCCACTACTCGGTCTCCGAGGAGGCCAAACACGGCACCTTCGTG  135

Query  136  GGCCGGATCGCGCAGGACCTGGGGCTGGAGCTGGCGGAGCTGGTGCCGCGCCTGTTCAGGATGGCCTCCAAAGA  209
            |||||.|||||||||||||||||.|||||||||||||||||||||||||||||||||.||.||||.|||||.|.
Sbjct  136  GGCCGCATCGCGCAGGACCTGGGACTGGAGCTGGCGGAGCTGGTGCCGCGCCTGTTCCGGGTGGCGTCCAAGGG  209

Query  210  CCGC-GAGGACCTTCTGGAGGTAAATCTGCAGAATGGCATTTTGTTTGTGAATTCTCGGATCGACCGCGAGGAG  282
            |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||
Sbjct  210  CCGCGGAGG-CCTTCTGGAGGTAAATCTGCAGAATGGCATTTTGTTTGTGAATTCTCGGATCGACCGGGAGGAG  282

Query  283  CTGTGCGGGCGGAGCGCGGAGTGCAGCATCCACCTGGAGGTGATCGTGGACAGGCCGCTGCAGGTTTTCCATGT  356
            ||||||.||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||
Sbjct  283  CTGTGCCGGCGGAGCGCGGAGTGCAGCATCCACCTGGAGGTGATCGTAGACAGGCCGCTGCAGGTTTTCCATGT  356

Query  357  GGACGTGGAGGTGAGGGACATTAACGACAACCCGCCCTTGTTCCCGGTAGAGGAAC---AAAGA----GTGCTG  423
            |||||||||||||||||||||||||||.||||||||..|||||||     ||.|||   |||||    ||.|  
Sbjct  357  GGACGTGGAGGTGAGGGACATTAACGATAACCCGCCGGTGTTCCC-----AGCAACACAAAAGAACCTGTCC--  423

Query  424  ATTTACGAATCTAGGCTGCCAGATTCTGTGTTTCCACTGGAGGGCGCGTCCGATGCAGATGTTGGCTCAAATTC  497
            ||....|||||.||||.||..||.|||..|||||||||.||||||||.||.|||||||||.|.||....||..|
Sbjct  424  ATCGCGGAATCCAGGCCGCTTGACTCTCGGTTTCCACTAGAGGGCGCCTCGGATGCAGATATCGGGGAGAACGC  497

Query  498  CATCTTAACCTATAAACTCAGTTCTAGCGAATACTTCGGGCTAGATGTGAAAATAAACAGTGATGACAA-----  566
            |.|..|.||.||.|.|||.||..|.|..||||||||....||.||    ||||..|.|  |||||||.|     
Sbjct  498  CCTGCTCACTTACAGACTGAGCCCAAATGAATACTTTTCTCTGGA----AAAACCACC--TGATGACGAGCTGG  565

Query  567  TAAACAAA----TTGGGCTCTTATTAAAGAAATCCTTGGACAGAGAGGAAGCTCCTGCACACA---ACTTATTC  633
            ||   |||    |||||||..|||||..||||||.||.||||||||.||||||||.|   |.|   ..|||.|.
Sbjct  566  TA---AAAGGTCTTGGGCTTATATTACGGAAATCTTTAGACAGAGAAGAAGCTCCGG---AGATTTTTTTAGTG  633

Query  634  CTGACAGCCACAGATGGGGGCAAACCTGAGCTCACAGGCACTGTTCAGCTGCTGGTCACAGTGCTGGATGTGAA  707
            ||.||||||||.|||||.||||||||.|||.|.||.|||||.||||||.|.||..|||||||.|||||||..||
Sbjct  634  CTCACAGCCACTGATGGAGGCAAACCCGAGTTGACTGGCACCGTTCAGTTACTCATCACAGTACTGGATGCCAA  707

Query  708  TGATAATGCTCCCA-CTTTCGAACAGTCTGAA-----TACGAAGTAAGAATATTCGAAAATGCAGACAACGGAA  775
            |||.||||| |||| ||||.||     |.|||     ||..|.||.|||.||.|.|||||||.....||.||||
Sbjct  708  TGACAATGC-CCCAGCTTTTGA-----CAGAACCATTTATAAGGTGAGATTACTAGAAAATGTTCCTAATGGAA  775

Query  776  CAACAGTTATCAGACTGAATGCTTCTGATCGGGATGAAGGAGCGAATGGGGCAATTTCATATTCTTT------T  843
            ||...||.||.|.|||.||.||.||.|||...||.||||||..||||||||..|||...|||||.||      |
Sbjct  776  CATTGGTAATTAAACTTAACGCCTCAGATTTAGACGAAGGATTGAATGGGGACATTGTTTATTCATTCTCAAAT  849

Query  844  AATAGCCTTGTTGCAGCC--ATGGTTATTGA----CCACTTTAGCATAGATCGAAATACGGGAGAAAT------  905
            .|||      ||.| |||  |||     |||    |.|.|||..||||||||.||.|||.|||.||||      
Sbjct  850  GATA------TTTC-GCCAAATG-----TGAAATCCAAGTTTCACATAGATCCAATTACTGGACAAATTATTGT  911

Query  906  --AGTGATTCGGGGTAATTTGGATTTTGAACAAGAAAACTTATACAAAATCCT----CATT------GACGCCA  967
              ||.|||        ||.|.||.||||   ||||||.|       |||||||    .|||      ||.|.||
Sbjct  912  AAAGGGAT--------ATATTGACTTTG---AAGAAAGC-------AAATCCTATGAAATTATTGTAGAGGGCA  967

Query  968  CGGACAAAGGCCATCCTCCCA-----TGGCGGGTCATTGCACCGTTTTAGTG-----AGAATTTTGGATAAAAA  1031
            ..||.||.||.|| .||||||     ||||    |||||.|..|||.|.|||     ||||     ||.||.||
Sbjct  968  TTGATAAGGGACA-GCTCCCACTTTCTGGC----CATTGTAGAGTTATTGTGGAAGTAGAA-----GACAACAA  1031

Query 1032  TGATAACGTCCCTGAGATAGCACTGACTTCCTTATC-CTTGCCTGTACGTGAAGACGCTCAATTTGGTACTGTC  1104
            .|||||.|||||.||..|.|.|.|.|..||.||||| ||| ||..|..|.||.|||||||.|.|.|||||.|||
Sbjct 1032  CGATAATGTCCCAGATTTGGAATTCAAGTCTTTATCACTT-CCAATTAGAGAGGACGCTCCACTGGGTACAGTC  1104

Query 1105  ATCGCCCTAATTAGCGTGAACGACCTCGATTCA--GGTGCCAACGGGCAGGTGAACTGCTCGCTGACGCCTCAC  1176
            ||||||||.||.||||||..||||...||  ||  ||||.|||.||||.|||.|.||||||..|||||.|.|||
Sbjct 1105  ATCGCCCTGATCAGCGTGTCCGACAAAGA--CATGGGTGTCAATGGGCTGGTCACCTGCTCCTTGACGTCCCAC  1176

Query 1177  GTCCCTTTCAAGCTGGTGTCCACCTTCAAGAATTACTACTCGTTGGTGCTGGACAGTGCCCTGGACCGCGAGAG  1250
            |||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1177  GTCCCCTTCAAGCTGGTGTCCACCTTCAAGAATTACTACTCGTTGGTGCTGGACAGTGCCCTGGACCGCGAGAG  1250

Query 1251  CGTGTCGGCCTATGAGTTGGTGGTGACCGCGCGGGACGGGGGCTCGCCTTCGCTGTGGGCCACAGCCAGCTTGT  1324
            ||||||.|||||||||.||||||||||||||||.|||||||||||||||||||||||||||||.|||||..|.|
Sbjct 1251  CGTGTCAGCCTATGAGCTGGTGGTGACCGCGCGAGACGGGGGCTCGCCTTCGCTGTGGGCCACGGCCAGTGTTT  1324

Query 1325  CTGTGGAGGTGGCCGACATGAATGACAATGCTCCGGCGTTCGCGCAGCCCGAGTACACAGTGTTCGTGAAGGAG  1398
            |||||||||||||.||..||||.|||||.|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1325  CTGTGGAGGTGGCTGATGTGAACGACAACGCTCCGGCGTTCGCGCAGCCCGAGTACACAGTGTTCGTGAAGGAG  1398

Query 1399  AACAACCCGCCGGGCTGCCACATCTTCACGGTGTCTGCGCGAGACGCGGACGCGCAGGAGAACGCGCTGGTGTC  1472
            |||||||||||||||||||||||||||||.|||||||||.|.||||||||||||||||||||||||||||||||
Sbjct 1399  AACAACCCGCCGGGCTGCCACATCTTCACTGTGTCTGCGTGGGACGCGGACGCGCAGGAGAACGCGCTGGTGTC  1472

Query 1473  CTACTCGCTGGTGGAGCGGCGGGTGGGCGAGCGCGCGTTGTCGAGCTACATTTCGGTGCACGCGGAGAGCGGCA  1546
            ||||||||||||.|||||||||||.||.|||||||||.|||||||||||.||||||||||.|||||||||||||
Sbjct 1473  CTACTCGCTGGTAGAGCGGCGGGTAGGGGAGCGCGCGCTGTCGAGCTACGTTTCGGTGCATGCGGAGAGCGGCA  1546

Query 1547  AGGTGTACGCGCTGCAGCCGCTGGACCACGAGGAGCTAGAGCTGCTGCAGTTTCAGGTGAGCGCGCGCGACGCG  1620
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||.|||||.||.
Sbjct 1547  AGGTGTACGCGCTGCAGCCGCTGGACCACGAGGAGCTAGAGCTGCTGCAGTTTCAGGTGACCGCTCGCGATGCC  1620

Query 1621  GGCGTGCCGCCTCTGGGCAGCAACGTGACGCTGCAGGTGTTCGTGCTGGACGAGAACGACAACGCGCCGGCGCT  1694
            ||||||||.||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||.||.||
Sbjct 1621  GGCGTGCCACCTCTGGGCAGCAACGTGACGCTGCAGGTGTTCGTGCTGGACGAAAACGACAACGCGCCAGCACT  1694

Query 1695  GCTGGCGCCTCGGGTGGGTGGTACTGGTGGTGCAGTGAGCGAGCTGGTGCCGCGGTCACTGGGTGCAGGCCAAG  1768
            |||.||||||||||.||||||.||||||||.||||||||||||||||||||..||||..||||||..|||||.|
Sbjct 1695  GCTAGCGCCTCGGGCGGGTGGCACTGGTGGCGCAGTGAGCGAGCTGGTGCCATGGTCGGTGGGTGTGGGCCACG  1768

Query 1769  TGGTGGCGAAGGTGCGCGCAGTTGACGCCGACTCAGGCTACAACGCGTGGCTTTCGTATGAGCTGCAGCCCCCG  1842
            |||||||.|||||||||||.||.||.||.|||||.|||||||||||||||||||||||.|||||||||||...|
Sbjct 1769  TGGTGGCAAAGGTGCGCGCGGTGGATGCTGACTCGGGCTACAACGCGTGGCTTTCGTACGAGCTGCAGCCGGGG  1842

Query 1843  GCAAGCAGCGCTCGCTTCCCGTTTCGCGTGGGGCTGTACACGGGCGAGATCAGCACCACTCGTGTCCTGGACGA  1916
            .|..|..||||.|||.|||||||.|||||||||||||||||.||||||||||||||.||.||||.|||||||||
Sbjct 1843  ACTGGTGGCGCGCGCATCCCGTTCCGCGTGGGGCTGTACACTGGCGAGATCAGCACAACGCGTGCCCTGGACGA  1916

Query 1917  AGCGGACTCTCCGCGCCACCGGCTGCTGGTGCTGGTGAAAGACCACGGTGAGCCGGCGCTGACAGCGACGGCCA  1990
            |.|||||.|||||||||||||.||.|||||.||||||||.||||||||.|||||.||||||||.||.|||||||
Sbjct 1917  AACGGACGCTCCGCGCCACCGCCTACTGGTACTGGTGAAGGACCACGGCGAGCCCGCGCTGACGGCCACGGCCA  1990

Query 1991  CGGTTCTGGTGTCGCTGGTGGAGAGTGGCCAGGCTCCAAAGGCGTCATCACGGGCGTCGGTGGGCGCCGCGGGC  2064
            |.||.||||||||.||.|||||||||||.|||||.||||||||.||.||||||||||.|||||||||.|.|||.
Sbjct 1991  CTGTGCTGGTGTCACTTGTGGAGAGTGGACAGGCGCCAAAGGCCTCCTCACGGGCGTTGGTGGGCGCTGTGGGT  2064

Query 2065  CCAGAGGCGGCGCTGGTGGATGTCAACGTGTACCTGATCATCGCCATCTGCGCGGTATCCAGCCTGCTGGTCCT  2138
            ||.||.||.||||||||||||||||||||.|||||||||||.||||||||||||||.||||||||..||||.||
Sbjct 2065  CCCGATGCTGCGCTGGTGGATGTCAACGTATACCTGATCATTGCCATCTGCGCGGTGTCCAGCCTTTTGGTGCT  2138

Query 2139  CACGCTACTGCTGTACACAGCGCTGCGGTGCTCGGCGCCACCCACCGAGGGCGCGTGCACGGCGGACAAGCCCA  2212
            ||||||.|||||||||||.||||||||||||||.||||..||||||||||||||||||.|..|||.||||||||
Sbjct 2139  CACGCTGCTGCTGTACACCGCGCTGCGGTGCTCTGCGCTGCCCACCGAGGGCGCGTGCGCTCCGGGCAAGCCCA  2212

Query 2213  CGCTGGTGTGCTCCAGCGCAGTGGGGAGCTGGTCGTACTCGCAGCAGAGGCGGCAGAGGGTGTGCTCCGGGGAG  2286
            ||||||||||||||||.||.||||||||||||||.|||||||||||||||.|||.||||||||||||.||.|||
Sbjct 2213  CGCTGGTGTGCTCCAGTGCGGTGGGGAGCTGGTCATACTCGCAGCAGAGGAGGCCGAGGGTGTGCTCTGGTGAG  2286

Query 2287  GGCCCACCCAAGATGGATCTCATGGCCTTTAGCCCCAGCCTTTCACCTTGTC-CTATTATGATGGGTAAGGCGG  2359
            |||||||||||||..||.|||||||||||.||||||||   ||.||| ||.| |||       ||    |.|.|
Sbjct 2287  GGCCCACCCAAGACCGACCTCATGGCCTTCAGCCCCAG---TTTACC-TGACTCTA-------GG----GACAG  2345

Query 2360  AGA--ATCAG-----GATTTAAATGAAG-ATCATGATGCCAAACCACGACAGCCCAACCCTGACTGGCGTTACT  2425
            |||  |||||     ||  .||.|||.| |||.| .|||.||.|||||||||||||||||||||||||||||||
Sbjct 2346  AGAAGATCAGCTGCAGA--CAACTGAGGAATCCT-TTGCAAAGCCACGACAGCCCAACCCTGACTGGCGTTACT  2416

Query 2426  CTGCCTCCCTGAGAGCAGGCATGCACAGCTCTGTGCACCTAGAGGAGGCTGGCATTCTACGGGCTGGTCCAGGA  2499
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2417  CTGCCTCCCTGAGAGCAGGCATGCACAGCTCTGTGCACCTAGAGGAGGCTGGCATTCTACGGGCTGGTCCAGGA  2490

Query 2500  GGGCCTGATCAGCAGTGGCCAACAGTATCCAGTGCAACACCAGAACCAGAGGCAGGAGAAGTGTCCCCTCCAGT  2573
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2491  GGGCCTGATCAGCAGTGGCCAACAGTATCCAGTGCAACACCAGAACCAGAGGCAGGAGAAGTGTCCCCTCCAGT  2564

Query 2574  CGGTGCGGGTGTCAACAGCAACAGCTGGACCTTTAAATACGGACCAGGCAACCCCAAACAATCCGGTCCCGGTG  2647
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2565  CGGTGCGGGTGTCAACAGCAACAGCTGGACCTTTAAATACGGACCAGGCAACCCCAAACAATCCGGTCCCGGTG  2638

Query 2648  AGTTGCCCGACAAATTCATTATCCCAGGATCTCCTGCAATCATCTCCATCCGGCAGGAGCCTACTAACAGCCAA  2721
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2639  AGTTGCCCGACAAATTCATTATCCCAGGATCTCCTGCAATCATCTCCATCCGGCAGGAGCCTACTAACAGCCAA  2712

Query 2722  ATTGACAAAAGTGACTTCATAACCTTCGGCAAAAAGGAGGAGACCAAGAAAAAGAAGAAAAAGAAGAAGGGTAA  2795
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2713  ATTGACAAAAGTGACTTCATAACCTTCGGCAAAAAGGAGGAGACCAAGAAAAAGAAGAAAAAGAAGAAGGGTAA  2786

Query 2796  CAAGACCCAGGAGAAAAAAGAGAAAGGGAACAGCACGACTGACAACAGTGACTAG  2850
            ||||||||||||||||||||||||||||||||||||||||||||||||||||.||
Sbjct 2787  CAAGACCCAGGAGAAAAAAGAGAAAGGGAACAGCACGACTGACAACAGTGACCAG  2841

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