Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_10461
Subject:
NM_018908.3
Aligned Length:
2900
Identities:
2391
Gaps:
142

Alignment

Query    1  ATGGTGTTTACCCCG-GAGGATAGATTGGGAAAGCAATGTCTGCTCCTCCCGCTTCTG----CTCCTCGCAGCC  69
            |||||.|.|.|||.| ||||| ||..||||      ||..|.||||||.|.|| ||||    |||||.||...|
Sbjct    1  ATGGTATATTCCCGGAGAGGA-AGTCTGGG------ATCCCGGCTCCTGCTGC-TCTGGCTTCTCCTTGCCTAC  66

Query   70  TGGAAGGTGGGGAGCGGCCAGCTCCACTACTCCGTACCCGAGGAGGCCAAACACGGCACCTTCGTGGGCCGGAT  143
            |||||||..|||||||||||||||||||||||..|.||.|||||.|||||||||||.||||||||.|||||.||
Sbjct   67  TGGAAGGCAGGGAGCGGCCAGCTCCACTACTCGATCCCGGAGGAAGCCAAACACGGAACCTTCGTTGGCCGCAT  140

Query  144  CGCGCAGGACCTGGGGCTGGAGCTGGCGGAGCTGGTGCCGCGCCTGTTCAGGATGGCCTCCAAAGACCGCGAGG  217
            ||||||||||||.||||||||||||||||||||||||||||||||||||.||.||||.|||||.|.|||||.||
Sbjct  141  CGCGCAGGACCTAGGGCTGGAGCTGGCGGAGCTGGTGCCGCGCCTGTTCCGGGTGGCGTCCAAGGGCCGCGGGG  214

Query  218  ACCTTCTGGAGGTAAATCTGCAGAATGGCATTTTGTTTGTGAATTCTCGGATCGACCGCGAGGAGCTGTGCGGG  291
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||.||
Sbjct  215  ACCTTCTGGAGGTAAATCTGCAGAATGGCATTTTGTTTGTGAATTCTCGGATCGACCGGGAGGAGCTGTGCCGG  288

Query  292  CGGAGCGCGGAGTGCAGCATCCACCTGGAGGTGATCGTGGACAGGCCGCTGCAGGTTTTCCATGTGGACGTGGA  365
            |||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||.
Sbjct  289  CGGAGGGCGGAGTGCAGCATCCACCTGGAGGTGATCGTGGACAGGCCGCTGCAGGTTTTCCATGTGGAGGTGGC  362

Query  366  GGTGAGGGACATTAACGACAACCCGCCCTTGTTC-CCGGTAGAGGAACAAAGAGTGCTGATTTACGAATCTAGG  438
            .||||.||||||.||.|||||.||||||..|||| ||.| |.|.|||||||||.|..|.||||..||.||.||.
Sbjct  363  AGTGAAGGACATCAATGACAATCCGCCCAGGTTCTCCAG-ACAAGAACAAAGATTATTCATTTTAGAGTCAAGA  435

Query  439  CTGCCAGATTCTGTGTTTCCACTGGAGGGCGCGTCCGATGCAGATGTTGGCTCAAATTC-CATCTTAACCTA--  509
            .||||||||||...||||||.||.|||||||||||.|||...|||.||||..|||||.| || .||.|..||  
Sbjct  436  ATGCCAGATTCGCGGTTTCCGCTAGAGGGCGCGTCGGATTTGGATATTGGAGCAAATGCACA-ATTGAGATACA  508

Query  510  ---TAAACTCAGTTCTAGCGAATACTTCGGGCTAGATGTGAAAATAAACAGTGATGACAATAAACAAA-----T  575
               ||||     |.|.|.||||||.||.|...|||||||.||||.|||   |||  |.||.||||.||     |
Sbjct  509  GGTTAAA-----TCCAAACGAATATTTTGACTTAGATGTTAAAACAAA---TGA--AGAAGAAACGAACTTTTT  572

Query  576  TGGGCTCTTATTAAAGAAATCCTTGGACAGAGAGGAAGCTCCTGCACACAACTTATTCCTGACAGCCACAGATG  649
            .|.|||..|.||.|.|||||||||.||.|||||.|||.|.|..|.||||...|||||..|||..||.||.||||
Sbjct  573  AGAGCTGGTTTTGAGGAAATCCTTAGATAGAGAAGAAACACAAGAACACCGTTTATTAGTGATTGCAACTGATG  646

Query  650  GGGGCAAACCTGAGCTCACAGGCACTGTTCAGCTGCTGGTCACAGTGCTGGATGTGAATGATAATGCTCCCACT  723
            |.||.|||||.||.||.|||||.||.||||||.||.||.|||..||..||||||..||||||||.|| ||||  
Sbjct  647  GAGGAAAACCCGAACTAACAGGTACAGTTCAGTTGTTGATCAATGTATTGGATGCTAATGATAACGC-CCCA--  717

Query  724  TTCGAACAGTCTGA-----------ATACGAAGTAAGAATATTCGAAAATGCAGACAA-CGGAACAACAGTTAT  785
               |||   |.|||           |||  |.||.|||.|.||.||||||||| .||| .||.|||..||||||
Sbjct  718  ---GAA---TTTGATAAATCCATTTATA--ATGTCAGATTGTTGGAAAATGCA-CCAAGTGGGACATTAGTTAT  782

Query  786  CAGACTGAATGCTTCTGATCGGGATGAAGG-AGCGAATGGGGCAAT--TTCATATTCTTT--TAATAGCCTTGT  854
            .|.||||||.||.||.|||...|||||.|| |.| |||..||.|||  |..|| ||||||  ||||   |||||
Sbjct  783  TAAACTGAACGCCTCAGATGCAGATGAGGGCATC-AATAAGGAAATAGTGTAT-TTCTTTAGTAAT---CTTGT  851

Query  855  TGCAG-CCATGGTTATTGACC-ACTTTAGCATAGATCGAAATACGGGAGAAAT---AGTGATTCGGGGTAATTT  923
            |...| |.|||  ||..|.|| |.||||..||..||...|||||.||.|||||   |||.| .|||||  |..|
Sbjct  852  TCTTGACGATG--TAAAGTCCAAATTTATAATTAATTCTAATACTGGTGAAATAAAAGTTA-ACGGGG--AACT  920

Query  924  GGATTTTGAACAAGAAAACTTATACAAAATCCTCATTGACGCCACGGA-CAAAGGCCATCCTCCCA-TGGCGGG  995
            |||||.||||.|..|.||||.|||..||||....|||||.||||.||| .||||..|||  ||||| |..|.||
Sbjct  921  GGATTATGAAGACTATAACTCATATGAAATTAATATTGATGCCATGGATAAAAGTACAT--TCCCATTATCAGG  992

Query  996  TCATTGCACCGTTTTAGTGAGAATTTTGGATAAAAATGATAACGTCCCTGAGATAGCACTGA-CTTCCTTATCC  1068
            .||.||.|..||..||||||.|.|..|||||...||||||||...|||.|||||.||..|.| |..||||.|||
Sbjct  993  ACACTGTAAAGTAGTAGTGAAACTCCTGGATGTGAATGATAATACCCCAGAGATGGCCATAACCACCCTTTTCC  1066

Query 1069  TTGCCTGTACGTGAAGACGCTCAATTTGGTACTGTCATCGCCCTAATTAGCGTGAACGACCTCGATTCAGGTGC  1142
             |||||||....||.|||||||.|.|..|.||.|||||.||.||.||.||||||...||||..||.||||||||
Sbjct 1067  -TGCCTGTCAAAGAGGACGCTCCACTCAGCACGGTCATTGCTCTGATCAGCGTGTCTGACCGTGACTCAGGTGC  1139

Query 1143  CAACGGGCAGGTGAACTGCTCGCTGACGCCTCACGTCCCTTTCAAGCTGGTGTCCACCTTCAAGAATTACTACT  1216
            ||||||||||||||.||||||.||.|.|||.|||||.||.||||||||||||||||||||||||||||||||||
Sbjct 1140  CAACGGGCAGGTGACCTGCTCCCTAATGCCCCACGTTCCCTTCAAGCTGGTGTCCACCTTCAAGAATTACTACT  1213

Query 1217  CGTTGGTGCTGGACAGTGCCCTGGACCGCGAGAGCGTGTCGGCCTATGAGTTGGTGGTGACCGCGCGGGACGGG  1290
            ||||||||||||||||.|||||||||||||||||||||||||.|||||||.|||||||||||||||||||||||
Sbjct 1214  CGTTGGTGCTGGACAGCGCCCTGGACCGCGAGAGCGTGTCGGTCTATGAGCTGGTGGTGACCGCGCGGGACGGG  1287

Query 1291  GGCTCGCCTTCGCTGTGGGCCACAGCCAGCTTGTCTGTGGAGGTGGCCGACATGAATGACAATGCTCCGGCGTT  1364
            |||||||||||||||||||||||.||||||.||||||||||.|||||||||.||||.|||||.|||||||||||
Sbjct 1288  GGCTCGCCTTCGCTGTGGGCCACCGCCAGCGTGTCTGTGGAAGTGGCCGACGTGAACGACAACGCTCCGGCGTT  1361

Query 1365  CGCGCAGCCCGAGTACACAGTGTTCGTGAAGGAGAACAACCCGCCGGGCTGCCACATCTTCACGGTGTCTGCGC  1438
            ||||||||||.||||.||.||||||||||||||||||||||||||.||||||||||||||||||||||||||.|
Sbjct 1362  CGCGCAGCCCCAGTATACCGTGTTCGTGAAGGAGAACAACCCGCCAGGCTGCCACATCTTCACGGTGTCTGCAC  1435

Query 1439  GAGACGCGGACGCGCAGGAGAACGCGCTGGTGTCCTACTCGCTGGTGGAGCGGCGGGTGGGCGAGCGCGCGTTG  1512
            |.|||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||.||.||
Sbjct 1436  GGGACGCGGACGCGCAGGAGAACGCCCTGGTGTCCTACTCGCTGGTGGAGCGGCGGGTGGGCGAGCGCCCGCTG  1509

Query 1513  TCGAGCTACATTTCGGTGCACGCGGAGAGCGGCAAGGTGTACGCGCTGCAGCCGCTGGACCACGAGGAGCTAGA  1586
            |||||.|||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||..|.||
Sbjct 1510  TCGAGTTACGTTTCGGTGCACGCGGAGAGCGGCAAGGTGTACGCGCTGCAGCCGCTGGACCACGAGGAAGTGGA  1583

Query 1587  GCTGCTGCAGTTTCAGGTGAGCGCGCGCGACGCGGGCGTGCCGCCTCTGGGCAGCAACGTGACGCTGCAGGTGT  1660
            ||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1584  GCTGCTGCAGTTCCAGGTGAGCGCGCGCGACGCGGGCGTGCCGCCTCTGGGCAGCAACGTGACGCTGCAGGTGT  1657

Query 1661  TCGTGCTGGACGAGAACGACAACGCGCCGGCGCTGCTGGCGCCTCGGGTGGGTGGTACTGGTGGTGCAGTGAGC  1734
            |||||||||||||||||||||||||||||||||||||||.||||||.||||||||.||.||.||.|||||||||
Sbjct 1658  TCGTGCTGGACGAGAACGACAACGCGCCGGCGCTGCTGGTGCCTCGAGTGGGTGGCACCGGCGGCGCAGTGAGC  1731

Query 1735  GAGCTGGTGCCGCGGTCACTGGGTGCAGGCCAAGTGGTGGCGAAGGTGCGCGCAGTTGACGCCGACTCAGGCTA  1808
            ||||||||||||.|||||.|||||||.|||||.|||||||||||||||||||||||.|||.|.||.||.|||||
Sbjct 1732  GAGCTGGTGCCGAGGTCAGTGGGTGCGGGCCACGTGGTGGCGAAGGTGCGCGCAGTGGACCCTGATTCGGGCTA  1805

Query 1809  CAACGCGTGGCTTTCGTATGAGCTGCAGCCCCCGGCAAGCAGCGCTCGCTTCCCGTTTCGCGTGGGGCTGTACA  1882
            ||||||.|||||||||||||||||||||||..||.|..||||.||.|||.|||||||.||||||||||||||||
Sbjct 1806  CAACGCTTGGCTTTCGTATGAGCTGCAGCCAGCGCCTGGCAGTGCGCGCATCCCGTTCCGCGTGGGGCTGTACA  1879

Query 1883  CGGGCGAGATCAGCACCACTCGTGTC-CTGGACGAAGCGGACTCTCCGCGCCACCGGCTGCTGGTGCTGGTGAA  1955
            |.||||||||||||||.||.|| .|| |||||.||..|.||..|.|||||||||||.||.||||||||||||||
Sbjct 1880  CAGGCGAGATCAGCACAACACG-CTCTCTGGATGAGACCGAAGCACCGCGCCACCGCCTTCTGGTGCTGGTGAA  1952

Query 1956  AGACCACGGTGAGCCGGCGCTGACAGCGACGGCCACGGTTCTGGTGTCGCTGGTGGAGAGTGGCCAGGCTCCAA  2029
            .|||||.||.|||||..||||||||||.||.|||||.||.|||||||||||||||||.|||||||||||.||.|
Sbjct 1953  GGACCATGGAGAGCCCCCGCTGACAGCCACAGCCACAGTGCTGGTGTCGCTGGTGGAAAGTGGCCAGGCGCCGA  2026

Query 2030  AGGCGTCATCACGGGCGTCGGTGGGCGCCGCGGGCCCAGAGGCGGCGCTGGTGGATGTCAACGTGTACCTGATC  2103
            ||||.|||||.||||||||||.||||||.|.|||.||.|||||.||.|||||||||||||||||||||||||||
Sbjct 2027  AGGCCTCATCGCGGGCGTCGGCGGGCGCTGTGGGTCCCGAGGCTGCCCTGGTGGATGTCAACGTGTACCTGATC  2100

Query 2104  ATCGCCATCTGCGCGGTATCCAGCCTGCTGGTCCTCACGCTACTGCTGTACACAGCGCTGCGGTGCTCGGCGCC  2177
            |||||||||||.|||||.||||||||||||||.||||||||.|||||||||||.|||||||||||||||||||.
Sbjct 2101  ATCGCCATCTGTGCGGTGTCCAGCCTGCTGGTGCTCACGCTGCTGCTGTACACCGCGCTGCGGTGCTCGGCGCA  2174

Query 2178  ACCCACCGAGGGCGCGTGCACGGCGGACAAGCCCACGCTGGTGTGCTCCAGCGCAGTGGGGAGCTGGTCGTACT  2251
            .||||||||||.||.||||||...||.|||||||||.|||.|||||||||||||.|||||||||||||||||||
Sbjct 2175  GCCCACCGAGGCCGTGTGCACACGGGGCAAGCCCACTCTGTTGTGCTCCAGCGCGGTGGGGAGCTGGTCGTACT  2248

Query 2252  CGCAGCAGAGGCGGCAGAGGGTGTGCTCCGGGGAGGGCCCACCCAAGATGGATCTCATGGCCTTTAGCCCCAGC  2325
            |||||||||||.|.||||||||||||||.|||||.|..||||||||.|..||.|||||||||||.||.||.|||
Sbjct 2249  CGCAGCAGAGGAGACAGAGGGTGTGCTCTGGGGAAGCTCCACCCAAAACAGACCTCATGGCCTTCAGTCCAAGC  2322

Query 2326  CTTTCACCTTGTCCTATTATGATGGGTAAGGCGGAGAATCAGG-------ATTTAAATGAAGATCATGATGCCA  2392
            |||.|                                 |||||       .|.||.|             |.||
Sbjct 2323  CTTCC---------------------------------TCAGGGTCCCACCTCTACA-------------GACA  2350

Query 2393  AACCACGACAGCCCAACCCTGACTGGCGTTACTCTGCCTCCCTGAGAGCAGGCATGCACAGCTCTGTGCACCTA  2466
            |.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2351  ACCCACGACAGCCCAACCCTGACTGGCGTTACTCTGCCTCCCTGAGAGCAGGCATGCACAGCTCTGTGCACCTA  2424

Query 2467  GAGGAGGCTGGCATTCTACGGGCTGGTCCAGGAGGGCCTGATCAGCAGTGGCCAACAGTATCCAGTGCAACACC  2540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2425  GAGGAGGCTGGCATTCTACGGGCTGGTCCAGGAGGGCCTGATCAGCAGTGGCCAACAGTATCCAGTGCAACACC  2498

Query 2541  AGAACCAGAGGCAGGAGAAGTGTCCCCTCCAGTCGGTGCGGGTGTCAACAGCAACAGCTGGACCTTTAAATACG  2614
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2499  AGAACCAGAGGCAGGAGAAGTGTCCCCTCCAGTCGGTGCGGGTGTCAACAGCAACAGCTGGACCTTTAAATACG  2572

Query 2615  GACCAGGCAACCCCAAACAATCCGGTCCCGGTGAGTTGCCCGACAAATTCATTATCCCAGGATCTCCTGCAATC  2688
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2573  GACCAGGCAACCCCAAACAATCCGGTCCCGGTGAGTTGCCCGACAAATTCATTATCCCAGGATCTCCTGCAATC  2646

Query 2689  ATCTCCATCCGGCAGGAGCCTACTAACAGCCAAATTGACAAAAGTGACTTCATAACCTTCGGCAAAAAGGAGGA  2762
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2647  ATCTCCATCCGGCAGGAGCCTACTAACAGCCAAATTGACAAAAGTGACTTCATAACCTTCGGCAAAAAGGAGGA  2720

Query 2763  GACCAAGAAAAAGAAGAAAAAGAAGAAGGGTAACAAGACCCAGGAGAAAAAAGAGAAAGGGAACAGCACGACTG  2836
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2721  GACCAAGAAAAAGAAGAAAAAGAAGAAGGGTAACAAGACCCAGGAGAAAAAAGAGAAAGGGAACAGCACGACTG  2794

Query 2837  ACAACAGTGACTAG  2850
            |||||||||||.||
Sbjct 2795  ACAACAGTGACCAG  2808

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