Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_10461
Subject:
NM_031860.3
Aligned Length:
2900
Identities:
1750
Gaps:
895

Alignment

Query    1  ATGGTGTTTACCCCGGAGGATAGAT---TGGGAAAGCAATGTCTGCTCCTCCCGCTTCTGCTCCTCGCAGCCTG  71
            |||||.|     ||.||.| |||.|   ||||....||.||||||||.|||.|||||||.||||||||||||||
Sbjct    1  ATGGTTT-----CCAGATG-TAGCTGCCTGGGGGTCCAGTGTCTGCTGCTCTCGCTTCTTCTCCTCGCAGCCTG  68

Query   72  GAAGGTGGGGAGCGGCCAGCTCCACTACTCCGTACCCGAGGAGGCCAAACACGGCACCTTCGTGGGCCGGATCG  145
            |.||||||||||||||||||||||||||||.||...|||||||||||.|||||||||||||||||||||.||||
Sbjct   69  GGAGGTGGGGAGCGGCCAGCTCCACTACTCAGTCTACGAGGAGGCCAGACACGGCACCTTCGTGGGCCGCATCG  142

Query  146  CGCAGGACCTGGGGCTGGAGCTGGCGGAGCTGGTGCCGCGCCTGTTCAGGATGGCCTCC-AAAGACCGCGAGGA  218
            ||||||||||||||||||||||||||||||||||||.||||||||||.||.||||.||| ||||| |.||.|||
Sbjct  143  CGCAGGACCTGGGGCTGGAGCTGGCGGAGCTGGTGCAGCGCCTGTTCCGGGTGGCGTCCAAAAGA-CACGGGGA  215

Query  219  CCTTCTGGAGGTAAATCTGCAGAATGGCATTTTGTTTGTGAATTCTCGGATCGACCGCGAGGAGCTGTGCGGGC  292
            |||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||
Sbjct  216  CCTTCTGGAGGTAAATCTGCAGAATGGCATTTTGTTTGTGAATTCTCGGATTGACCGCGAGGAGCTGTGCGGGC  289

Query  293  GGAGCGCGGAGTGCAGCATCCACCTGGAGGTGATCGTGGACAGGCCGCTGCAGGTTTTCCATGTGGACGTGGAG  366
            ||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.
Sbjct  290  GGAGCGTGGAGTGCAGCATCCACCTGGAGGTGATCGTGGACAGGCCGCTGCAGGTTTTCCATGTGGACGTGGAA  363

Query  367  GTGAGGGACATTAACGACAACCCGCCCTTGTTCCCGGTAGAGGAACAAAGAGTGCTGATTTAC--GAATCTAGG  438
            ||||.||||||||||||||||||||||..||||.|.|||...||||||| ||..||.| .|||  |||||.||.
Sbjct  364  GTGAAGGACATTAACGACAACCCGCCCAGGTTCTCCGTAACAGAACAAA-AGCTCTCA-ATACCTGAATCCAGA  435

Query  439  CTGCCAGATTCTGTGTTTCCACTGGAGGGCGCGTCCGATGCAGATGTTGG------CTCAAATTCCATCTTAAC  506
            ||||..||.|||...||||||||.||.|||||.||.|||||.||||||||      |.|  |||.|    |.||
Sbjct  436  CTGCTTGACTCTCGATTTCCACTAGAAGGCGCATCTGATGCGGATGTTGGAGAGAACGC--ATTGC----TTAC  503

Query  507  CTATAAACTCAGTTCTAGCGAATACTTCGGGCTAGATGTGAAAATAAACAGTGATGACAATAAACAAATT----  576
            .||.|||||||||.|.|..||.||.||.|..||.|||   |..|||||||...|.||||| |.|||||||    
Sbjct  504  TTACAAACTCAGTCCAAATGAGTATTTTGTTCTTGAT---ATTATAAACAAAAAAGACAA-AGACAAATTCCCA  573

Query  577  GGGCTCTTATT-----AAAGAAATCCT--TGGACAGAGAGGAAGCTCCTGCA-CACAACTTATTCCTGACAGCC  642
            |.|  |||.||     .|||     ||  ||||..|.||.|||..|||| || |..||.||.||..|||||||.
Sbjct  574  GTG--CTTGTTCTGCGGAAG-----CTGCTGGATCGTGAAGAAAATCCT-CAGCTAAAGTTGTTGTTGACAGCA  639

Query  643  ACAGATGGGGGCAAACCTGAGCTCACAGGCACTGTTCAGCTGCTGGTCACAGTGCTGGATGTGAATGATAATGC  716
            ||.|||||.|||||||||||..|.||.||..|||||...||||||.||...|||.|.||||..||||||||.||
Sbjct  640  ACTGATGGAGGCAAACCTGAATTTACCGGATCTGTTTCTCTGCTGATCCTGGTGTTAGATGCCAATGATAACGC  713

Query  717  TCCCA-CTTTCGAACAG-TCTGAATACGAAG-TAAGA-ATATTCGAAAATGCAGACAACGGAACAACAGTTATC  786
            .||.| ||||  .|||| .|.|..||.|||| ||||| .|||  ||||||..||..|||..||||..|||.||.
Sbjct  714  CCCTATCTTT--GACAGACCGGTTTATGAAGTTAAGATGTAT--GAAAATCAAGTGAACCAAACATTAGTAATA  783

Query  787  AGACTGAATGCTTCTGATCGGGATGAAGGAGCGAATGGGGCAATTTCATATTCTTTTAATAGC-CTT--GTTGC  857
            .|.||.||.|||||||||..||||||||||...||...||.|||....|||||.||   |||| |||  ||..|
Sbjct  784  CGGCTCAACGCTTCTGATTCGGATGAAGGAATAAACAAGGAAATGATGTATTCATT---TAGCTCTTTGGTCCC  854

Query  858  AGCCATGGTTATTGA--CCACTTTAGCATAGATCGAAA-TACGGGAGAAAT-------AGTGATTCGGGGTAAT  921
            |.|||.|.|.|  ||  ..|.|||.|.||| |.||||| .|||||||||||       |.||||.|       |
Sbjct  855  ACCCACGATAA--GAAGGAAATTTTGGATA-AACGAAAGGACGGGAGAAATAAAAGTAAATGATGC-------T  918

Query  922  TTGGATTTTGA--ACAAGAAAACTTATACAAAATCCTCA--TTGACGCCACGGACAAAGGCCATCCTCCCATGG  991
            .|.||.|||||  |||..||.||||||  .||||  |||  |.||.|..||.||.||.||..|.||.||.||||
Sbjct  919  ATTGACTTTGAGGACAGTAACACTTAT--GAAAT--TCATGTAGATGTTACAGATAAGGGAAACCCACCTATGG  988

Query  992  CGGGTCATTGCACCGTTTTAGTGAGAA-TTTTGGATAAAAATGATAACGTC-CCTGA---GATAGCACTGACTT  1060
            ..|||||.|||||.||..||||| ||| |..|||||.|||||||||| .|| |||||   |||.|   |.||||
Sbjct  989  TTGGTCACTGCACGGTCCTAGTG-GAACTACTGGATGAAAATGATAA-TTCACCTGAGGTGATTG---TCACTT  1057

Query 1061  CCTTATCCTTGCCTGTACGTGAAGACGCTCAATTTGGTACTGTCATCGCCCTAATTAGCGTGAACGACCTCGAT  1134
            |..|.||..|.||.||....|||||.||||||.|.||.||.|||||.||||||||.|||||....||||..|||
Sbjct 1058  CTCTGTCTCTCCCAGTGAAAGAAGATGCTCAAGTGGGCACCGTCATTGCCCTAATCAGCGTTTCTGACCATGAT  1131

Query 1135  TCAGGTGCCAACGGGCAGGTGAACTGCTCGCTGACGCCTCACGTCCCTTTCAAGCTGGTGTCCACCTTCAAGAA  1208
            |||||.||||||||.|||||.|.||||||.||||||||||||||.||.|||||||||||||||||||.||||||
Sbjct 1132  TCAGGAGCCAACGGACAGGTCACCTGCTCTCTGACGCCTCACGTTCCGTTCAAGCTGGTGTCCACCTACAAGAA  1205

Query 1209  TTACTACTCGTTGGTGCTGGACAGTGCCCTGGACCGCGAGAGCGTGTCGGCCTATGAGTTGGTGGTGACCGCGC  1282
            |||||||||.||||||||||||||.||.||||||||||||||.|||||||||||||||.|||||||||||||||
Sbjct 1206  TTACTACTCATTGGTGCTGGACAGCGCTCTGGACCGCGAGAGGGTGTCGGCCTATGAGCTGGTGGTGACCGCGC  1279

Query 1283  GGGACGGGGGCTCGCCTTCGCTGTGGGCCACAGCCAGCTTGTCTGTGGAGGTGGCCGACATGAATGACAATGCT  1356
            |||||||||||||||||.|||||||||||||.||||||.||||||||||||||||||||.||||.|||||.||.
Sbjct 1280  GGGACGGGGGCTCGCCTCCGCTGTGGGCCACGGCCAGCGTGTCTGTGGAGGTGGCCGACGTGAACGACAACGCG  1353

Query 1357  CCGGCGTTCGCGCAGCCCGAGTACACAGTGTTCGTGAAGGAGAACAACCCGCCGGGCTGCCACATCTTCACGGT  1430
            ||.||||||||||||.||||||||||.||||||||||||||||||||||||||.||||||||||||||||||||
Sbjct 1354  CCTGCGTTCGCGCAGTCCGAGTACACGGTGTTCGTGAAGGAGAACAACCCGCCAGGCTGCCACATCTTCACGGT  1427

Query 1431  GTCTGCGCGAGACGCGGACGCGCAGGAGAACGCGCTGGTGTCCTACTCGCTGGTGGAGCGGCGGGTGGGCGAGC  1504
            |||||||.|.|||||||||||||||||||||||.||||||||||||||.|||||||||||||||.|||||||||
Sbjct 1428  GTCTGCGTGGGACGCGGACGCGCAGGAGAACGCCCTGGTGTCCTACTCTCTGGTGGAGCGGCGGTTGGGCGAGC  1501

Query 1505  GCGCGTTGTCGAGCTACATTTCGGTGCACGCGGAGAGCGGCAAGGTGTACGCGCTGCAGCCGCTGGACCACGAG  1578
            ||.||.|||||||||||.|.||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1502  GCTCGCTGTCGAGCTACGTGTCGGTGCACGCGGAGAGCGGCAAGGTGTACGCGCTGCAGCCGCTGGACCACGAG  1575

Query 1579  GAGCTAGAGCTGCTGCAGTTTCAGGTGAGCGCGCGCGACGCGGGCGTGCCGCCTCTGGGCAGCAACGTGACGCT  1652
            |||||.||||||||.|||||.|||                                                  
Sbjct 1576  GAGCTGGAGCTGCTACAGTTCCAG--------------------------------------------------  1599

Query 1653  GCAGGTGTTCGTGCTGGACGAGAACGACAACGCGCCGGCGCTGCTGGCGCCTCGGGTGGGTGGTACTGGTGGTG  1726
                                                                                      
Sbjct 1600  --------------------------------------------------------------------------  1599

Query 1727  CAGTGAGCGAGCTGGTGCCGCGGTCACTGGGTGCAGGCCAAGTGGTGGCGAAGGTGCGCGCAGTTGACGCCGAC  1800
                                                                                      
Sbjct 1600  --------------------------------------------------------------------------  1599

Query 1801  TCAGGCTACAACGCGTGGCTTTCGTATGAGCTGCAGCCCCCGGCAAGCAGCGCTCGCTTCCCGTTTCGCGTGGG  1874
                                                                                      
Sbjct 1600  --------------------------------------------------------------------------  1599

Query 1875  GCTGTACACGGGCGAGATCAGCACCACTCGTGTCCTGGACGAAGCGGACTCTCCGCGCCACCGGCTGCTGGTGC  1948
                                                                                      
Sbjct 1600  --------------------------------------------------------------------------  1599

Query 1949  TGGTGAAAGACCACGGTGAGCCGGCGCTGACAGCGACGGCCACGGTTCTGGTGTCGCTGGTGGAGAGTGGCCAG  2022
                                                                                      
Sbjct 1600  --------------------------------------------------------------------------  1599

Query 2023  GCTCCAAAGGCGTCATCACGGGCGTCGGTGGGCGCCGCGGGCCCAGAGGCGGCGCTGGTGGATGTCAACGTGTA  2096
                                                                                      
Sbjct 1600  --------------------------------------------------------------------------  1599

Query 2097  CCTGATCATCGCCATCTGCGCGGTATCCAGCCTGCTGGTCCTCACGCTACTGCTGTACACAGCGCTGCGGTGCT  2170
                                                                                      
Sbjct 1600  --------------------------------------------------------------------------  1599

Query 2171  CGGCGCCACCCACCGAGGGCGCGTGCACGGCGGACAAGCCCACGCTGGTGTGCTCCAGCGCAGTGGGGAGCTGG  2244
                                                                                      
Sbjct 1600  --------------------------------------------------------------------------  1599

Query 2245  TCGTACTCGCAGCAGAGGCGGCAGAGGGTGTGCTCCGGGGAGGGCCCACCCAAGATGGATCTCATGGCCTTTAG  2318
                                                                                      
Sbjct 1600  --------------------------------------------------------------------------  1599

Query 2319  CCCCAGCCTTTCACCTTGTCCTATTATGATGGGTAAGGCGGAGAATCAGGATTTAAATGAAGATCATGATGCCA  2392
                                                                                      
Sbjct 1600  --------------------------------------------------------------------------  1599

Query 2393  AACCACGACAGCCCAACCCTGACTGGCGTTACTCTGCCTCCCTGAGAGCAGGCATGCACAGCTCTGTGCACCTA  2466
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1600  --CCACGACAGCCCAACCCTGACTGGCGTTACTCTGCCTCCCTGAGAGCAGGCATGCACAGCTCTGTGCACCTA  1671

Query 2467  GAGGAGGCTGGCATTCTACGGGCTGGTCCAGGAGGGCCTGATCAGCAGTGGCCAACAGTATCCAGTGCAACACC  2540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1672  GAGGAGGCTGGCATTCTACGGGCTGGTCCAGGAGGGCCTGATCAGCAGTGGCCAACAGTATCCAGTGCAACACC  1745

Query 2541  AGAACCAGAGGCAGGAGAAGTGTCCCCTCCAGTCGGTGCGGGTGTCAACAGCAACAGCTGGACCTTTAAATACG  2614
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1746  AGAACCAGAGGCAGGAGAAGTGTCCCCTCCAGTCGGTGCGGGTGTCAACAGCAACAGCTGGACCTTTAAATACG  1819

Query 2615  GACCAGGCAACCCCAAACAATCCGGTCCCGGTGAGTTGCCCGACAAATTCATTATCCCAGGATCTCCTGCAATC  2688
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1820  GACCAGGCAACCCCAAACAATCCGGTCCCGGTGAGTTGCCCGACAAATTCATTATCCCAGGATCTCCTGCAATC  1893

Query 2689  ATCTCCATCCGGCAGGAGCCTACTAACAGCCAAATTGACAAAAGTGACTTCATAACCTTCGGCAAAAAGGAGGA  2762
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1894  ATCTCCATCCGGCAGGAGCCTACTAACAGCCAAATTGACAAAAGTGACTTCATAACCTTCGGCAAAAAGGAGGA  1967

Query 2763  GACCAAGAAAAAGAAGAAAAAGAAGAAGGGTAACAAGACCCAGGAGAAAAAAGAGAAAGGGAACAGCACGACTG  2836
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1968  GACCAAGAAAAAGAAGAAAAAGAAGAAGGGTAACAAGACCCAGGAGAAAAAAGAGAAAGGGAACAGCACGACTG  2041

Query 2837  ACAACAGTGACTAG  2850
            |||||||||||.||
Sbjct 2042  ACAACAGTGACCAG  2055

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.