Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_10494
Subject:
NR_136511.2
Aligned Length:
3532
Identities:
1253
Gaps:
2076

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ACTTTTGATGGGTTCCGGGTCCCAAAAGGGTTCGAGGCCTCTTGCCTTCGCTCCGTAGGAGGGAGTTCTCTTCT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GGCCCTGGGGGCCGCAGGACTGTCCAGGAATACAGTTTCCAGGTGAGATCTTACTTGAAACACCGGTAGTTCTA  148

Query    1  -----------ATGGCATCTACTTGGGCTATCCAGGCCCACATGGACCAGGATGAACCTTTGGAAGTAAAGATA  63
                       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  GCACAGCTAAAATGGCATCTACTTGGGCTATCCAGGCCCACATGGACCAGGATGAACCTTTGGAAGTAAAGATA  222

Query   64  GAGGAAGAGAAATATACCACCAGACAGGATTGGGACCTGCGTAAAAACAACACCCATAGCAGAGAGGTCTTCCG  137
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  GAGGAAGAGAAATATACCACCAGACAGGATTGGGACCTGCGTAAAAACAACACCCATAGCAGAGAGGTCTTCCG  296

Query  138  TCAGTACTTCAGACAGTTCTGCTACCAGGAGACATCTGGTCCCCGTGAGGCTTTGAGCCGACTCCGAGAACTTT  211
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  TCAGTACTTCAGACAGTTCTGCTACCAGGAGACATCTGGTCCCCGTGAGGCTTTGAGCCGACTCCGAGAACTTT  370

Query  212  GCCATCAGTGGCTGAGGCCAGAGACCCACACCAAAGAACAGATTCTGGAGCTGCTGGTGCTGGAGCAGTTCCTG  285
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  GCCATCAGTGGCTGAGGCCAGAGACCCACACCAAAGAACAGATTCTGGAGCTGCTGGTGCTGGAGCAGTTCCTG  444

Query  286  ACCATCCTACCTGAGGAGCTCCAGGCCTGGGTGCAGGAGCAGCATCCAGAGAGTGGGGAGGAGGTGGTGACTGT  359
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  ACCATCCTACCTGAGGAGCTCCAGGCCTGGGTGCAGGAGCAGCATCCAGAGAGTGGGGAGGAGGTGGTGACTGT  518

Query  360  GCTGGAGGATTTAGAGAGAGAACTGGATGAACCAGGAGAGCAGGTCTCAGTCCACACTGGGGAACAGGAAATGT  433
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  GCTGGAGGATTTAGAGAGAGAACTGGATGAACCAGGAGAGCAGGTCTCAGTCCACACTGGGGAACAGGAAATGT  592

Query  434  TCTTGCAGGAGACGGTACGTCTACGAAAAGAAGGAGAACCCAGTATGTCCCTCCAGTCCATGAAAGCCCAGCCA  507
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  TCTTGCAGGAGACGGTACGTCTACGAAAAGAAGGAGAACCCAGTATGTCCCTCCAGTCCATGAAAGCCCAGCCA  666

Query  508  AAGTATGAATCTCCAGAACTTGAATCCCAACAGGAGCAAGTTTTAGATGTTGAGACTGGAAATGAG-TATGGGA  580
            ||||||||||||||||||||||||||||||||||||||||     ||     |||    |.|..|| ||     
Sbjct  667  AAGTATGAATCTCCAGAACTTGAATCCCAACAGGAGCAAG-----GA-----AGA----AGACCAGCTA-----  721

Query  581  ATTTAAAGCAA-GAAGT--TTCTGAAGAAAT-----GGAACCACA---TGG---GAA---------GA------  625
                    ||| |||.|  ||||||| ||||     .|||||.||   |||   |||         ||      
Sbjct  722  --------CAAGGAAATACTTCTGAA-AAATCACTCTGAACCCCAAGCTGGAGTGAATCTTCTCCTGAGCTCTC  786

Query  626  -CA-TCCAGTAAATTTGAAAATGATATGTCCAAGTCTGCTAGGTGT----GGAGA-AACTC-----GTGAACCT  687
             || |||||          ||||      .||| |||      |||    ||||| |.|||     ||||  ||
Sbjct  787  TCATTCCAG----------AATG------GCAA-TCT------TGTTTCAGGAGAGATCTCTAATAGTGA--CT  835

Query  688  GAAGAAATAACAGAAGAGCCCTCTGCTTGCTCCAGAGAA-------GATAAACAA-------------CCT--A  739
            ||.|  .|||..|||||...||.|||.|....||.||||       |..|||.||             |||  |
Sbjct  836  GATG--GTAAAGGAAGAAGGCTGTGCCTAGAACAAAGAATCAGGCTGGCAAAGAAATCACAGGTCTTTCCTCAA  907

Query  740  CCTGTGATGAAAATGGAGTAAGCCTGACTGAGAACTCTGACCATA-----CTGAACAT--CAGAGAATCTGTCC  806
            .||    |.|||.||        || |||     |||||...|||     |||.||.|  |||||   ||||| 
Sbjct  908  ACT----TTAAATTG--------CT-ACT-----CTCTGGAGATAGCTACCTGGACTTTACAGAG---CTGTC-  959

Query  807  AGGAGAAGAATCTTACGGATGTGATGACTG---TGGAAAAGCTTTTAGTCAG-CACTCACACCTCATAGAACAT  876
               ||||||  ||| .|||.|...||.|.|   |||||||          || ||||...||.|||        
Sbjct  960  ---AGAAGA--CTT-GGGAAGGTTTGCCAGCATTGGAAAA----------AGCCACTTGGACTTCA--------  1009

Query  877  CAGAGGATCCATACTGGAGATAGACCCTACAAATGCGAAGAATGTGGAAAAGCTTT--CCGTGGGAGAACTGTG  948
            |||||        |||                 |..|||||.|..||  |||||||  |.||.|          
Sbjct 1010  CAGAG--------CTG-----------------TCAGAAGACTTAGG--AAGCTTTGCCAGTAG----------  1046

Query  949  CTTATTC--GACACAAAATAATACACACTGGAGAGAAACCGTATAAGTGTAATGAA-----TG-TGGCAAAGCC  1014
                |||  ||.||.|.| ||||||                      |.|.|||||     || |||.|.||.|
Sbjct 1047  ----TTCCTGAGACCAGA-AATACA----------------------TATTATGAAGCAGGTGCTGGAACAGGC  1093

Query 1015  TTTGGCCGGTGGTCAGCTCTTAACCAACATCAGAGACTTCACACA-------------GGAGAA--AAACACTA  1073
            ..|||||                ||.||.|..||..||.||.|.|             .|||||  ||||    
Sbjct 1094  CCTGGCC----------------CCTACTTGTGAAGCTGCAGATATAGATGGTGTTACTGAGAAGGAAAC----  1147

Query 1074  TCACTGTAATGACTGTGGC----AAAGCCTTTAGTCAGAAAGCAGGCCTCTTTCACCATATCAAGATCCACACA  1143
                  |||.|||| ||||    |||         ||.||                ||.|.|||.|||...|.|
Sbjct 1148  ------TAAGGACT-TGGCTCCAAAA---------CAAAA----------------CAAAACAAAATCTGGAGA  1189

Query 1144  AG---------------------------AGA----CAAACCTTATCAGTGCACTCAGTGTAATAAAAGTTTTA  1186
            .|                           |||    |||    .||||.||||.|.||||||.||||||.||||
Sbjct 1190  TGCTGAATTTTGTTGGGGGGAATGTCTGTAGAACTGCAA----CATCAATGCAGTAAGTGTAGTAAAAGCTTTA  1259

Query 1187  GT---CGGCGTTCCATACTTACTCAGCATCAAGGAGTTCATACCGGCGCCAAGCCGTATGA-------------  1244
            ||   .||.|...||   |||||||||||||.|||||.||   ||            ||||             
Sbjct 1260  GTTTATGGTGAGTCA---TTACTCAGCATCATGGAGTCCA---CG------------ATGAAGAGAATCTCTTT  1315

Query 1245  -------GTG----CAACGAG-TGTGGAAAAGCCTTTGTTTATAACTCATCCCTTGTTTCCCATCAGGAAATCC  1306
                   |||    ||||.|| |.|.||||.||.||||||||||....|.||||..||||||...||.|.|.||
Sbjct 1316  TCAATCTGTGCAATCAACAAGTTTTTGAAAGGCTTTTGTTTATAGTGGAACCCTCTTTTCCCCCTAGAAGAACC  1389

Query 1307  ACCACAAAGAAAAATGCTATCAGTGTAAGGAATGTGGGAAATCCTTCAGTCAGAGTGGCCTTATTCAGCATCAG  1380
            |||||||.||||||||||.|||...||||||||||||||||...|||||.||.| ||||||||||...|.|||.
Sbjct 1390  ACCACAAGGAAAAATGCTGTCACCATAAGGAATGTGGGAAAGTTTTCAGCCACA-TGGCCTTATTTGACTTCAA  1462

Query 1381  AGAATTCACACTG-GGGAAAAACCCTACAAATGTGACGTATGTGAAAAAGCCTTTATTCAAAGGACAAGTCTTA  1453
            |||||.|||| || |.||.|.||...|.||||||.|  ||..|||..|.||||||.||||    .|||      
Sbjct 1463  AGAATCCACA-TGAGAGAGAGACTGCATAAATGTAA--TAACTGAGGAGGCCTTTGTTCA----GCAA------  1523

Query 1454  CAGAACATCAGCGAATTCACACTGGAGAAAGACCCTATAAATGTGATAAGTGTGGGAAGGCGTTTACTCA-AAG  1526
             ||||    |.|..||.||.|||          |.||||||      .|.|||.|||||.|.||.||.|| |||
Sbjct 1524  -AGAA----ACCTTATACAAACT----------CGTATAAA------GAATGTAGGAAGACCTTCACCCAGAAG  1576

Query 1527  ATCAGTCCTCACGGAACATCAGAGAATC--CACACTGGAGAGAGGCCCTACAAGTGTGATGAGTGTGGGAATGC  1598
             .|||..||.||.|..||.|||||||||  ||||               |.||...||||||.|||||..||||
Sbjct 1577  -CCAGGACTGACTGTGCACCAGAGAATCTGCACA---------------ATAAACATGATGAATGTGGAGATGC  1634

Query 1599  CTTCCGAGGAATCACCAGCCTCATTCAGCATCAGAGAATCCACACTGGGGAGAAGCCCTACCAATGTGATGAGT  1672
            .|.|                   ||||||||..||||||.||||.|...|.|||.||||.|||.||||||||||
Sbjct 1635  TTGC-------------------TTCAGCATTGGAGAATTCACAGTAAAGGGAAACCCTGCCAGTGTGATGAGT  1689

Query 1673  GTGGAAAAGCCTTCAGACAGAGGAAGAAGACCAGCTACAAGGAAATACTTCTGAAAAATCACTCTGAACCCCAA  1746
            ..|||||||.|||||||....|||                      ||||..|||||||||.|           
Sbjct 1690  ACGGAAAAGTCTTCAGAGGTTGGA----------------------ACTTGGGAAAAATCAGT-----------  1730

Query 1747  GCTGGAGTGAATCTTCTCCT------GAGCTCTCTCATTCCAGAATG----------GCAATCTTGNTTCAG--  1802
                ||||||||    ||.|      ||| .||||.||    .||||          |.||.||||..| ||  
Sbjct 1731  ----GAGTGAAT----TCATATTAGAGAG-GCTCTTAT----AAATGAGAGGATTGTGGAAACTTGTAT-AGAC  1790

Query 1803  -GAG---AGATCTC------------------------------------------------------------  1812
             |||   |||.|||                                                            
Sbjct 1791  AGAGATCAGACCTCAACAAGGGAGCCTCCACAGTATTGAAAAGTTAATATAATTAATGTAAGTGGGCAAGTTGT  1864

Query 1813  --------------------------------------------------------------------------  1812
                                                                                      
Sbjct 1865  ATGGGGAATGGGTAGTCTAAATTGCTCATTTTAGCCAGTAAAAACATTAAATTAGTTTCTTAGATCAAGAAAAG  1938

Query 1813  --------------------------------------------------------------------------  1812
                                                                                      
Sbjct 1939  GAAATGTTAGAAGTTATTTTTCCCTTCCAGAGGGGTCTATATGTGTAAGCAACCAGGACTTTTGAAATAAGTTG  2012

Query 1813  --------------------------------------------------------------------------  1812
                                                                                      
Sbjct 2013  CATCTCTGGATTTGTGATCTGTCTCCTGGATGATTATCTCTGTTTTGGGAGACAGGTATTTTTTCTTCATGCCT  2086

Query 1813  --------------------------------------------------------------------------  1812
                                                                                      
Sbjct 2087  GCTCTAGTCTCATCTCATATCTTTAATTCATTCAGCAAGTATACACAATAGTATTATCGTCTACTGTTTGTTGT  2160

Query 1813  --------------------------------------------------------------------------  1812
                                                                                      
Sbjct 2161  AAATATATATATATTATTTTCTTTTTGGTCTGAGTAGGCTTGTATTGGTACCCTAGGACATAAAAATCACATAT  2234

Query 1813  --------------------------------------------------------------------------  1812
                                                                                      
Sbjct 2235  ATCATGTTTCAGTAAATGCAGTGAAAGGAACTATATTATTAAATTGCTGGGAATTTCTGTAAATTTGAGACTAC  2308

Query 1813  --------------------------------------------------------------------------  1812
                                                                                      
Sbjct 2309  CTTTATATTCTCCAACACAAGACCGTGTAGGTGTCCCTTCAGAGAGTATATTTTTCTAGCTTGGCTTCTTTATT  2382

Query 1813  --------------------------------------------------------------------------  1812
                                                                                      
Sbjct 2383  TTCTTTATTTTTTTGAGATGGAGTCTTGCTCCTGTCGCCCAGGCTGGAGTGCAATGGCACGATCTCGGCTCACT  2456

Query 1813  --------------------------------------------------------------------------  1812
                                                                                      
Sbjct 2457  GCAACCTCCGCCTCCCAGGTTCAAGTGATTCTCCTGTCTCAGTCTCCCGAGTAGCTGGGATTACAGGCACTTGC  2530

Query 1813  --------------------------------------------------------------------------  1812
                                                                                      
Sbjct 2531  CACCATTCCCAGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACT  2604

Query 1813  --------------------------------------------------------------------------  1812
                                                                                      
Sbjct 2605  CCTGACCTTGTGATCTGCCCACCTTGGCCTCCCAAAGTTCAGGGATTACAGGCATGAGCCACCATGCCCGGCTG  2678

Query 1813  --------------------------------------------------------------------------  1812
                                                                                      
Sbjct 2679  TTTTTTTAAGATAGAAAAATATACTTCATGTATAGCCTATTGACAGATAATGACTGATATTTTTTCTTATAGAT  2752

Query 1813  --------------------------------------------------------------------------  1812
                                                                                      
Sbjct 2753  AACACATAATAAACATTGTGAAGACTAATAAGTAACTTGCTTATTCTTTTCAGTTCTAAAACCTGTAGGAAAGA  2826

Query 1813  --------------------------------------------------------------------------  1812
                                                                                      
Sbjct 2827  ATCTTTAGAAGCTGTCAACAAGTTGATAATGTAGCCCAATCTCTACCCATGATAGGAGAGTAAGGCTTATATAT  2900

Query 1813  --------------------------------------------------------------------------  1812
                                                                                      
Sbjct 2901  TTTATAGTAGGGCACTAAATACAGGAACCATGTATTTAAAAACTTTTTAGTGATTATCTCAGAATTCTAGGTGT  2974

Query 1813  --------------------------------------------------------------------------  1812
                                                                                      
Sbjct 2975  CCCTCTGCTGTACATCCCTAAATTTTTTGCATAGGTATTATTAATAAATTCATTATTTTCAAAGATGGACTGTG  3048

Query 1813  --------------------------------------------------------------------------  1812
                                                                                      
Sbjct 3049  TTCTGTAAAAAGCTTTTCCAGTATCTGCAAATCACACAGTTTTTTTTAACTCTATTACTATTATATAAAATGAT  3122

Query 1813  ------------------------------------------------------  1812
                                                                  
Sbjct 3123  TTCTTAATATTGAACCAACCTTGCATTCCTAGAATAAACCTCACTTAGCCATGA  3176

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