Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_10494
Subject:
NR_160526.1
Aligned Length:
3532
Identities:
1245
Gaps:
2085

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ACTTTTGATGGGTTCCGGGTCCCAAAAGGGTTCGAGGCCTCTTGCCTTCGCTCCGTAGGAGGGAGTTCTCTTCT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GGCCCTGGGGGCCGCAGGACTGTCCAGGAATACAGTTTCCAGGTGAGATCTTACTTGAAACACCGGTAGTTCTA  148

Query    1  -----------ATGGCATCTACTTGGGCTATCCAGGCCCACATGGACCAGGATGAACCTTTGGAAGTAAAGATA  63
                       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  GCACAGCTAAAATGGCATCTACTTGGGCTATCCAGGCCCACATGGACCAGGATGAACCTTTGGAAGTAAAGATA  222

Query   64  GAGGAAGAGAAATATACCACCAGACAGGATTGGGACCTGCGTAAAAACAACACCCATAGCAGAGAGGTCTTCCG  137
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  GAGGAAGAGAAATATACCACCAGACAGGATTGGGACCTGCGTAAAAACAACACCCATAGCAGAGAGGTCTTCCG  296

Query  138  TCAGTACTTCAGACAGTTCTGCTACCAGGAGACATCTGGTCCCCGTGAGGCTTTGAGCCGACTCCGAGAACTTT  211
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  TCAGTACTTCAGACAGTTCTGCTACCAGGAGACATCTGGTCCCCGTGAGGCTTTGAGCCGACTCCGAGAACTTT  370

Query  212  GCCATCAGTGGCTGAGGCCAGAGACCCACACCAAAGAACAGATTCTGGAGCTGCTGGTGCTGGAGCAGTTCCTG  285
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  GCCATCAGTGGCTGAGGCCAGAGACCCACACCAAAGAACAGATTCTGGAGCTGCTGGTGCTGGAGCAGTTCCTG  444

Query  286  ACCATCCTACCTGAGGAGCTCCAGGCCTGGGTGCAGGAGCAGCATCCAGAGAGTGGGGAGGAGGTGGTGACTGT  359
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  ACCATCCTACCTGAGGAGCTCCAGGCCTGGGTGCAGGAGCAGCATCCAGAGAGTGGGGAGGAGGTGGTGACTGT  518

Query  360  GCTGGAGGATTTAGAGAGAGAACTGGATGAACCAGGAGAGCAGGTCTCAGTCCACACTGGGGAACAGGAAATGT  433
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  GCTGGAGGATTTAGAGAGAGAACTGGATGAACCAGGAGAGCAGGTCTCAGTCCACACTGGGGAACAGGAAATGT  592

Query  434  TCTTGCAGGAGACGGTACGTCTACGAAAAGAAGGAGAACCCAGTATGTCCCTCCAGTCCATGAAAGCCCAGCCA  507
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  TCTTGCAGGAGACGGTACGTCTACGAAAAGAAGGAGAACCCAGTATGTCCCTCCAGTCCATGAAAGCCCAGCCA  666

Query  508  AAGTATGAATCTCCAGAACTTGAATCCCAACAGGAGCAAGTTTTAGATGTTGAGACTGGAAATGAG-TATGGGA  580
            |||||||||||||||||||||||||||||||||||  |||                     |..|| ||     
Sbjct  667  AAGTATGAATCTCCAGAACTTGAATCCCAACAGGA--AAG---------------------ACCAGCTA-----  712

Query  581  ATTTAAAGCAA-GAAGT--TTCTGAAGAAAT-----GGAACCACA---TGG---GAA---------GA------  625
                    ||| |||.|  ||||||| ||||     .|||||.||   |||   |||         ||      
Sbjct  713  --------CAAGGAAATACTTCTGAA-AAATCACTCTGAACCCCAAGCTGGAGTGAATCTTCTCCTGAGCTCTC  777

Query  626  -CA-TCCAGTAAATTTGAAAATGATATGTCCAAGTCTGCTAGGTGT----GGAGA-AACTC-----GTGAACCT  687
             || |||||          ||||      .||| |||      |||    ||||| |.|||     ||||  ||
Sbjct  778  TCATTCCAG----------AATG------GCAA-TCT------TGTTTCAGGAGAGATCTCTAATAGTGA--CT  826

Query  688  GAAGAAATAACAGAAGAGCCCTCTGCTTGCTCCAGAGAA-------GATAAACAA-------------CCT--A  739
            ||.|  .|||..|||||...||.|||.|....||.||||       |..|||.||             |||  |
Sbjct  827  GATG--GTAAAGGAAGAAGGCTGTGCCTAGAACAAAGAATCAGGCTGGCAAAGAAATCACAGGTCTTTCCTCAA  898

Query  740  CCTGTGATGAAAATGGAGTAAGCCTGACTGAGAACTCTGACCATA-----CTGAACAT--CAGAGAATCTGTCC  806
            .||    |.|||.||        || |||     |||||...|||     |||.||.|  |||||   ||||| 
Sbjct  899  ACT----TTAAATTG--------CT-ACT-----CTCTGGAGATAGCTACCTGGACTTTACAGAG---CTGTC-  950

Query  807  AGGAGAAGAATCTTACGGATGTGATGACTG---TGGAAAAGCTTTTAGTCAG-CACTCACACCTCATAGAACAT  876
               ||||||  ||| .|||.|...||.|.|   |||||||          || ||||...||.|||        
Sbjct  951  ---AGAAGA--CTT-GGGAAGGTTTGCCAGCATTGGAAAA----------AGCCACTTGGACTTCA--------  1000

Query  877  CAGAGGATCCATACTGGAGATAGACCCTACAAATGCGAAGAATGTGGAAAAGCTTT--CCGTGGGAGAACTGTG  948
            |||||        |||                 |..|||||.|..||  |||||||  |.||.|          
Sbjct 1001  CAGAG--------CTG-----------------TCAGAAGACTTAGG--AAGCTTTGCCAGTAG----------  1037

Query  949  CTTATTC--GACACAAAATAATACACACTGGAGAGAAACCGTATAAGTGTAATGAA-----TG-TGGCAAAGCC  1014
                |||  ||.||.|.| ||||||                      |.|.|||||     || |||.|.||.|
Sbjct 1038  ----TTCCTGAGACCAGA-AATACA----------------------TATTATGAAGCAGGTGCTGGAACAGGC  1084

Query 1015  TTTGGCCGGTGGTCAGCTCTTAACCAACATCAGAGACTTCACACA-------------GGAGAA--AAACACTA  1073
            ..|||||                ||.||.|..||..||.||.|.|             .|||||  ||||    
Sbjct 1085  CCTGGCC----------------CCTACTTGTGAAGCTGCAGATATAGATGGTGTTACTGAGAAGGAAAC----  1138

Query 1074  TCACTGTAATGACTGTGGC----AAAGCCTTTAGTCAGAAAGCAGGCCTCTTTCACCATATCAAGATCCACACA  1143
                  |||.|||| ||||    |||         ||.||                ||.|.|||.|||...|.|
Sbjct 1139  ------TAAGGACT-TGGCTCCAAAA---------CAAAA----------------CAAAACAAAATCTGGAGA  1180

Query 1144  AG---------------------------AGA----CAAACCTTATCAGTGCACTCAGTGTAATAAAAGTTTTA  1186
            .|                           |||    |||    .||||.||||.|.||||||.||||||.||||
Sbjct 1181  TGCTGAATTTTGTTGGGGGGAATGTCTGTAGAACTGCAA----CATCAATGCAGTAAGTGTAGTAAAAGCTTTA  1250

Query 1187  GT---CGGCGTTCCATACTTACTCAGCATCAAGGAGTTCATACCGGCGCCAAGCCGTATGA-------------  1244
            ||   .||.|...||   |||||||||||||.|||||.||   ||            ||||             
Sbjct 1251  GTTTATGGTGAGTCA---TTACTCAGCATCATGGAGTCCA---CG------------ATGAAGAGAATCTCTTT  1306

Query 1245  -------GTG----CAACGAG-TGTGGAAAAGCCTTTGTTTATAACTCATCCCTTGTTTCCCATCAGGAAATCC  1306
                   |||    ||||.|| |.|.||||.||.||||||||||....|.||||..||||||...||.|.|.||
Sbjct 1307  TCAATCTGTGCAATCAACAAGTTTTTGAAAGGCTTTTGTTTATAGTGGAACCCTCTTTTCCCCCTAGAAGAACC  1380

Query 1307  ACCACAAAGAAAAATGCTATCAGTGTAAGGAATGTGGGAAATCCTTCAGTCAGAGTGGCCTTATTCAGCATCAG  1380
            |||||||.||||||||||.|||...||||||||||||||||...|||||.||.| ||||||||||...|.|||.
Sbjct 1381  ACCACAAGGAAAAATGCTGTCACCATAAGGAATGTGGGAAAGTTTTCAGCCACA-TGGCCTTATTTGACTTCAA  1453

Query 1381  AGAATTCACACTG-GGGAAAAACCCTACAAATGTGACGTATGTGAAAAAGCCTTTATTCAAAGGACAAGTCTTA  1453
            |||||.|||| || |.||.|.||...|.||||||.|  ||..|||..|.||||||.||||    .|||      
Sbjct 1454  AGAATCCACA-TGAGAGAGAGACTGCATAAATGTAA--TAACTGAGGAGGCCTTTGTTCA----GCAA------  1514

Query 1454  CAGAACATCAGCGAATTCACACTGGAGAAAGACCCTATAAATGTGATAAGTGTGGGAAGGCGTTTACTCA-AAG  1526
             ||||    |.|..||.||.|||          |.||||||      .|.|||.|||||.|.||.||.|| |||
Sbjct 1515  -AGAA----ACCTTATACAAACT----------CGTATAAA------GAATGTAGGAAGACCTTCACCCAGAAG  1567

Query 1527  ATCAGTCCTCACGGAACATCAGAGAATC--CACACTGGAGAGAGGCCCTACAAGTGTGATGAGTGTGGGAATGC  1598
             .|||..||.||.|..||.|||||||||  ||||               |.||...||||||.|||||..||||
Sbjct 1568  -CCAGGACTGACTGTGCACCAGAGAATCTGCACA---------------ATAAACATGATGAATGTGGAGATGC  1625

Query 1599  CTTCCGAGGAATCACCAGCCTCATTCAGCATCAGAGAATCCACACTGGGGAGAAGCCCTACCAATGTGATGAGT  1672
            .|.|                   ||||||||..||||||.||||.|...|.|||.||||.|||.||||||||||
Sbjct 1626  TTGC-------------------TTCAGCATTGGAGAATTCACAGTAAAGGGAAACCCTGCCAGTGTGATGAGT  1680

Query 1673  GTGGAAAAGCCTTCAGACAGAGGAAGAAGACCAGCTACAAGGAAATACTTCTGAAAAATCACTCTGAACCCCAA  1746
            ..|||||||.|||||||....|||                      ||||..|||||||||.|           
Sbjct 1681  ACGGAAAAGTCTTCAGAGGTTGGA----------------------ACTTGGGAAAAATCAGT-----------  1721

Query 1747  GCTGGAGTGAATCTTCTCCT------GAGCTCTCTCATTCCAGAATG----------GCAATCTTGNTTCAG--  1802
                ||||||||    ||.|      ||| .||||.||    .||||          |.||.||||..| ||  
Sbjct 1722  ----GAGTGAAT----TCATATTAGAGAG-GCTCTTAT----AAATGAGAGGATTGTGGAAACTTGTAT-AGAC  1781

Query 1803  -GAG---AGATCTC------------------------------------------------------------  1812
             |||   |||.|||                                                            
Sbjct 1782  AGAGATCAGACCTCAACAAGGGAGCCTCCACAGTATTGAAAAGTTAATATAATTAATGTAAGTGGGCAAGTTGT  1855

Query 1813  --------------------------------------------------------------------------  1812
                                                                                      
Sbjct 1856  ATGGGGAATGGGTAGTCTAAATTGCTCATTTTAGCCAGTAAAAACATTAAATTAGTTTCTTAGATCAAGAAAAG  1929

Query 1813  --------------------------------------------------------------------------  1812
                                                                                      
Sbjct 1930  GAAATGTTAGAAGTTATTTTTCCCTTCCAGAGGGGTCTATATGTGTAAGCAACCAGGACTTTTGAAATAAGTTG  2003

Query 1813  --------------------------------------------------------------------------  1812
                                                                                      
Sbjct 2004  CATCTCTGGATTTGTGATCTGTCTCCTGGATGATTATCTCTGTTTTGGGAGACAGGTATTTTTTCTTCATGCCT  2077

Query 1813  --------------------------------------------------------------------------  1812
                                                                                      
Sbjct 2078  GCTCTAGTCTCATCTCATATCTTTAATTCATTCAGCAAGTATACACAATAGTATTATCGTCTACTGTTTGTTGT  2151

Query 1813  --------------------------------------------------------------------------  1812
                                                                                      
Sbjct 2152  AAATATATATATATTATTTTCTTTTTGGTCTGAGTAGGCTTGTATTGGTACCCTAGGACATAAAAATCACATAT  2225

Query 1813  --------------------------------------------------------------------------  1812
                                                                                      
Sbjct 2226  ATCATGTTTCAGTAAATGCAGTGAAAGGAACTATATTATTAAATTGCTGGGAATTTCTGTAAATTTGAGACTAC  2299

Query 1813  --------------------------------------------------------------------------  1812
                                                                                      
Sbjct 2300  CTTTATATTCTCCAACACAAGACCGTGTAGGTGTCCCTTCAGAGAGTATATTTTTCTAGCTTGGCTTCTTTATT  2373

Query 1813  --------------------------------------------------------------------------  1812
                                                                                      
Sbjct 2374  TTCTTTATTTTTTTGAGATGGAGTCTTGCTCCTGTCGCCCAGGCTGGAGTGCAATGGCACGATCTCGGCTCACT  2447

Query 1813  --------------------------------------------------------------------------  1812
                                                                                      
Sbjct 2448  GCAACCTCCGCCTCCCAGGTTCAAGTGATTCTCCTGTCTCAGTCTCCCGAGTAGCTGGGATTACAGGCACTTGC  2521

Query 1813  --------------------------------------------------------------------------  1812
                                                                                      
Sbjct 2522  CACCATTCCCAGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACT  2595

Query 1813  --------------------------------------------------------------------------  1812
                                                                                      
Sbjct 2596  CCTGACCTTGTGATCTGCCCACCTTGGCCTCCCAAAGTTCAGGGATTACAGGCATGAGCCACCATGCCCGGCTG  2669

Query 1813  --------------------------------------------------------------------------  1812
                                                                                      
Sbjct 2670  TTTTTTTAAGATAGAAAAATATACTTCATGTATAGCCTATTGACAGATAATGACTGATATTTTTTCTTATAGAT  2743

Query 1813  --------------------------------------------------------------------------  1812
                                                                                      
Sbjct 2744  AACACATAATAAACATTGTGAAGACTAATAAGTAACTTGCTTATTCTTTTCAGTTCTAAAACCTGTAGGAAAGA  2817

Query 1813  --------------------------------------------------------------------------  1812
                                                                                      
Sbjct 2818  ATCTTTAGAAGCTGTCAACAAGTTGATAATGTAGCCCAATCTCTACCCATGATAGGAGAGTAAGGCTTATATAT  2891

Query 1813  --------------------------------------------------------------------------  1812
                                                                                      
Sbjct 2892  TTTATAGTAGGGCACTAAATACAGGAACCATGTATTTAAAAACTTTTTAGTGATTATCTCAGAATTCTAGGTGT  2965

Query 1813  --------------------------------------------------------------------------  1812
                                                                                      
Sbjct 2966  CCCTCTGCTGTACATCCCTAAATTTTTTGCATAGGTATTATTAATAAATTCATTATTTTCAAAGATGGACTGTG  3039

Query 1813  --------------------------------------------------------------------------  1812
                                                                                      
Sbjct 3040  TTCTGTAAAAAGCTTTTCCAGTATCTGCAAATCACACAGTTTTTTTTAACTCTATTACTATTATATAAAATGAT  3113

Query 1813  ------------------------------------------------------  1812
                                                                  
Sbjct 3114  TTCTTAATATTGAACCAACCTTGCATTCCTAGAATAAACCTCACTTAGCCATGA  3167

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