Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_10619
- Subject:
- XR_002956446.1
- Aligned Length:
- 4062
- Identities:
- 200
- Gaps:
- 3844
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGAAGGGAGGTGGTCGCCCTCCGTCGTGGTCTGGCGTGTATTCCGAGCCTTGGTGTCTGGCGGTTTCCGAGCGT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TGGTGTCTGGCGGTTTCCGAGCGTTGGTGTCTTGGCGGTTTCCGACCGTTGGTGTCTGGCGGTTTCCGACCGTT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GGTGTCTGGCACGCGCCACCCTCTCTTGCTTTGGTTGCGCCATGCCGATGTACCAGACAAGAAGACAAGAAAAT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GATTTGAGGACAGCTTCAATCGCGGTGTGAAGAAGAAAGCAGCAAAACGACCACTGAAAACAACGCCGGTGGCA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 AAATATCCAAAGAAAGGGTCCCAAGCGGTACATCGTCATAGCCGGAAACAGTCAGAGCCACCAGCCAATGATCT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TTTCAATGCTGCGAAAGCTGCCAAAAGTGACATGCAGCACCGAGAAGTCCGCGTGAAGTGCGTGAAGGCTCTGA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 AAGGGCTGTACGGTAACCGGGACCTGACCGCACGCCTGGAGCTCTTCACTGGCCGCTTCAAGGACTGGATGGTT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 TCCATGATCATGGACAGAGAGTACAGTGTGGCAGTGGAGGCCGTCAGATTACTGATACTTATCCTTAAACTTTT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CTACCCTGAGTGCGAGATAAGAACGATGGGTGGAAGAGAGCAACGCCAGAGCCCAGGTGCCCAGAGGACTTTCT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TCCAGCTTCTGCTGTCCTTCTTTGTGGAGAGCAAGCAAATCGCAGTCTTCTCCAGGCTGACAAGGCGAAGGGCA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 TGGCTTCGAAGTGCAAAAGAGTCATCATGAAACATCATGAATCATGAATCATTAGGCGTCTTCCCTTCGCTCCC 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 CACTTTTTTTTTTTTTTTTTTGAGACTGAGTCTCGCTCTGTTGCCCAGGCTGGAGTACAGTGGTGCGATCTTGG 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 CTCACTGCAACCTCTGCCTCCTGGGTTCAAGCGATTCTCCTGCCGTAGCCTCCTGAGTAGCTGGGATTACAGGT 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 CCCCGCCACCACACCTGGCTAATTTTCTTATTTATTTATTTATTTTTAGTAGAGATGGGGTTTTGCCATGTTGG 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 CCAGGCTGGTCTCGAACTCCTGACCTCAAGTGATCCACCTGCTTTGGCCTCCCAAAGTGCTGGGATTACAGGCG 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 TAAGCCATTGCACCCAACTCACTCCCCACCTTAAAACCAAAAGCGCTCTGGCTCTCAATGGAGACATCAAGCCC 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 TCCCTGCCCCTTCTCCCTCCCCTTTCAGAGAATCTCCAGGAATTTCTGCCATTGTGCAGGGAGCAATTGAAAAA 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TCAGTTAGTTCAGCTGGGTGCAGTGGCTCATGTCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCAGATCA 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 CCTGAGGCCAGGAGTTGGAGACCAGCCTGGCCAGCACAGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTA 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 GCCGGGCGTGGTGATGGGCACCTGTAATCCCAGCTACTCTGGAGGCTGAGGCAGGAGAATGGCGTGAACCTGGG 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 AGGTGGAGCTTGCAGTGAGCCGAGACTGCAGCATTGCACTCCAGCCTGCGCAACAAGAGTGAAACTGTCTCAAA 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 AAACAAAACAAAACAAAACACAAAAAGAAAGAAAAAAGGAAAAATCAGTTAGTTCGATTATTAGAAGACTAGAT 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 TATTGCTCAGCAGTAACCACTCCTTTCCCACAAACTCCCCTCTCTAGGAGGAATGTACCTCCCCACCCATTCCT 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 GTTAGGCTTGGCCAGGTGAATCGCTTTGGCCAATAGAATGTAACTGACAAGGTGAGCAGAGATTTGCAGTGGGC 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 TTGTGCTTGGTGCTGGTCCTCCGGGGCTCCTGCCTTTAGCCAGGGGAAGCACACTCCCCAGCCCCTCCTTAGCC 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 CTCTGGCCCTGGGGAGAATGAGAGGCATGTGGCACAGTCCTGGACCCAGCCGTGGCTGGGAGCAAGCCTGGAAG 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 CTTGAGCGAGAGATAAATGCTTGGTCTTTTTGTTTGAGACTAAGTCTCGCTCTATCGCCCAGGCTGGAGTGCAG 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 TGTGGCACAATCTCAGCTCATTGCAACCTCCACCTCCCAGGTTCAAGCTATTCTCCTGCTTCAGCCTCCCAAGT 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 AGCTGGGACTACAGCCAAATTGGAAGACCCACTTCTCTGGACTGGATGCTGCATTGAATTGAGCAAAGGAACTG 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 AGTGCCCGGGGAGCTCAAAGGGAAGCAGCCCAGCCTTCCTTCCGGGGCAGAGCAGTGGTGGGGACCTGTTTCCA 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 GCTGCTTGTGCCCCCCACTTCATGGAGGAGGGACCAGGGATCCTCAGAGGAGAGGGTGATGTTTGACAGTGGCT 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 GCCTGCCCTGAAAATCGCCCTTGTCTGTCCAGCCTGGCCTGAATTTCACCCACATCAACCCACATGGGATACTT 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 TATTTATTTATTTATCTATTTATTTATTTATTTATTTATTTTAGAGCCAGGGTCTCACCCTGTGGCCCAGGCTG 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 GAGTGCCGTGGTGCTATCATAGCTCACTGCAGCCTCAAACTCCTGGGCTCAAGTGATCCTCCCGCCTCAGCCTC 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 CAGAGTAGCTGGGACTACAGGAACACACCACTGTGCCTGGCTTATTTTTCTTTTTTTTTTTGGTAGAGATGGGG 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 GTCTCTCTATGTTGCCCAGGCTGGTCTCAAACTCCTGGCCTCAAGTGATCCTCCTGCCTCGGCCTCCCAAAGTA 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 CTGGGATTACAGAATCGGCTCCCAGACACCTGCCACTCGTGAATGCATCTGATAAACTCACTCACACTGAGGCC 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 TTGGGGACTGAGAGTGCGATGACATGGATCCTGCGGACAAACCGCCCCAGGGCGTACCTAGCACCGAAGCATCA 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 GGCGCCACTAGGTCTCCAGCTCCTTCTCGGATGACGTCCTTCAGCACGCCCCGGTCCCCCGAGATGTCCAGCAT 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 CCTCTGACTTAACCGCTCGTACAGGGACTGATGGAGAATGAAAGCCAGGCCTCAGAGCCGCAGACCCACCCGGC 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 CACCCCTCAGCGTCTACGCCCCCACGTCTGGGCCCTCACCTGGCCGGGGGCGTCGTCCCCTTCCAGGACTCCCT 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 GGTTTAACGCGCTTCCCCCCATGTCCTAGCTGCCCTCCCTGTGGCGTGAGCCTTCGGCCTGGTGCGCCCCGCTG 3108
Query 1 -------------------------------------------ATGCCCGGCAGACCCCTACCGACGGCGGCAT 31
|||||||||||||||||||||||||||||||
Sbjct 3109 CCCTTCCTGGCTGTGACTCTGGTGGGGTTCCGAAGGCCCCTTTATGCCCGGCAGACCCCTACCGACGGCGGCAT 3182
Query 32 TCCATTCTGGGGCCACGAGGAGGCACTCATCGTTTCGTTCCAACCGCCGCCAACGGCCCTGGCCCTCGCGAGCT 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3183 TCCATTCTGGGGCCACGAGGAGGCACTCATCGTTTCGTTCCAACCGCCGCCAACGGCCCTGGCCCTCGCGAGCT 3256
Query 106 CTGGAACTACAGAGGTCGCACG---------GTGAGTTGCCAGG-TG-----------TGGCCCGTAATCGGAG 158
|||||||||||||||||||||| .|||| .||||| || ||| |||..||
Sbjct 3257 CTGGAACTACAGAGGTCGCACGAGGCTCGCTCTGAG--CCCAGGCTGGAGTTCAGTGATGG------ATCTCAG 3322
Query 159 C-----------------------GCACAAAACAT------------------------GATGGG-----ACAC 180
| ||.|||.|.|| |.|||| |.||
Sbjct 3323 CTCACTGCAGCCGCCACCTCCTGGGCTCAAGAGATCCTCCTGCCTCGGCCTCCCAAGTAGCTGGGATTACAGAC 3396
Query 181 GTAACGGGACCACACAGGGCACATTGGGC---------------------ACTTGCAGG--------------- 218
|| |.||||| || |||.|| || |.||||.||
Sbjct 3397 GT----GCACCAC-CA-GGCCCA----GCTAATTTATTTTTTAGTTTTTAATTTGCTGGTAAGATGGTTTGTAG 3460
Query 219 ------GGCGCGAGG---------------TGGCGGCACG---------------------------------- 237
.|| |.||| ||||..||.|
Sbjct 3461 CTTTGTTGC-CTAGGCTGGTCTTGAACTCCTGGCTTCAAGCGATCCTCCAGTCTTGACCTCCCAAAGTGCTGGG 3533
Query 238 -------------------------------------------------------------------------- 237
Sbjct 3534 ATTATAGGCGTAGGCTACAGCCAACTTTCAATACTGCCCCATTGGGGGTTACGTTTCCAACACATGAAATTAGG 3607
Query 238 -------------------------------------------------------------------------- 237
Sbjct 3608 AGGATACATTCAAACCACAGCAGTATATTATGACCATAATATTCATTAACTGTGTAACAGGCTGGGCGCGGTGG 3681
Query 238 -------------------------------------------------------------------------- 237
Sbjct 3682 CTCACACCTGTAATCCCAGCACTTTGGGAGACCAGAGTGGGTAGATCACTCGAGGTCAGGAGTTTGAGACCAGC 3755
Query 238 -------------------------------------------------------------------------- 237
Sbjct 3756 CTGGCCCACATGATGAAACCGCCTCTCTACTAAAAATACAAAAAATTAGCCGGTGTGGTGGCAGGCGCCTGTAA 3829
Query 238 -------------------------------------------------------------------------- 237
Sbjct 3830 CCTCAGCTACTTGGGAGGCTGAGGCAGGAGAATCACTTGAATCCGGGAGGTGGAGGTGGCAGTGAGCCTGATTG 3903
Query 238 -------------------------------------------------------------------------- 237
Sbjct 3904 CACCACTGCACTCCAGCCTGGGCAACAAGAGCAAAACTCTGTCTCAATAAACAAACAAACAAACAAAACCTGTA 3977
Query 238 ------------------------------------------------------------------ 237
Sbjct 3978 TAACAGAGTGTCATTGAATTTCTAAACGTTGAAAGACTTCACATTAAAAAAAAACTCACAATTTAA 4043