Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_10735
Subject:
XR_382743.3
Aligned Length:
5253
Identities:
533
Gaps:
4643

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  TGAGAGCCCGTGTTGTTGCATCCCCCAGTTCCCCGGTCTGTCATGGCAGCGCCCAGGCCTCCAGCCGGTGTGTG  74

Query    1  --------ATGCTGGGGTTTTTGTCCGCACGCCAAACGGGTTTGGAGGACCCTCTTCGCCTTCGGAGAGCAGAG  66
                    |||.||.|.|||||||||||.||.||..|||||||||||||||||||||||.|.||.|||||..||
Sbjct   75  GACCCGAGATGTTGAGCTTTTTGTCCGCTCGACAGTCGGGTTTGGAGGACCCTCTTCGCTTGCGTAGAGCGCAG  148

Query   67  TCAACACGGAGAGTTTTGGGACTGGAATTAAATAAAGACAGAGATGTTGAAAGAATCCACGGCGGTGGAATTAA  140
            ||.||||||||.||..||||.|||||.|||||.||||||||.|||||.|||||||||||.|||.||||..||||
Sbjct  149  TCCACACGGAGGGTCCTGGGGCTGGAGTTAAACAAAGACAGGGATGTGGAAAGAATCCATGGCAGTGGGGTTAA  222

Query  141  CACCCTTGACATTGAACCTGTTGAAGGGAGATACATGTTATCAGGTGGTTCAGATGGTGTGATTGTACTTTATG  214
            ||||||.||||||||.||.||||||||.|||||||||||.||||||||.||.|||||.|||.|||||||.||||
Sbjct  223  CACCCTCGACATTGAGCCCGTTGAAGGAAGATACATGTTGTCAGGTGGCTCCGATGGCGTGGTTGTACTCTATG  296

Query  215  ACCTTGAGAACTCCAGCAGACAATCTTATTACACATGTAAAGCAGTGTGTTCCATTGGCAGAGATCATCCTGAT  288
            |||||||||||.||||||||||..|..||||||||||||||||||||||||||.||||||||...|||||.|||
Sbjct  297  ACCTTGAGAACGCCAGCAGACAGCCCCATTACACATGTAAAGCAGTGTGTTCCGTTGGCAGAAGCCATCCCGAT  370

Query  289  GTTCACAGATACAGTGTGGAGACTGTACAGTGGTATCCTCATGACACTGGCATGTTCACATCAAGCTCATTTGA  362
            |||||||.||||||.|||||||||||.|||||||||||||||||||||||||||||||||||.|||||||||||
Sbjct  371  GTTCACAAATACAGCGTGGAGACTGTTCAGTGGTATCCTCATGACACTGGCATGTTCACATCCAGCTCATTTGA  444

Query  363  TAAAACTCTGAAAGTATGGGATACAAATACATTACAAACTGCAGATGTATTTAATTTTGAGGAAACAGTTTACA  436
            |||||||||||||||.|||||||||||.|||||.||..||||||||||.|||||||||||||||||||||||||
Sbjct  445  TAAAACTCTGAAAGTGTGGGATACAAACACATTGCAGGCTGCAGATGTGTTTAATTTTGAGGAAACAGTTTACA  518

Query  437  GTCATCATATGTCTCCAGTCTCCACCAAGCACTGTTTGGTAGCAGTTGGTACTAGAGGACCCAAAGTACAACTT  510
            |||||||.|||||.||||...||||||||||||||.|||||||||||||.||.|||||||||||.|||||||||
Sbjct  519  GTCATCACATGTCCCCAGCAGCCACCAAGCACTGTCTGGTAGCAGTTGGAACAAGAGGACCCAAGGTACAACTT  592

Query  511  TGTGACTTGAAGTCTGGATCCTGTTCTCACATTCTACAGGGT------------ATTTT--TATTT--------  562
            ||||||||.|||||||||||||||||||||||||||||||||            ||.||  .|.||        
Sbjct  593  TGTGACTTAAAGTCTGGATCCTGTTCTCACATTCTACAGGGTCACAGACAGGAAATCTTGGCAGTTTCCTGGTC  666

Query  563  -------------TATTTC----AAACGGCAACTACT-----TTGAGTAAACGATTCAA-------TAAAAAGA  607
                         |||.||    .|||.||||.|.||     |.|||||||  |||  |       |.|.||| 
Sbjct  667  ACCACGCCATGACTATATCTTGGCAACAGCAAGTGCTGACAGTAGAGTAAA--ATT--ATGGGATGTGAGAAG-  735

Query  608  AACG-------------TTAC-----------------------------------------------------  615
            |.||             ||||                                                     
Sbjct  736  AGCGTCAGGATGCTTGCTTACTCTTGACCAGCATAATGGGAAAAAGTCACAAGCTGCTGAATCAGCAAACACTG  809

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct  810  CTCACAATGGGAAAGTTAACGGCTTATGTTTTACAAGTGACGGCCTTCACCTGCTCACCATTGGCACAGACAAC  883

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct  884  CGAATGCGCCTCTGGAATAGCTCCAGCGGGGACAACACCCTGGTGAACTATGGGAAGCACCATCGCTGTGTACG  957

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct  958  CAGTCCACTCGGGAGAGCGGCTCGCCATGCTCAAGGGACATTACAAAAGCGTCGACTGCTGTGTGTTCCAGCCT  1031

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 1032  AATTTCCAGGAACTTTACAGTGGAAGCAGGGACTGCAATATTCTTGCTTGGGTACCACCTTCCTATGAGCCAGT  1105

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 1106  TCCTGATGATGACGATGAAGCTCCAGCCAAATCCCAGTTAAACCCAGCATTCGCGGACGCCTGGAGCAGCAGTG  1179

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 1180  ACGAGGATGGGTGACTGTCAGCCCTGGCTCCTTGTCCATCAGACTTCCACGACAGTGTTGTGTGCACTTCAGCA  1253

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 1254  CGAGCAGGGTTGTTCTTCCCGTTATTGTTGGTTTTGAGACAGTGTCTCACGATGTAACCCTGGCTAGCCTGGAC  1327

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 1328  TAGCCTGGAACTCTGTATAGAGCAGACTCGGCTCACACTGGCAGCTATTCTGCCTCTGCTCCCAGGTGCTGGGG  1401

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 1402  TTAGAGGTGTATACCACGTGGCCCCTCCTGTACATGTGTGTGATTGTTTGTTTCATTGTTTGTAAACTCTTCAG  1475

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 1476  TCAGTTTTTAACCTGTTAATCCTGAGTTTGGGATATTTCCCTGTGTGCTTTAAAATGAGATCGATGTGTATGAT  1549

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 1550  ACCCTGAAATATACTTTTCTGTCGGTTAATTAATCAGAACTTGTCTCCTTGAGCGCATTCACCAGGGTGGTGGG  1623

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 1624  CCAGCCCCTACGGGCACAGCCCAAGAACAGACTTGTTATTCCCAGCTGGGACCTTCATATGTGCATCCAAGGAG  1697

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 1698  CTGAAAGTATGACCCAGGAAGCTCTCAGCTCTGACTCCTGACTGTGCTGCCAGCCTGCCCTTCCCACCTTCAGG  1771

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 1772  GAGGAGTTTAGCAAGGAGGATTAGAGAAACTTGTTGCAACAGTGGCATCATAATGCTAGATTTTTTACTCAAAC  1845

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 1846  TGAATGGCTTCATGTAATCGAGCCTCTTCTCCCTCATATTGAATGTTAGCCACTCATGCATCTTGCAGTGTGAA  1919

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 1920  CATCGTATCACATAGGCAATCCCTGACCACTTTGTATTGCTCTCAGAGGGCAGCTTACACTCAGTCTTAATTCC  1993

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 1994  TTCCTGTGAAACTCAGCAAAATCCATGCAGGGATGTAGATTAAACATGAAATGCCATACAATTGTTCTTTCCTT  2067

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 2068  TCCTTGTGTCAACTCAGGAGTGATTGTTATGAAGTCTCCTCCATTCTTTGTGTGTGTGTGTGTGTGTGTTAATT  2141

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 2142  TAAGTTCTGTTGCTGTGATAAAATACCCTGAACAAAGACAATTTAGGAGAGAAAGTGTTTATTTCAGTTAACCT  2215

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 2216  AGAATTGTTAACAAACACTTTCACTGTGACTCACTGTGGAAAAGTCAAGACAGAAGCCTCACAAAGCTAGGCAC  2289

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 2290  ATGGCCTTGCAGTCAGAGAAGTGAGTGCGCAGAGCCTTCGCTGCCCAGCTAAAGTGAAGTGACCTCACGGAGAG  2363

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 2364  AAATGGCTTCTCTAACTGAAACTCTATTCATGAAATCTGTGCCGAAAAGTTCCATCTAGAACAGACAAGGAAAA  2437

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 2438  GATAGAAAATAAAACTTTAGAGAAATTCTGAAGACAGGCCCTGAGTTATACCAACTGTAAGATGCAAATGACTT  2511

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 2512  CAGGCTGGTGTGAACACGGTGACTGACGAGGGAGGTGGGAACAGGGAGGTGGGAACAGGGAGGGTTGTGTGTTT  2585

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 2586  GCGGCAAACCTGGGAAGCAGGAAATAGTAGTCATGTTTTTCATGTCTGGAATCAAATGCCTAACAAAGGAGGAA  2659

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 2660  GCATCGATTCTAGCAAATGGTTTGAATGTACAGGACACCGAGGTGGAAAGAAACAGATGGTAGGAACAGCGACA  2733

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 2734  GAAGCAGGAGGCAGACAAGAAGGCACAGACAGGACAGGAAGCAGCGGGGCCAGGCATGAATGTCAAGAGTGCAG  2807

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 2808  TCTCAGAAAAACAGCACTGCCAGCTAGGATCTGAATACCATGGGGACATTTTACATTCATCCACCACTGGTCTC  2881

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 2882  TATAGGTTCATGGCCATCTCATAATGCAAAATGCATTTGGTTCAACTTCAAAAGTCCCCGTACTCCTTCAAATC  2955

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 2956  CAACCCTTGAAAGCGCTAATATTCCCTTGTTCCTGTAGAATAGACGAGTAACCATTCCCATTCCACCACAGCGG  3029

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 3030  AAAGACTGGACCAAAGCAAGATGCAGACCCAGCAGAGGGAAGGAAGCTCAAGTTCCATGTCCGCACCTGGGCCT  3103

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 3104  ATTATGGCATCTTGACTTCAACAGGCTCAGCTCCATTCTTTAGATCTGTTGCCAGCAGCATGCCTGGCCTTTCT  3177

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 3178  TAGACCAGTTCCACCCAGTGCCTGGACCTTTCTTCCCTCAGATATGCCACACTTCTGATACCTGCAGTATCCTG  3251

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 3252  GGGTCTCCACTGTGACTTGAACTTCCCCTTTACAGTTCATGCACGGCCCACTCAGGAGCTCCATGCAGGGAGCC  3325

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 3326  TGGCCTCCCTTCCGTGGCTCTTCTGGAATCTCGGTGCACGCTTCCATGATACTTGGAGTTTGCAGGGCTGGAAA  3399

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 3400  ACTAACACTACATAGAAAACACCAAGTGCTGCTGTCCTTCCCAGATGTAGCCTGGCACTCTTCAGCCATGGCTG  3473

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 3474  CAGCAGCTTCCATGTGATCTAGGATGGGCTCTCGCTTTTGAGTAGGGAACCCTGCGGAGGCTCTCTGACTTCGG  3547

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 3548  ACACCTCTGCTCTCTCTCTGAGTTCTCATGTTTATATCCTGGGACTTAGAGCCGGACTGTCTGTCGGGCTGTCG  3621

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 3622  GGTGCAGAGCTAGGTTTCTTTCTCTTTCCTATCATTCACCTTACTACTAGCTGCTGTCCCCACACACACACACA  3695

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 3696  CACACACACACACACTGCAAGTTTAAACTCATTCAGCTTATTTCTTGCCTAGCTGTAGATTTATCATCTTTCTA  3769

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 3770  CTTTCTTCCTGTAAGTCTGGGCAGTGAGCAGTGACCATCCTCCAGCCTGTGTGCTCTGCTGGCCTGAAGCTTCC  3843

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 3844  TCCACAAAGCAGTTTATCCTAAATTCAACGTCACTCGGATTATCAGGACATGGCTGATTATAACACGAGTAGCC  3917

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 3918  TCTAGTTCAGTTCCAGTTTGGGTCCTCCTTCCTCTTGGACTCGAAAGCATCTCTCTTGGTGGTGTGATTTTCTG  3991

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 3992  AGCTCCAGCTAAAATGGCTCAGTAAGTCTACTTACAGCATTCAGGATGTTCTTTAAGCCACAACTCTAACTTAA  4065

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 4066  TCTTTCTCCTGCAAATTAGTCCCAAAGTTTGCAGGACACATAATCACATTTATCTTAGCAACAACCCTACTCCA  4139

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 4140  TAGCACAAACCTTGCTCTCAGTGCCAGTTTTATTTTTTTAACATTTGTTTTTATTATTTTTATGATATGTATCG  4213

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 4214  TATGGACATGTGTCGGTGAGTGCAGAGACCCGTGGAGCTCAGCAGTGTCTGATCCCCTCGGAACTGTAGTTACA  4287

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 4288  GGTAGTTCTGGATGCTAAGAACCAAACTTGGGGTCTCTAGAAATACAGTACTGAGACATTTCTCCAGCGCCATG  4361

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 4362  TTTTCTGTGTTAGTCTTCACACAGTGACCAAATAGCTGGCAAGAAAAAAAATAAAAATCAAAGCAAAAGGAGGA  4435

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 4436  AGGATTGATTGACTTAGTTTATTAAAGCAACGAACTTAGTTCCGTCAAACCTTGCCAGAAATGGAATGGCAGAA  4509

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 4510  GCCTGGCACACAGGGAATTTTGCCTTTCAGAGAATATACCAGGGAAAGCTAACTACAGAAAGAACAACCACCTT  4583

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 4584  GCCTGTCACTGTGTTTAGATAGGCTGGTTACAGCAGGGCTGGGTTAGAGAGGGACTCAGTACTGGGGAGAATTA  4657

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 4658  GATTGCTGCCCTATAGTTAACAGTTCAGTTGTGAATGTGGCTTTTCTTTTTGTGTGCAGGGGTTTGGTTTTGGT  4731

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 4732  GTTTTGTTTGTTTTTGAGACAGGCTGACCTTGAGCTTGCTGTGTATGTAGCCCAGTGTCTTAGTGAGTGTTCTA  4805

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 4806  TTACTGTGAAGCCACACCAAAACCACAGTGACTCTTACAAGGGAAGGCATTTAATTGGGGGCTCAGTCCATTTT  4879

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 4880  CATGAAGGTGAAGATCGGGATGGCACGCAGGGAGACATGGCACTGGAGAGGTAGCTAAGAGTTGTACGTCTGAG  4953

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 4954  TCTGCAGACAGCAGGAAGAGAGCCTCTAGACTTGGAATGGGCTTTGGAACCTCAGGGTCTACACCTAATGACAC  5027

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 5028  ACTTCCTCCAACAAGGCCACACCTCTTTGTCCTTTCATATAGTGCCCCTCTCTGGTGCCCAGTATACAACTCTG  5101

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 5102  TGAGCCTATGGAGGCCGTTCTCATTCAAACCACCACACTCAGTCTGGATTCCAGCTCCGGATCCTGCAGCCTTA  5175

Query  616  -------------------------------------------------------------------------  615
                                                                                     
Sbjct 5176  GCTTCCCCGGTGCTGGGATGGCAGACATGGGCCTCCACAATGCCTAGTCTTTTTTTTTTTTTTTTTTTTTTTT  5248

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