Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_10735
Subject:
XR_382744.3
Aligned Length:
5238
Identities:
533
Gaps:
4628

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  TGAGAGCCCGTGTTGTTGCATCCCCCAGTTCCCCGGTCTGTCATGGCAGCGCCCAGGCCTCCAGCCGGTGTGTG  74

Query    1  --------ATGCTGGGGTTTTTGTCCGCACGCCAAACGGGTTTGGAGGACCCTCTTCGCCTTCGGAGAGCAGAG  66
                    |||.||.|.|||||||||||.||.||..|||||||||||||||||||||||.|.||.|||||..||
Sbjct   75  GACCCGAGATGTTGAGCTTTTTGTCCGCTCGACAGTCGGGTTTGGAGGACCCTCTTCGCTTGCGTAGAGCGCAG  148

Query   67  TCAACACGGAGAGTTTTGGGACTGGAATTAAATAAAGACAGAGATGTTGAAAGAATCCACGGCGGTGGAATTAA  140
            ||.||||||||.||..||||.|||||.|||||.||||||||.|||||.|||||||||||.|||.||||..||||
Sbjct  149  TCCACACGGAGGGTCCTGGGGCTGGAGTTAAACAAAGACAGGGATGTGGAAAGAATCCATGGCAGTGGGGTTAA  222

Query  141  CACCCTTGACATTGAACCTGTTGAAGGGAGATACATGTTATCAGGTGGTTCAGATGGTGTGATTGTACTTTATG  214
            ||||||.||||||||.||.||||||||.|||||||||||.||||||||.||.|||||.|||.|||||||.||||
Sbjct  223  CACCCTCGACATTGAGCCCGTTGAAGGAAGATACATGTTGTCAGGTGGCTCCGATGGCGTGGTTGTACTCTATG  296

Query  215  ACCTTGAGAACTCCAGCAGACAATCTTATTACACATGTAAAGCAGTGTGTTCCATTGGCAGAGATCATCCTGAT  288
            |||||||||||.||||||||||..|..||||||||||||||||||||||||||.||||||||...|||||.|||
Sbjct  297  ACCTTGAGAACGCCAGCAGACAGCCCCATTACACATGTAAAGCAGTGTGTTCCGTTGGCAGAAGCCATCCCGAT  370

Query  289  GTTCACAGATACAGTGTGGAGACTGTACAGTGGTATCCTCATGACACTGGCATGTTCACATCAAGCTCATTTGA  362
            |||||||.||||||.|||||||||||.|||||||||||||||||||||||||||||||||||.|||||||||||
Sbjct  371  GTTCACAAATACAGCGTGGAGACTGTTCAGTGGTATCCTCATGACACTGGCATGTTCACATCCAGCTCATTTGA  444

Query  363  TAAAACTCTGAAAGTATGGGATACAAATACATTACAAACTGCAGATGTATTTAATTTTGAGGAAACAGTTTACA  436
            |||||||||||||||.|||||||||||.|||||.||..||||||||||.|||||||||||||||||||||||||
Sbjct  445  TAAAACTCTGAAAGTGTGGGATACAAACACATTGCAGGCTGCAGATGTGTTTAATTTTGAGGAAACAGTTTACA  518

Query  437  GTCATCATATGTCTCCAGTCTCCACCAAGCACTGTTTGGTAGCAGTTGGTACTAGAGGACCCAAAGTACAACTT  510
            |||||||.|||||.||||...||||||||||||||.|||||||||||||.||.|||||||||||.|||||||||
Sbjct  519  GTCATCACATGTCCCCAGCAGCCACCAAGCACTGTCTGGTAGCAGTTGGAACAAGAGGACCCAAGGTACAACTT  592

Query  511  TGTGACTTGAAGTCTGGATCCTGTTCTCACATTCTACAGGGT------------ATTTT--TATTT--------  562
            ||||||||.|||||||||||||||||||||||||||||||||            ||.||  .|.||        
Sbjct  593  TGTGACTTAAAGTCTGGATCCTGTTCTCACATTCTACAGGGTCACAGACAGGAAATCTTGGCAGTTTCCTGGTC  666

Query  563  -------------TATTTC----AAACGGCAACTACT-----TTGAGTAAACGATTCAA-------TAAAAAGA  607
                         |||.||    .|||.||||.|.||     |.|||||||  |||  |       |.|.||| 
Sbjct  667  ACCACGCCATGACTATATCTTGGCAACAGCAAGTGCTGACAGTAGAGTAAA--ATT--ATGGGATGTGAGAAG-  735

Query  608  AACG-------------TTAC-----------------------------------------------------  615
            |.||             ||||                                                     
Sbjct  736  AGCGTCAGGATGCTTGCTTACTCTTGACCAGCATAATGGGAAAAAGTCACAAGCTGCTGAATCAGCAAACACTG  809

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct  810  CTCACAATGGGAAAGTTAACGGCTTATGTTTTACAAGTGACGGCCTTCACCTGCTCACCATTGGCACAGACAAC  883

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct  884  CGAATGCGCCTCTGGAATAGCTCCAGCGGGGACAACACCCTGCACCATCGCTGTGTACGCAGTCCACTCGGGAG  957

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct  958  AGCGGCTCGCCATGCTCAAGGGACATTACAAAAGCGTCGACTGCTGTGTGTTCCAGCCTAATTTCCAGGAACTT  1031

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 1032  TACAGTGGAAGCAGGGACTGCAATATTCTTGCTTGGGTACCACCTTCCTATGAGCCAGTTCCTGATGATGACGA  1105

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 1106  TGAAGCTCCAGCCAAATCCCAGTTAAACCCAGCATTCGCGGACGCCTGGAGCAGCAGTGACGAGGATGGGTGAC  1179

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 1180  TGTCAGCCCTGGCTCCTTGTCCATCAGACTTCCACGACAGTGTTGTGTGCACTTCAGCACGAGCAGGGTTGTTC  1253

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 1254  TTCCCGTTATTGTTGGTTTTGAGACAGTGTCTCACGATGTAACCCTGGCTAGCCTGGACTAGCCTGGAACTCTG  1327

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 1328  TATAGAGCAGACTCGGCTCACACTGGCAGCTATTCTGCCTCTGCTCCCAGGTGCTGGGGTTAGAGGTGTATACC  1401

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 1402  ACGTGGCCCCTCCTGTACATGTGTGTGATTGTTTGTTTCATTGTTTGTAAACTCTTCAGTCAGTTTTTAACCTG  1475

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 1476  TTAATCCTGAGTTTGGGATATTTCCCTGTGTGCTTTAAAATGAGATCGATGTGTATGATACCCTGAAATATACT  1549

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 1550  TTTCTGTCGGTTAATTAATCAGAACTTGTCTCCTTGAGCGCATTCACCAGGGTGGTGGGCCAGCCCCTACGGGC  1623

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 1624  ACAGCCCAAGAACAGACTTGTTATTCCCAGCTGGGACCTTCATATGTGCATCCAAGGAGCTGAAAGTATGACCC  1697

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 1698  AGGAAGCTCTCAGCTCTGACTCCTGACTGTGCTGCCAGCCTGCCCTTCCCACCTTCAGGGAGGAGTTTAGCAAG  1771

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 1772  GAGGATTAGAGAAACTTGTTGCAACAGTGGCATCATAATGCTAGATTTTTTACTCAAACTGAATGGCTTCATGT  1845

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 1846  AATCGAGCCTCTTCTCCCTCATATTGAATGTTAGCCACTCATGCATCTTGCAGTGTGAACATCGTATCACATAG  1919

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 1920  GCAATCCCTGACCACTTTGTATTGCTCTCAGAGGGCAGCTTACACTCAGTCTTAATTCCTTCCTGTGAAACTCA  1993

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 1994  GCAAAATCCATGCAGGGATGTAGATTAAACATGAAATGCCATACAATTGTTCTTTCCTTTCCTTGTGTCAACTC  2067

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 2068  AGGAGTGATTGTTATGAAGTCTCCTCCATTCTTTGTGTGTGTGTGTGTGTGTGTTAATTTAAGTTCTGTTGCTG  2141

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 2142  TGATAAAATACCCTGAACAAAGACAATTTAGGAGAGAAAGTGTTTATTTCAGTTAACCTAGAATTGTTAACAAA  2215

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 2216  CACTTTCACTGTGACTCACTGTGGAAAAGTCAAGACAGAAGCCTCACAAAGCTAGGCACATGGCCTTGCAGTCA  2289

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 2290  GAGAAGTGAGTGCGCAGAGCCTTCGCTGCCCAGCTAAAGTGAAGTGACCTCACGGAGAGAAATGGCTTCTCTAA  2363

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 2364  CTGAAACTCTATTCATGAAATCTGTGCCGAAAAGTTCCATCTAGAACAGACAAGGAAAAGATAGAAAATAAAAC  2437

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 2438  TTTAGAGAAATTCTGAAGACAGGCCCTGAGTTATACCAACTGTAAGATGCAAATGACTTCAGGCTGGTGTGAAC  2511

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 2512  ACGGTGACTGACGAGGGAGGTGGGAACAGGGAGGTGGGAACAGGGAGGGTTGTGTGTTTGCGGCAAACCTGGGA  2585

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 2586  AGCAGGAAATAGTAGTCATGTTTTTCATGTCTGGAATCAAATGCCTAACAAAGGAGGAAGCATCGATTCTAGCA  2659

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 2660  AATGGTTTGAATGTACAGGACACCGAGGTGGAAAGAAACAGATGGTAGGAACAGCGACAGAAGCAGGAGGCAGA  2733

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 2734  CAAGAAGGCACAGACAGGACAGGAAGCAGCGGGGCCAGGCATGAATGTCAAGAGTGCAGTCTCAGAAAAACAGC  2807

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 2808  ACTGCCAGCTAGGATCTGAATACCATGGGGACATTTTACATTCATCCACCACTGGTCTCTATAGGTTCATGGCC  2881

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 2882  ATCTCATAATGCAAAATGCATTTGGTTCAACTTCAAAAGTCCCCGTACTCCTTCAAATCCAACCCTTGAAAGCG  2955

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 2956  CTAATATTCCCTTGTTCCTGTAGAATAGACGAGTAACCATTCCCATTCCACCACAGCGGAAAGACTGGACCAAA  3029

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 3030  GCAAGATGCAGACCCAGCAGAGGGAAGGAAGCTCAAGTTCCATGTCCGCACCTGGGCCTATTATGGCATCTTGA  3103

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 3104  CTTCAACAGGCTCAGCTCCATTCTTTAGATCTGTTGCCAGCAGCATGCCTGGCCTTTCTTAGACCAGTTCCACC  3177

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 3178  CAGTGCCTGGACCTTTCTTCCCTCAGATATGCCACACTTCTGATACCTGCAGTATCCTGGGGTCTCCACTGTGA  3251

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 3252  CTTGAACTTCCCCTTTACAGTTCATGCACGGCCCACTCAGGAGCTCCATGCAGGGAGCCTGGCCTCCCTTCCGT  3325

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 3326  GGCTCTTCTGGAATCTCGGTGCACGCTTCCATGATACTTGGAGTTTGCAGGGCTGGAAAACTAACACTACATAG  3399

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 3400  AAAACACCAAGTGCTGCTGTCCTTCCCAGATGTAGCCTGGCACTCTTCAGCCATGGCTGCAGCAGCTTCCATGT  3473

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 3474  GATCTAGGATGGGCTCTCGCTTTTGAGTAGGGAACCCTGCGGAGGCTCTCTGACTTCGGACACCTCTGCTCTCT  3547

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 3548  CTCTGAGTTCTCATGTTTATATCCTGGGACTTAGAGCCGGACTGTCTGTCGGGCTGTCGGGTGCAGAGCTAGGT  3621

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 3622  TTCTTTCTCTTTCCTATCATTCACCTTACTACTAGCTGCTGTCCCCACACACACACACACACACACACACACAC  3695

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 3696  TGCAAGTTTAAACTCATTCAGCTTATTTCTTGCCTAGCTGTAGATTTATCATCTTTCTACTTTCTTCCTGTAAG  3769

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 3770  TCTGGGCAGTGAGCAGTGACCATCCTCCAGCCTGTGTGCTCTGCTGGCCTGAAGCTTCCTCCACAAAGCAGTTT  3843

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 3844  ATCCTAAATTCAACGTCACTCGGATTATCAGGACATGGCTGATTATAACACGAGTAGCCTCTAGTTCAGTTCCA  3917

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 3918  GTTTGGGTCCTCCTTCCTCTTGGACTCGAAAGCATCTCTCTTGGTGGTGTGATTTTCTGAGCTCCAGCTAAAAT  3991

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 3992  GGCTCAGTAAGTCTACTTACAGCATTCAGGATGTTCTTTAAGCCACAACTCTAACTTAATCTTTCTCCTGCAAA  4065

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 4066  TTAGTCCCAAAGTTTGCAGGACACATAATCACATTTATCTTAGCAACAACCCTACTCCATAGCACAAACCTTGC  4139

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 4140  TCTCAGTGCCAGTTTTATTTTTTTAACATTTGTTTTTATTATTTTTATGATATGTATCGTATGGACATGTGTCG  4213

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 4214  GTGAGTGCAGAGACCCGTGGAGCTCAGCAGTGTCTGATCCCCTCGGAACTGTAGTTACAGGTAGTTCTGGATGC  4287

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 4288  TAAGAACCAAACTTGGGGTCTCTAGAAATACAGTACTGAGACATTTCTCCAGCGCCATGTTTTCTGTGTTAGTC  4361

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 4362  TTCACACAGTGACCAAATAGCTGGCAAGAAAAAAAATAAAAATCAAAGCAAAAGGAGGAAGGATTGATTGACTT  4435

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 4436  AGTTTATTAAAGCAACGAACTTAGTTCCGTCAAACCTTGCCAGAAATGGAATGGCAGAAGCCTGGCACACAGGG  4509

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 4510  AATTTTGCCTTTCAGAGAATATACCAGGGAAAGCTAACTACAGAAAGAACAACCACCTTGCCTGTCACTGTGTT  4583

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 4584  TAGATAGGCTGGTTACAGCAGGGCTGGGTTAGAGAGGGACTCAGTACTGGGGAGAATTAGATTGCTGCCCTATA  4657

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 4658  GTTAACAGTTCAGTTGTGAATGTGGCTTTTCTTTTTGTGTGCAGGGGTTTGGTTTTGGTGTTTTGTTTGTTTTT  4731

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 4732  GAGACAGGCTGACCTTGAGCTTGCTGTGTATGTAGCCCAGTGTCTTAGTGAGTGTTCTATTACTGTGAAGCCAC  4805

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 4806  ACCAAAACCACAGTGACTCTTACAAGGGAAGGCATTTAATTGGGGGCTCAGTCCATTTTCATGAAGGTGAAGAT  4879

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 4880  CGGGATGGCACGCAGGGAGACATGGCACTGGAGAGGTAGCTAAGAGTTGTACGTCTGAGTCTGCAGACAGCAGG  4953

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 4954  AAGAGAGCCTCTAGACTTGGAATGGGCTTTGGAACCTCAGGGTCTACACCTAATGACACACTTCCTCCAACAAG  5027

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 5028  GCCACACCTCTTTGTCCTTTCATATAGTGCCCCTCTCTGGTGCCCAGTATACAACTCTGTGAGCCTATGGAGGC  5101

Query  616  --------------------------------------------------------------------------  615
                                                                                      
Sbjct 5102  CGTTCTCATTCAAACCACCACACTCAGTCTGGATTCCAGCTCCGGATCCTGCAGCCTTAGCTTCCCCGGTGCTG  5175

Query  616  ----------------------------------------------------------  615
                                                                      
Sbjct 5176  GGATGGCAGACATGGGCCTCCACAATGCCTAGTCTTTTTTTTTTTTTTTTTTTTTTTT  5233

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