Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_10792
Subject:
XR_002957453.1
Aligned Length:
4372
Identities:
217
Gaps:
4124

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GTTACGCCGCTGATGTGGAGTAGGGCCGAGCGCGGAACGCGAGGGGCTGCTGGGGTGTTTGTCGCAGCGGGTTT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TCCTCGGCGGTTTGCGGAGCTGCTAGGATGGAGCAGGTTGCGGAGGGAGCAAGGGTGACCGCAGTCCCTGTGTC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  AGCTGCCGACAGCACTGAGGAGTTGGCCGAAGTCGAAGAAGGAGTTGGAGTAGTGGGCGAAGATAATGACGCAG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  CCGCGAGAGGAGCGGAGGCCTTTGGCGACAGTGAGGAGGACGGAGAGGATGTGTTCGAGGTGGAGAAGATCCTG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GACATGAAGACCGAGGGGGGTAAAGTTCTTTACAAAGTTCGCTGGAAAGGCTATACATCGGATGATGATACCTG  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  GGAGCCCGAGATTCACCTGGAGGACTGTAAAGAAGTGCTTCTTGAATTTAGGAAGAAAATTGCAGAGAACAAAG  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  CCAAAGCAGTCAGGAAGGATATTCAGAGACTATCCTTAAATAACGACATATTTGAGGCGAACTCTGATAGCGAT  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  CAGCAAAGTGAGACAAAAGAAGATACTTCCCCAAAGAAGAAAAAGAAAAAATTGAGGCAGAGAGAAGAGAAAAG  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  CCCAGATGATCTGAAAAAGAAAAAAGCAAAGGCCGGGAAGCTAAAAGACAAGTCCAAACCAGACCTGGAGAGCT  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  CCTTGGAAAGTTTAGTTTTTGATTTAAGGACAAAGAAAAGAATTTCTGAAGCCAAAGAAGAACTAAAGGAGTCC  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  AAAAAGCCCAAAAAAGATGAAGTAAAAGAAACAAAAGAATTAAAGAAAGTTAAAAAGGGTGAAATAAGAGATTT  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  AAAGACGAAAACAAGAGAAGATCCCAAAGAAAATAGAAAAACAAAAAAAGAAAAATTTGTCGAATCCCAGGTGG  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  AATCTGAATCAAGTGTACTTAATGATTCTCCCTTTCCAGAGGATGACAGTGAAGGGCTACATTCCGACAGCAGA  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  GAAGAGAAACAAAACACTAAAAGTGCAAGAGAGAGAGCAGGGCAGGACATGGGGCTGGAGCATGGCTTTGAGAA  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  GCCCCTAGACAGTGCCATGAGTGCTGAGGAGGATACCGATGTCAGAGGCAGGAGGAAAAAGAAGACCCCGAGAA  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  AGGCTGAGGACACTAGAGAGAACAGGAAGCTAGAGAACAAGAACGCTTTCTTAGAGAAGAAAACTGTGCCTAAA  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  AAGCAGAGGAATCAAGACAGAAGCAAAAGTGCTGCAGAGTTAGAGAAGCTGATGCCTGTATCTGCCCAAACGCC  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  AAAGGGCCGGAGGTTGAGCGGGGAAGAGAGAGGCCTCTGGTCCACGGACTCAGCCGAGGAGGACAAAGAAACCA  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  AAAGAAATGAATCCAAAGAAAAATATCAGAAAAGGCATGATTCTGACAAGGAAGAAAAAGGCAGAAAAGAGCCA  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  AAAGGATTAAAGACACTTAAGGAAATCAGAAATGCATTTGATTTATTTAAATTAACTCCAGAAGAAAAAAATGA  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  TGTTTCTGAGAATAATCGGAAAAGGGAAGAAATACCACTGGATTTTAAAACCATAGACGATCACAAAACCAAGG  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  AAAACAAACAGTCACTTAAAGAAAGGAGAAACACCAGAGACGAAACGGATACTTGGGCATACATTGCTGCAGAA  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  GGTGATCAGGAGGTTTTAGACAGCGTGTGCCAAGCAGATGAGAATTCAGATGGCAGGCAGCAGATTCTGAGTTT  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  GGGCATGGACCTGCAGTTGGAATGGATGAAGTTGGAAGATTTCCAAAAGCACCTTGATGGGAAAGATGAGAATT  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  TTGCTGCAACAGATGCAATTCCAAGTAATGTGTTAAGGGATGCTGTGAAAAATGGGGATTATATTACTGTAAAA  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  GTTGCACTTAATTCAAATGAAGAATATAACCTGGACCAAGAGGATTCCAGTGGAATGACACTGGTGATGCTTGC  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  CGCCGCCGGAGGGCAGGACGACCTCCTGCGACTCCTCATCACAAAAGGCGCGAAAGTGAACGGTCGGCAGAAGA  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  ACGGGACCACCGCCCTCATTCATGCTGCAGAGAAGAACTTTTTAACAACAGTGGCTATTCTTTTGGAAGCAGGA  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  GCTTTTGTAAATGTCCAGCAAAGCAATGGTGAGACTGCACTGATGAAGGCCTGTAAAAGAGGAAATTCAGACAT  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  CGTACGACTCGTAATTGAATGTGGAGCTGACTGCAATATTTTGTCAAAGCACCAGAATAGTGCCCTGCACTTTG  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  CGAAGCAGTCTAACAATGTGCTTGTGTACGACTTGCTGAAGAACCATTTAGAGACACTTTCAAGAGTAGCAGAA  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  GAGACAATAAAGGATTACTTTGAAGCTCGCCTTGCTCTGCTAGAACCAGTTTTTCCAATCGCATGTCATCGACT  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  CTGTGAGGGTCCAGATTTTTCAACAGATTTCAATTACAAACCCCCACAGAACATACCAGAAGGCTCTGGCATCC  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  TGCTGTTTATCTTCCATGCAAACTTTTTGGGTAAAGAAGTTATTGCTCGGCTCTGTGGACCGTGTAGTGTACAA  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  GCTGTAGTTCTGAATGATAAATTTCAGCTTCCTGTTTTTCTGGGTCTCGCTCTGTTGTCCAGGCTGGAGTGCAG  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  TGGCGCGGATTACAGCTCACTGGAGTCTTGACTTCCCAGGCACAAGCAATCCTCCCACCTCAGCCTCCTAACTA  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  CCTGGGACTAAAAATGACAGTCATTTTGTTTACTCATTCAGCCCTGTTGCAGGTCCCAATAAACTCTTCATAAG  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  GTTGACAGAAGCACCCTCTGCCAAGGTTAAGTTGCTAATAGGTGCATACAGAGTGCAGCTGCAGTGACCAAACA  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  GAAGGGACTGGGCGGAGTTCTCTTCAGACCGATTCCTATACTCTCTTTGACAGCAGTTTGGAATTCTTCTAGCA  2886

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2887  CATCTATGTAAAGTTTTGTCTGTAAACCTCTTGCAGTTAAGCCTGTTGTCTGTTGTAGTCTGTAAGATGCGACA  2960

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2961  TAGCTGTGTCTGTGCCAGTATGCCGGAATCTCAGTGCAGTGTCCAGACTGCGTATTTCAGTTTTTCCACAATGT  3034

Query    1  ------------------------------------------------------------ATGGAGTCTCGCTC  14
                                                                        |.|||||.||||||
Sbjct 3035  GGATAGTACATATGAGGATTATTTAAGAAAATTAAAGACTTCACTTTCTTTTTTCTGGAGACGGAGTTTCGCTC  3108

Query   15  -TGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCGGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGCGATTC  87
             |||||||||||||||||||||.|||...||||||||||||||||||.||||||||||..||||||||.|||||
Sbjct 3109  TTGTTGCCCAGGCTGGAGTGCAATGGTGCGATCTCGGCTCACTGCAAGCTCTGCCTCCTGGGTTCAAGTGATTC  3182

Query   88  TTCTGCCTCAGCCTCCAGAGTAGCTGGGACTATAGACATGCACCACCACGCCCGGCTAATTTTGTATTTTTGGT  161
            |.||||||||||||||.||||||||||||.||.|||||..|.|||...|.|||.|||||||||||||||||.||
Sbjct 3183  TCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGACACCCGCCATGGCACCCAGCTAATTTTGTATTTTTAGT  3256

Query  162  CGAGACGGGGTTTTGCCATGTTAGTCAGGCTGGTCTTGAACTCCTGACCTCAAGTGATCC-ACCACCTCGGCCT  234
            .||||.|||||||..|||||||.|||||||||||||||||||||||||||||.||||||| .||.|||||||||
Sbjct 3257  AGAGATGGGGTTTATCCATGTTGGTCAGGCTGGTCTTGAACTCCTGACCTCAGGTGATCCGCCCGCCTCGGCCT  3330

Query  235  CCCAAAGTG-TTGAGA----------------------------------------------------------  249
            ||||||||| ||| ||                                                          
Sbjct 3331  CCCAAAGTGCTTG-GATTACAGGCATGAGCCACCGCACCCAGCAAGAGTTATTTTCTTAACTTGAAATTTTCTA  3403

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3404  CTAGCCCTGGTGAACTTCTGTGCTTAAAAAAAAAAAAAAAAAAAGGAAAAATTCAGCTCTAAAACATTTGCTTA  3477

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3478  CAGCAAGGGAGCCATGTTATATTCAAGTTACCCAAGCACCAAATAAAGTGTGGGTTTGCTGCCCTTGAAAGGGT  3551

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3552  TGGGAGGCCTGATCTTTTTCTAGTAGACAGTTGCCACACATTCCCCAAGCACAAAAGGTGGAGATGGCAGTCAC  3625

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3626  TTTGTAAATATGCTGTAGTCACTTATCATCTTTTCAAAGGGTAACAAGAGAATCTAAGATGTAGTAAGAATGTA  3699

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3700  AACCAGTACACTATGAGACCTAAAAGAGAGTATTAAATGTGAACTTTTAGCAGAGCGTGGTGGCTCACACCTAT  3773

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3774  AATCCCAGCGCTTTGGAGGCTGAGGTTGGAGGATTGCTTAAGTCCAGGAGTTCAAGACCAGCCTGGGTAACATG  3847

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3848  GGGTGGAACAAGCCTGTAGTCCCAGATACTCAGGAGGCTGAGGTGAAAGGATTGCTTGAGCCAGGGAGGTCAAG  3921

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3922  GCTGCAGTGAGCCGTGAAAGGCCACTGCACTCCAGCCTGAGTGACAGAATGAGACCTTGTCTCAAAAAAAAAAA  3995

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3996  AAAGTTTCTTGGAACCTATACGGTTTTTTTTTGTTTTTTTTTTTTGAAAAGCCAGACCTTGTGCCCTTGTTTTG  4069

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4070  AACACCGACTGGGAAGATGGGGCTTAGGTAACAGCCAAACCTGGCTGTCAGCTGTGTGGGAGCCACCACCCTCT  4143

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4144  CTGGGAAGAGTTCCTGCTTCTGTATGGCAAGCATAAATCAAGCTCAGTCTGGGTTATGGAGAAGTTGAAAATTG  4217

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4218  TTTTGTTCCTCATTAGTTTATAATTGTATGAAATACGATTTTAATGAAAACTTTTCAGAATTCACGTTTGTGTA  4291

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4292  GATATTTCAGAGAACCATTTTTACTTTACATCCTAAAACTGCCTTTTCCTATGGTTTTGTCAATAAAACACTAT  4365

Query  250  ------  249
                  
Sbjct 4366  GATGTT  4371

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