Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_10983
Subject:
NM_177390.3
Aligned Length:
3019
Identities:
1170
Gaps:
1712

Alignment

Query    1  ATGGCGGAGCAGGAGAGCCTGGAATTCGGCAAGGCAGACTTCGTGCTGATGGACACCGTCTCCATGCCCGAGTT  74
            ||||||||||||||||||||.||.|||||||||||.||||||||||||||||||||||||||||||||||||||
Sbjct    1  ATGGCGGAGCAGGAGAGCCTTGAGTTCGGCAAGGCGGACTTCGTGCTGATGGACACCGTCTCCATGCCCGAGTT  74

Query   75  CATGGCCAACCTCAGGCTCAGATTTGAAAAAGGGCGCATCTATACGTTCATTGGAGAAGTCGTCGTTTCTGTGA  148
            ||||||||||||.||||||||||||||.|||||.||||||||.||.|||||.||||||||.||.||||||||||
Sbjct   75  CATGGCCAACCTTAGGCTCAGATTTGAGAAAGGACGCATCTACACATTCATCGGAGAAGTGGTTGTTTCTGTGA  148

Query  149  ACCCTTACAAGTTGTTGAACATCTATGGAAGAGACACAATTGAGCAGTATAAAGGCCGTGAGCTGTATGAGAGA  222
            |.||.||||||.||.|||||||||||||.||.|||||..|.||||||||||||||.||||||||.|||||||||
Sbjct  149  ATCCATACAAGGTGCTGAACATCTATGGGAGGGACACTGTCGAGCAGTATAAAGGTCGTGAGCTTTATGAGAGA  222

Query  223  CCGCCTCACCTTTTTGCTATTGCGGATGCTGCTTACAAGGCTATGAAGAGGCGATCAAAAGACACTTGTATTGT  296
            ||.|||||.||.|||||||||||.||.||||||||||||||.|||||||||||||||||||||||.||||||.|
Sbjct  223  CCTCCTCATCTCTTTGCTATTGCTGACGCTGCTTACAAGGCCATGAAGAGGCGATCAAAAGACACCTGTATTAT  296

Query  297  GATATCAGGGGAAAGTGGAGCTGGTAAAACGGAAGCCAGTAAGTACATTATGCAGTATATTGCGGCCATCACCA  370
            ||||||||||||||||||||||||||||||.||.||||||||||||||.|||||||||||.||.||||||||||
Sbjct  297  GATATCAGGGGAAAGTGGAGCTGGTAAAACAGAGGCCAGTAAGTACATCATGCAGTATATCGCCGCCATCACCA  370

Query  371  ACCCCAGTCAGAGAGCAGAGGTTGAAAGAGTGAAGAATATGTTGCTTAAGTCCAACTGTGTTTTGGAAGCTTTT  444
            |||||||.||||||||||||.|.|||||||||||||||||||||||.|||||.|||||.|||||||||||||||
Sbjct  371  ACCCCAGCCAGAGAGCAGAGATAGAAAGAGTGAAGAATATGTTGCTGAAGTCAAACTGCGTTTTGGAAGCTTTT  444

Query  445  GGAAATGCCAAAACCAACCGTAATGACAACTCAAGCAGGTTTGGAAAATACATGGATATCAACTTTGACTTCAA  518
            |||||||||||||||||.|||||||||||.||.|||||||||||.|||||||||||||||||||||||||||||
Sbjct  445  GGAAATGCCAAAACCAATCGTAATGACAATTCCAGCAGGTTTGGGAAATACATGGATATCAACTTTGACTTCAA  518

Query  519  GGGTGACCCTATTGGTGGGCATATCAATAACTACTTACTAGAAAAGTCTCGAGTGATTGTGCAACAGCCAGGAG  592
            |||.|||||.|||||.||.|||||.|||||||||||.||.|||||||||||.|||||||||||.|||||.||||
Sbjct  519  GGGAGACCCCATTGGGGGACATATTAATAACTACTTGCTGGAAAAGTCTCGTGTGATTGTGCAGCAGCCTGGAG  592

Query  593  AAAGAAGCTTTCATTCTTTCTATCAGCTACTCCAAGGAGGTTCAGAACAAATGCTACGCTCTCTACATCTCCAG  666
            ||.|.|||||.|||||||||||||||||.|||||.||||||||.||.||.|||||.|.||||||.||.||.|||
Sbjct  593  AACGGAGCTTCCATTCTTTCTATCAGCTCCTCCAGGGAGGTTCTGAGCAGATGCTGCACTCTCTTCACCTGCAG  666

Query  667  AAATCCCTTTCATCCTACAACTATATTCATGTGGGAGCTCAATTAAAGTCTTCTATCAATGATGCTGCCGAATT  740
            ||.||.||.||||||||||||||.||.|.||||||.||.||..|.||||||||.||||||||.|||||.||.||
Sbjct  667  AAGTCACTCTCATCCTACAACTACATCCGTGTGGGGGCACAGCTGAAGTCTTCCATCAATGACGCTGCTGAGTT  740

Query  741  CAGAGTTGTTGCTGATGCCATGAAAGTCATTGGCTTCAAACCTGAGGAGATCCAAACAGTGTATAAGATTTTGG  814
            ||.||||||.|||||||||||||||||.|||||.|||||||||||||||||.|||||.||||||||.|||||||
Sbjct  741  CAAAGTTGTAGCTGATGCCATGAAAGTAATTGGATTCAAACCTGAGGAGATTCAAACTGTGTATAAAATTTTGG  814

Query  815  CTGCTATTCTGCACTTGGGAAATTTAAAATTTGTAGTAGATGGTGACACGCCTCTTATTGAGAATGGCAAAGTA  888
            |||.||||||.|||||||||||||||||||||.|||||||||||||||||||.|||||||||||||||||.||.
Sbjct  815  CTGTTATTCTTCACTTGGGAAATTTAAAATTTATAGTAGATGGTGACACGCCGCTTATTGAGAATGGCAAGGTT  888

Query  889  GTATCTATCATAGCAGAATTGCTCTCTACTAAGACAGATATGGTTGAGAAAGCCCTTCTTTACCGGACTGTGGC  962
            ||.|||.||||||||||||||||.|||||||||.||||.|||||.|||||||||||.|||||||||||.|||||
Sbjct  889  GTGTCTGTCATAGCAGAATTGCTGTCTACTAAGGCAGACATGGTGGAGAAAGCCCTGCTTTACCGGACGGTGGC  962

Query  963  CACAGGCCGTGACATCATTGACAAGCAGCACACAGAACAAGAGGCCAGCTACGGCAGAGACGCCTTTGCCAAGG  1036
            ||||||||||||||||||.|||||.||||||||.|||||.||||||||||||||||||||||||||||||||||
Sbjct  963  CACAGGCCGTGACATCATCGACAAACAGCACACGGAACAGGAGGCCAGCTACGGCAGAGACGCCTTTGCCAAGG  1036

Query 1037  CAATATATGAGCGCCTTTTTTGTTGGATCGTTACTCGCATCAATGATATTATTGAGGTCAAGAACTATGACACC  1110
            ||||||||||||||||.|||||||||||.|||||||||||||||||.||.||.|||||||||||||||||||||
Sbjct 1037  CAATATATGAGCGCCTCTTTTGTTGGATTGTTACTCGCATCAATGACATCATCGAGGTCAAGAACTATGACACC  1110

Query 1111  ACAATCCATGGGAAAAACACTGTTATTGGTGTCTTGGATATCTATGGCTTTGAAATCTTTGACAACAACAGTTT  1184
            ||.||.||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||.||
Sbjct 1111  ACGATACATGGGAAAAACACGGTTATTGGTGTCTTGGATATCTATGGCTTTGAAATCTTTGACAACAACAGCTT  1184

Query 1185  TGAACAATTCTGTATCAATTACTGCAATGAGAAACTGCAGCAGCTATTTATTCAGCTGGTTCTGAAGCAAGAAC  1258
            |||.||.|||||.||.||.||||||||.|||||||||||||||||.||.|||||||||||.||||||||.||.|
Sbjct 1185  TGAGCAGTTCTGCATTAACTACTGCAACGAGAAACTGCAGCAGCTCTTCATTCAGCTGGTGCTGAAGCAGGAGC  1258

Query 1259  AAGAGGAATACCAGCGGGAAGGGATCCCCTGGAAACATGTGGGATTGCTA------------------------  1308
            |||||||.|||||||||||.||.|||||.||||||||..| .||||.||.                        
Sbjct 1259  AAGAGGAGTACCAGCGGGAGGGCATCCCTTGGAAACACAT-TGATTACTTCAACAACCAGATCATTGTGGACCT  1331

Query 1309  --------------------------------------------------------------------------  1308
                                                                                      
Sbjct 1332  CGTGGAGCAGCAGCACAAAGGCATCATTGCAATCCTGGATGACGCGTGTATGAATGTTGGCAAAGTCACTGACG  1405

Query 1309  --------------------------------------------------------------------------  1308
                                                                                      
Sbjct 1406  GAATGTTCCTTGAGGCCCTTAACAGTAAATTGGGCAAACATGGTCATTTTTCCAGCCGAAAGACCTGTGCCTCA  1479

Query 1309  --------------------------------------------------------------------------  1308
                                                                                      
Sbjct 1480  GACAAAATCCTGGAGTTTGATCGGGACTTTCGAATCCGTCATTATGCGGGTGACGTGGTCTATTCTGCCATCGG  1553

Query 1309  --------------------------------------------------------------------------  1308
                                                                                      
Sbjct 1554  TTTTATCGACAAAAATAAAGATACTTTATTTCAAGATTTCAAGCGCCTTATGTATAACAGCTCAAATCCTGTGC  1627

Query 1309  --------------------------------------------------------------------------  1308
                                                                                      
Sbjct 1628  TGAAGAATATGTGGCCCGAAGGCAAGCTCAGCATTACAGAGGTGACCAAGAGGCCTCTGACCGCTGCCACCTTG  1701

Query 1309  --------------------------------------------------------------------------  1308
                                                                                      
Sbjct 1702  TTTAAGAATTCTATGATTGCTTTAGTAGACAACCTTGCTTCAAAGGAGCCGTACTATGTGCGTTGCATCAAACC  1775

Query 1309  --------------------------------------------------------------------------  1308
                                                                                      
Sbjct 1776  CAATGACAAGAAGTCCCCACAGATATTTGACGATGAGCGCTGCCGCCATCAGGTAGAATACCTGGGGCTGCTGG  1849

Query 1309  --------------------------------------------------------------------------  1308
                                                                                      
Sbjct 1850  AGAATGTGAGAGTGCGCCGGGCAGGGTTTGCCTTCCGCCAGACCTACGAGAAGTTTCTTCACAGGTACAAGATG  1923

Query 1309  --------------------------------------------------------------------------  1308
                                                                                      
Sbjct 1924  ATCTCTGAGTTCACCTGGCCTAACCATGACCTTCCTTCAGACAAAGAGGCTGTCAAGAAACTCATAGAGCGATG  1997

Query 1309  --------------------------------------------------------------------------  1308
                                                                                      
Sbjct 1998  TGGCTTTCAGGATGACGTAGCTTATGGGAAGAGCAAAATTTTCATTCGAACACCCCGTACACTGTTCACCCTGG  2071

Query 1309  --------------------------------------------------------------------------  1308
                                                                                      
Sbjct 2072  AAGAACTTCGTGCCCAGATGCTCGTCAGGGTTGTCCTCTTCCTACAAAAGGTGTGGCGTGGCACCCTGGCCCGC  2145

Query 1309  --------------------------------------------------------------------------  1308
                                                                                      
Sbjct 2146  ATGCGGTACAAGAGGACCAAGGCAGCTCTGACAATAATCAGGTACTACAGGCGCTATAAAGTGAAGTCGTACAT  2219

Query 1309  --------------------------------------------------------------------------  1308
                                                                                      
Sbjct 2220  CCACGAGGTGGCCAGACGATTCCACGGTGTCAAGAACATGAGGGACTATGGGAAGCATGTGAAGTGGCCAACCC  2293

Query 1309  --------------------------------------------------------------------------  1308
                                                                                      
Sbjct 2294  CACCAAAAGTCCTGCGGCGTTTCGAGGAGGCCCTGCAGTCGATTTTTAATAGATGGAGAGCATCCCAACTCATC  2367

Query 1309  --------------------------------------------------------------------------  1308
                                                                                      
Sbjct 2368  AAGACCATACCTGCATCAGACCTTCCCCAGGTCAGGGCAAAGGTTGCAGCCATGGAGATGCTGAAAGGTCAAAG  2441

Query 1309  --------------------------------------------------------------------------  1308
                                                                                      
Sbjct 2442  GGCAGACCTTGGACTCCAGAGAGCCTGGGAAGGCAACTATCTTGCTTCGAAGCCAGACACACCTCAGACCTCAG  2515

Query 1309  --------------------------------------------------------------------------  1308
                                                                                      
Sbjct 2516  GCACTTTCGTCCCAGTTGCTAATGAGCTGAAACGCAAGGACAAGTATATGAACGTTCTCTTTTCCTGTCACGTC  2589

Query 1309  --------------------------------------------------------------------------  1308
                                                                                      
Sbjct 2590  CGGAAGGTGAATCGGTTTAGTAAGGTAGAAGACCGAGCAATTTTTGTCACTGACCGTCACCTGTATAAAATGGA  2663

Query 1309  --------------------------------------------------------------------------  1308
                                                                                      
Sbjct 2664  CCCCACTAAGCAGTACAAGGTGATGAAGACTATCCCACTGTACAACTTGACTGGTCTGAGTGTCTCCAATGGAA  2737

Query 1309  --------------------------------------------------------------------------  1308
                                                                                      
Sbjct 2738  AGGACCAACTTGTAGTGTTCCATACAAAAGACAACAAAGACCTCATTGTCTGCCTCTTCAGCAAACAGCCAACC  2811

Query 1309  --------------------------------------------------------------------------  1308
                                                                                      
Sbjct 2812  CATGAGAGTCGTATTGGAGAACTTGTTGGAGTCCTGGTGAATCATTTCAAGAGTGAGAAGCGCCACCTTCAAGT  2885

Query 1309  --------------------------------------------------------------------------  1308
                                                                                      
Sbjct 2886  GAACGTCACCAACCCGGTGCAGTGCAGCCTGCACGGGAAGAAATGCACCGTCTCTGTGGAGACCCGGCTCAATC  2959

Query 1309  -----------------------------------------------------------  1308
                                                                       
Sbjct 2960  AGCCACAGCCTGACTTCACCAAGAACCGCTCGGGCTTCATCCTCAGTGTGCCCGGGAAC  3018

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.