Nucleotide Global Alignment

Description

• Query: ccsbBroadEn_11058
• Subject: NM_001318102.1
• Aligned Length: 1441
• Identities: 851
• Gaps: 491

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGAGCCTCCATTTCTTATACTACTGCAGTGAACCAACCTTGGATGTGAAAATTGCCTTTTGTCAGGGATTCGA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TAAACACGTGGATGTGTCATCTATTGCCAAACATTACAACATGAGCAAAAGCAAGGTGGACAACCAGTTCTACA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GTGTGGAAGTGGGGGACTCAACCTTCACCGTTCTTAAGCGCTACCAGAACCTGAAGCCAATTGGCTCTGGGGCT  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  CAGGGAATAGTCTGTGCTGCGTACGACGCTGTCCTTGACAGAAATGTGGCCATTAAGAAGCTCAGCAGACCCTT  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CCAGAACCAAACTCACGCCAAGAGGGCTTACCGGGAGCTGGTCCTCATGAAGTGTGTGAACCATAAAAACATTA  370

Query    1  -----------------------------------------------------------------ATGGAACTG  9
                                                                             |||||||||
Sbjct  371  TTAGCTTATTAAATGTTTTTACACCCCAGAAAACACTGGAGGAGTTCCAAGATGTCTACTTAGTGATGGAACTG  444

Query   10  ATGGATGCCAACTTATGTCAAGTGATTCAGATGGAATTAGACCATGAGCGAATGTCTTACCTGCTGTACCAAAT  83
            |||||.||||||.|.|||||.||||||||||||||..|.|||||.|||||.|||||||||.||||||||||.||
Sbjct  445  ATGGACGCCAACCTGTGTCAGGTGATTCAGATGGAGCTGGACCACGAGCGGATGTCTTACTTGCTGTACCAGAT  518

Query   84  GTTGTGTGGCATTAAGCACCTCCATTCTGCTGGAATTATTCACAGGGATTTAAAACCAAGTAACATTGTAGTCA  157
            |.||||||||||.|||||||||||.||.|||||.||.||.||||||||.||||||||.||||||||||||||||
Sbjct  519  GCTGTGTGGCATCAAGCACCTCCACTCCGCTGGGATCATCCACAGGGACTTAAAACCCAGTAACATTGTAGTCA  592

Query  158  AGTCTGATTGCACATTGAAAATCCTGGACTTTGGACTGGCCAGGACAGCAGGCACAAGCTTCATGATGACTCCA  231
            ||||||||||||||.||||||||||.|||||.|||||||||||||||||.||.||||||||||||||||||||.
Sbjct  593  AGTCTGATTGCACACTGAAAATCCTCGACTTCGGACTGGCCAGGACAGCGGGTACAAGCTTCATGATGACTCCG  666

Query  232  TATGTGGTGACACGTTATTACAGAGCCCCTGAGGTCATCCTGGGGATGGGCTACAAGGAGAACGTTGACATGTG  305
            |||||||||||.||.|||||||||||||||||||||||||||||.||||||||||||||||||||.|||||.||
Sbjct  667  TATGTGGTGACGCGATATTACAGAGCCCCTGAGGTCATCCTGGGCATGGGCTACAAGGAGAACGTGGACATATG  740

Query  306  GTCAGTAGGGTGCATCATGGGAGAAATG-------ATAAAAGGTGCAGTGCTGTTTCCTGGCACTGATCATATT  372
            |||.||.||.||||||||||||||||||       |.||||       |.||.|||||.||.|..||..|||||
Sbjct  741  GTCTGTGGGATGCATCATGGGAGAAATGGTTCGCCACAAAA-------TCCTCTTTCCCGGAAGGGACTATATT  807

Query  373  GACCAGTGGAATAAGGTAATTGAACAACTAGGAACACCATGTCCAGAATTCATGAAGAAATTGCAACCCACAGT  446
            |||||||||||.||.||.||.||.||.||||||||.||.||||||||.|||||||||||||||||.||||||||
Sbjct  808  GACCAGTGGAACAAAGTCATCGAGCAGCTAGGAACTCCGTGTCCAGAGTTCATGAAGAAATTGCAGCCCACAGT  881

Query  447  AAGAAACTATGTGGAGAATCGGCCCAAGTATGCGGGACTCACCTTCCCCAAACTCTTCCCAGATTCCCTCTTCC  520
            .||||||||.||||||||||||||||||||.||.|||||||||||||||||.|||||.||||||||||||||||
Sbjct  882  CAGAAACTACGTGGAGAATCGGCCCAAGTACGCAGGACTCACCTTCCCCAAGCTCTTTCCAGATTCCCTCTTCC  955

Query  521  CAGCGGACTCCGAGCACAATAAACTCAAAGCCAGCCAAGCCAGGGACTTGTTGTCAAAGATGCTAGTGATTGAC  594
            |||||||.||.||||||||||||||.||||||||||||||||||||.||||||||.||||||.|||||||||||
Sbjct  956  CAGCGGATTCTGAGCACAATAAACTTAAAGCCAGCCAAGCCAGGGATTTGTTGTCTAAGATGTTAGTGATTGAC  1029

Query  595  CCAGCAAAAAGAATATCAGTGGACGACGCCTTACAGCATCCCTACATCAACGTCTGGTATGACCCAGCCGAAGT  668
            |||||.||.||.|||||.|||||||||||..|.||||||||.|||||||||||.|||||.|||||.||.|||||
Sbjct 1030  CCAGCGAAGAGGATATCGGTGGACGACGCACTGCAGCATCCGTACATCAACGTTTGGTACGACCCGGCTGAAGT  1103

Query  669  GGAGGCGCCTCCACCTCAGATATATGACAAGCAGTTGGATGAAAGAGAACACACAATTGAAGAATGGAAAGAAC  742
            ||||||||||||.||||||||||||||.||||||.||||||||||.||.|||||.||.||||||||||||||||
Sbjct 1104  GGAGGCGCCTCCGCCTCAGATATATGATAAGCAGCTGGATGAAAGGGAGCACACCATCGAAGAATGGAAAGAAC  1177

Query  743  TTATCTACAAGGAAGTAATGAATTCAGAAGAAAAGACTAAAAATGGTGTAGTAAAAGGACAGCCTTCTCCTTCA  816
            |||||||||||||.||||||||.||||||||.||||||||.|||||.|||||.|||||.|||||.||.||||||
Sbjct 1178  TTATCTACAAGGAGGTAATGAACTCAGAAGAGAAGACTAAGAATGGCGTAGTCAAAGGCCAGCCCTCGCCTTCA  1251

Query  817  GGTGCAGCAGTGAACAGCAGTGAGAGTCTCCCTCCATCCTCGTCTGTCAATGACATCTCCTCCATGTCCACCGA  890
            ||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||
Sbjct 1252  GGTGCAGCAGTGAACAGCAGTGAGAGTCTCCCTCCATCCTCGTCTGTCAACGACATCTCCTCCATGTCCACCGA  1325

Query  891  CCAGACCCTGGCATCTGACACTGACAGCAGCCTGGAAGCCTCGGCAGGACCCCTGGGTTGTTGCAGG-------  957
            |||||||||.||||||||||||||||||||||||||.||||||||.|||||..||||||||||||||       
Sbjct 1326  CCAGACCCTCGCATCTGACACTGACAGCAGCCTGGAGGCCTCGGCGGGACCGTTGGGTTGTTGCAGGTGACTAG  1399

Query  958  -----------------------------------  957
                                               
Sbjct 1400  CCGCCTGCCTGCGAAACCCAGCGTTCTTCAGGAGA  1434