Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_11168
Subject:
NM_001352785.2
Aligned Length:
2224
Identities:
2179
Gaps:
35

Alignment

Query    1  -------------------------------ATGAATAATATATTGAAACTTAAAAGCTCGGATTCTGAAGGTA  43
                                           |||.| ||.|.|   ||.|.|.|||||||||||||||||||||
Sbjct    1  ATGTTTACTCTTCCAAGTACACTGAGATCAAATGCA-AAGACA---AACCATCAAAGCTCGGATTCTGAAGGTA  70

Query   44  ATTTTGAGACTCCTGAAGCTGAAACCCCGATCCGATCACCTTTCAAGGAGTCCTGTGATCCATCACTCGGATTG  117
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   71  ATTTTGAGACTCCTGAAGCTGAAACCCCGATCCGATCACCTTTCAAGGAGTCCTGTGATCCATCACTCGGATTG  144

Query  118  GCAGGACCTGGGGCCAAAAGCCAAGAATCACAAGAAGCTGATGAACAGCTTGTAGCAGAAGTGGTTGAAAAATG  191
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  145  GCAGGACCTGGGGCCAAAAGCCAAGAATCACAAGAAGCTGATGAACAGCTTGTAGCAGAAGTGGTTGAAAAATG  218

Query  192  TTCATCTAAGACTTGTTCTAAACCTTCAGAAAATGAAGTGCCACAGCAGGCCATTGACTCTCACTCAGTCAAGA  265
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  219  TTCATCTAAGACTTGTTCTAAACCTTCAGAAAATGAAGTGCCACAGCAGGCCATTGACTCTCACTCAGTCAAGA  292

Query  266  ATTTCAGAGAAGAACCTGAACATGATTTTAGCAAAATTTCCATCGTGAGGCCATTTTCAATAGAAACGAAGGAT  339
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  293  ATTTCAGAGAAGAACCTGAACATGATTTTAGCAAAATTTCCATCGTGAGGCCATTTTCAATAGAAACGAAGGAT  366

Query  340  TCCACGGATATCTCGGCAGTCCTCGGAACAAAAGCAGCTCATGGCTGTGTAACTGCAGTCTCAGGCAAGGCTCT  413
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  367  TCCACGGATATCTCGGCAGTCCTCGGAACAAAAGCAGCTCATGGCTGTGTAACTGCAGTCTCAGGCAAGGCTCT  440

Query  414  GCCTTCCAGCCCGCCAGACGCCCTCCAGGACGAGGCGATGACGGAAGGCAGCATGGGGGTCACCCTCGAGGCCT  487
            ||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||
Sbjct  441  GCCTTCCAGCCCGCCAGACGCCCTCCAGGACGAGGCGATGACAGAAGGCAGCATGGGGGTCACCCTCGAGGCCT  514

Query  488  CCGCAGAAGCTGATCTAAAAGCTGGCAACTCCTGTCCAGAGCTTGTGCCCAGCAGAAGAAGCAAGCTGAGAAAG  561
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  515  CCGCAGAAGCTGATCTAAAAGCTGGCAACTCCTGTCCAGAGCTTGTGCCCAGCAGAAGAAGCAAGCTGAGAAAG  588

Query  562  CCCAAGCCTGTCCCCCTGAGGAAGAAAGCAATTGGAGGAGAGTTCTCAGACACCAACGCTGCTGTGGAGGGCAC  635
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  589  CCCAAGCCTGTCCCCCTGAGGAAGAAAGCAATTGGAGGAGAGTTCTCAGACACCAACGCTGCTGTGGAGGGCAC  662

Query  636  ACCTCTCCCCAAGGCATCCTATCACTTCAGTCCTGAAGAGTTGGATGAGAACACAAGTCCTTTGCTAGGAGATG  709
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  663  ACCTCTCCCCAAGGCATCCTATCACTTCAGTCCTGAAGAGTTGGATGAGAACACAAGTCCTTTGCTAGGAGATG  736

Query  710  CCAGGTTCCAGAAGTCTCCCCCTGACCTTAAAGAAACTCCCGGCACTCTCAGTAGTGACACCAACGACTCAGGG  783
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  737  CCAGGTTCCAGAAGTCTCCCCCTGACCTTAAAGAAACTCCCGGCACTCTCAGTAGTGACACCAACGACTCAGGG  810

Query  784  GTTGAGCTGGGGGAGGAGTCGAGGAGCTCACCTCTCAAGCTTGAGTTTGATTTCACAGAAGATACAGGAAACAT  857
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  811  GTTGAGCTGGGGGAGGAGTCGAGGAGCTCACCTCTCAAGCTTGAGTTTGATTTCACAGAAGATACAGGAAACAT  884

Query  858  AGAGGCCAGGAAAGCCCTTCCAAGGAAGCTTGGCAGGAAACTGGGTAGCACACTGACTCCCAAGATACAAAAAG  931
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  885  AGAGGCCAGGAAAGCCCTTCCAAGGAAGCTTGGCAGGAAACTGGGTAGCACACTGACTCCCAAGATACAAAAAG  958

Query  932  ATGGCATCAGTAAGTCAGCAGGTTTAGAACAGCCTACAGACCCAGTGGCACGAGACGGGCCTCTCTCCCAAACA  1005
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  959  ATGGCATCAGTAAGTCAGCAGGTTTAGAACAGCCTACAGACCCAGTGGCACGAGACGGGCCTCTCTCCCAAACA  1032

Query 1006  TCTTCCAAGCCAGATCCTAGTCAGTGGGAGAGCCCCAGCTTCAACCCCTTTGGGAGCCACTCTGTTCTGCAGAA  1079
            |||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1033  TCTTCCAAGCCAGATCCTAGTCAGTGGGAAAGCCCCAGCTTCAACCCCTTTGGGAGCCACTCTGTTCTGCAGAA  1106

Query 1080  CTCCCCACCCCTCTCTTCTGAGGGCTCCTACCACTTTGACCCAGATAACTTTGACGAATCCATGGATCACTTTA  1153
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||
Sbjct 1107  CTCCCCACCCCTCTCTTCTGAGGGCTCCTACCACTTTGACCCAGATAACTTTGACGAATCCATGGATCCCTTTA  1180

Query 1154  AACCAACTACGACCTTAACAAGCAGTGACTTTTGTTCTCCCACTGGTAATCACGTTAATGAAATCTTAGAATCA  1227
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1181  AACCAACTACGACCTTAACAAGCAGTGACTTTTGTTCTCCCACTGGTAATCACGTTAATGAAATCTTAGAATCA  1254

Query 1228  CCCAAGAAGGCAAAGTCGCGTTTAATAACGAGTGGCTGTAAGGTGAAGAAGCATGAAACTCAGTCTCTCGCCCT  1301
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1255  CCCAAGAAGGCAAAGTCGCGTTTAATAACGAGTGGCTGTAAGGTGAAGAAGCATGAAACTCAGTCTCTCGCCCT  1328

Query 1302  GGATGCATGTTCTCGGGATGAAGGGGCAGTGATCTCCCAGATTTCAGACATTTCTAATAGGGATGGCCATGCTA  1375
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1329  GGATGCATGTTCTCGGGATGAAGGGGCAGTGATCTCCCAGATTTCAGACATTTCTAATAGGGATGGCCATGCTA  1402

Query 1376  CTGATGAGGAGAAACTGGCATCCACGTCATGTGGTCAGAAATCAGCTGGTGCCGAGGTGAAAGGCATAGAGAAG  1449
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1403  CTGATGAGGAGAAACTGGCATCCACGTCATGTGGTCAGAAATCAGCTGGTGCCGAGGTGAAAGGCATAGAGAAG  1476

Query 1450  GAGACGTGCCAGAAGATGGAAGAAGACGGGTCCACTGTGCTTGGGCTGCTGGAGTCCTCTGCAGAGAAGGCCCC  1523
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1477  GAGACGTGCCAGAAGATGGAAGAAGACGGGTCCACTGTGCTTGGGCTGCTGGAGTCCTCTGCAGAGAAGGCCCC  1550

Query 1524  TGTGTCGGTGTCCTGTGGAGGTGAGAGCCCCCTGGATGGGATCTGCCTCAGCGAATCAGACAAGACAGCCGTGC  1597
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1551  TGTGTCGGTGTCCTGTGGAGGTGAGAGCCCCCTGGATGGGATCTGCCTCAGCGAATCAGACAAGACAGCCGTGC  1624

Query 1598  TCACCTTAATAAGAGAAGAGATAATTACCAAAGAGATTGAAGCAAATGAATGGAAGAAGAAATACGAAGAGACC  1671
            ||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1625  TCACCTTAATAAGAGAAGAGATAATTACTAAAGAGATTGAAGCAAATGAATGGAAGAAGAAATACGAAGAGACC  1698

Query 1672  CGGCAAGAAGTTTTGGAGATGAGGAAAATTGTAGCTGAATATGAAAAGACTATTGCTCAAATGATTGAAGATGA  1745
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1699  CGGCAAGAAGTTTTGGAGATGAGGAAAATTGTAGCTGAATATGAAAAGACTATTGCTCAAATGATTGAAGATGA  1772

Query 1746  ACAAAGGACAAGTATGACCTCTCAGAAGAGCTTCCAGCAACTGACCATGGAGAAGGAACAGGCCCTGGCTGACC  1819
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1773  ACAAAGGACAAGTATGACCTCTCAGAAGAGCTTCCAGCAACTGACCATGGAGAAGGAACAGGCCCTGGCTGACC  1846

Query 1820  TTAACTCTGTGGAAAGGTCCCTTTCTGATCTCTTCAGGAGATATGAGAACCTGAAAGGTGTTCTGGAAGGGTTC  1893
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1847  TTAACTCTGTGGAAAGGTCCCTTTCTGATCTCTTCAGGAGATATGAGAACCTGAAAGGTGTTCTGGAAGGGTTC  1920

Query 1894  AAGAAGAATGAAGAAGCCTTGAAGAAATGTGCTCAGGATTACTTAGCCAGAGTTAAACAAGAGGAGCAGCGATA  1967
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1921  AAGAAGAATGAAGAAGCCTTGAAGAAATGTGCTCAGGATTACTTAGCCAGAGTTAAACAAGAGGAGCAGCGATA  1994

Query 1968  CCAGGCCCTGAAAATCCACGCAGAAGAGAAACTGGACAAAGCCAATGAAGAGATTGCTCAGGTTCGAACAAAAG  2041
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1995  CCAGGCCCTGAAAATCCACGCAGAAGAGAAACTGGACAAAGCCAATGAAGAGATTGCTCAGGTTCGAACAAAAG  2068

Query 2042  CAAAGGCTGAGAGTGCAGCTCTCCATGCTGGACTCCGCAAAGAGCAGATGAAGGTGGAGTCCCTGGAAAGGGCC  2115
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2069  CAAAGGCTGAGAGTGCAGCTCTCCATGCTGGACTCCGCAAAGAGCAGATGAAGGTGGAGTCCCTGGAAAGGGCC  2142

Query 2116  CTGCAGCAGAAGAACCAAGAAATTGAAGAACTGACAAAAATCTGTGATGAGCTGATTGCAAAGCTGGGAAAGAC  2189
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2143  CTGCAGCAGAAGAACCAAGAAATTGAAGAACTGACAAAAATCTGTGATGAGCTGATTGCAAAGCTGGGAAAGAC  2216

Query 2190  TGAC  2193
            ||||
Sbjct 2217  TGAC  2220

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