Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_11168
Subject:
NM_001352796.2
Aligned Length:
2193
Identities:
1739
Gaps:
450

Alignment

Query    1  ATGAATAATATATTGAAACTTAAAAGCTCGGATTCTGAAGGTAATTTTGAGACTCCTGAAGCTGAAACCCCGAT  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  CCGATCACCTTTCAAGGAGTCCTGTGATCCATCACTCGGATTGGCAGGACCTGGGGCCAAAAGCCAAGAATCAC  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  AAGAAGCTGATGAACAGCTTGTAGCAGAAGTGGTTGAAAAATGTTCATCTAAGACTTGTTCTAAACCTTCAGAA  222
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  223  AATGAAGTGCCACAGCAGGCCATTGACTCTCACTCAGTCAAGAATTTCAGAGAAGAACCTGAACATGATTTTAG  296
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  297  CAAAATTTCCATCGTGAGGCCATTTTCAATAGAAACGAAGGATTCCACGGATATCTCGGCAGTCCTCGGAACAA  370
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  371  AAGCAGCTCATGGCTGTGTAACTGCAGTCTCAGGCAAGGCTCTGCCTTCCAGCCCGCCAGACGCCCTCCAGGAC  444
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  445  GAGGCGATGACGGAAGGCAGCATGGGGGTCACCCTCGAGGCCTCCGCAGAAGCTGATCTAAAAGCTGGCAACTC  518
                  |||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct    1  ------ATGACAGAAGGCAGCATGGGGGTCACCCTCGAGGCCTCCGCAGAAGCTGATCTAAAAGCTGGCAACTC  68

Query  519  CTGTCCAGAGCTTGTGCCCAGCAGAAGAAGCAAGCTGAGAAAGCCCAAGCCTGTCCCCCTGAGGAAGAAAGCAA  592
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   69  CTGTCCAGAGCTTGTGCCCAGCAGAAGAAGCAAGCTGAGAAAGCCCAAGCCTGTCCCCCTGAGGAAGAAAGCAA  142

Query  593  TTGGAGGAGAGTTCTCAGACACCAACGCTGCTGTGGAGGGCACACCTCTCCCCAAGGCATCCTATCACTTCAGT  666
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  143  TTGGAGGAGAGTTCTCAGACACCAACGCTGCTGTGGAGGGCACACCTCTCCCCAAGGCATCCTATCACTTCAGT  216

Query  667  CCTGAAGAGTTGGATGAGAACACAAGTCCTTTGCTAGGAGATGCCAGGTTCCAGAAGTCTCCCCCTGACCTTAA  740
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  217  CCTGAAGAGTTGGATGAGAACACAAGTCCTTTGCTAGGAGATGCCAGGTTCCAGAAGTCTCCCCCTGACCTTAA  290

Query  741  AGAAACTCCCGGCACTCTCAGTAGTGACACCAACGACTCAGGGGTTGAGCTGGGGGAGGAGTCGAGGAGCTCAC  814
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  291  AGAAACTCCCGGCACTCTCAGTAGTGACACCAACGACTCAGGGGTTGAGCTGGGGGAGGAGTCGAGGAGCTCAC  364

Query  815  CTCTCAAGCTTGAGTTTGATTTCACAGAAGATACAGGAAACATAGAGGCCAGGAAAGCCCTTCCAAGGAAGCTT  888
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  365  CTCTCAAGCTTGAGTTTGATTTCACAGAAGATACAGGAAACATAGAGGCCAGGAAAGCCCTTCCAAGGAAGCTT  438

Query  889  GGCAGGAAACTGGGTAGCACACTGACTCCCAAGATACAAAAAGATGGCATCAGTAAGTCAGCAGGTTTAGAACA  962
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  439  GGCAGGAAACTGGGTAGCACACTGACTCCCAAGATACAAAAAGATGGCATCAGTAAGTCAGCAGGTTTAGAACA  512

Query  963  GCCTACAGACCCAGTGGCACGAGACGGGCCTCTCTCCCAAACATCTTCCAAGCCAGATCCTAGTCAGTGGGAGA  1036
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|
Sbjct  513  GCCTACAGACCCAGTGGCACGAGACGGGCCTCTCTCCCAAACATCTTCCAAGCCAGATCCTAGTCAGTGGGAAA  586

Query 1037  GCCCCAGCTTCAACCCCTTTGGGAGCCACTCTGTTCTGCAGAACTCCCCACCCCTCTCTTCTGAGGGCTCCTAC  1110
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  587  GCCCCAGCTTCAACCCCTTTGGGAGCCACTCTGTTCTGCAGAACTCCCCACCCCTCTCTTCTGAGGGCTCCTAC  660

Query 1111  CACTTTGACCCAGATAACTTTGACGAATCCATGGATCACTTTAAACCAACTACGACCTTAACAAGCAGTGACTT  1184
            |||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||
Sbjct  661  CACTTTGACCCAGATAACTTTGACGAATCCATGGATCCCTTTAAACCAACTACGACCTTAACAAGCAGTGACTT  734

Query 1185  TTGTTCTCCCACTGGTAATCACGTTAATGAAATCTTAGAATCACCCAAGAAGGCAAAGTCGCGTTTAATAACGA  1258
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  735  TTGTTCTCCCACTGGTAATCACGTTAATGAAATCTTAGAATCACCCAAGAAGGCAAAGTCGCGTTTAATAACGA  808

Query 1259  GTGGCTGTAAGGTGAAGAAGCATGAAACTCAGTCTCTCGCCCTGGATGCATGTTCTCGGGATGAAGGGGCAGTG  1332
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  809  GTGGCTGTAAGGTGAAGAAGCATGAAACTCAGTCTCTCGCCCTGGATGCATGTTCTCGGGATGAAGGGGCAGTG  882

Query 1333  ATCTCCCAGATTTCAGACATTTCTAATAGGGATGGCCATGCTACTGATGAGGAGAAACTGGCATCCACGTCATG  1406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  883  ATCTCCCAGATTTCAGACATTTCTAATAGGGATGGCCATGCTACTGATGAGGAGAAACTGGCATCCACGTCATG  956

Query 1407  TGGTCAGAAATCAGCTGGTGCCGAGGTGAAAGGCATAGAGAAGGAGACGTGCCAGAAGATGGAAGAAGACGGGT  1480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  957  TGGTCAGAAATCAGCTGGTGCCGAGGTGAAAGGCATAGAGAAGGAGACGTGCCAGAAGATGGAAGAAGACGGGT  1030

Query 1481  CCACTGTGCTTGGGCTGCTGGAGTCCTCTGCAGAGAAGGCCCCTGTGTCGGTGTCCTGTGGAGGTGAGAGCCCC  1554
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1031  CCACTGTGCTTGGGCTGCTGGAGTCCTCTGCAGAGAAGGCCCCTGTGTCGGTGTCCTGTGGAGGTGAGAGCCCC  1104

Query 1555  CTGGATGGGATCTGCCTCAGCGAATCAGACAAGACAGCCGTGCTCACCTTAATAAGAGAAGAGATAATTACCAA  1628
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||
Sbjct 1105  CTGGATGGGATCTGCCTCAGCGAATCAGACAAGACAGCCGTGCTCACCTTAATAAGAGAAGAGATAATTACTAA  1178

Query 1629  AGAGATTGAAGCAAATGAATGGAAGAAGAAATACGAAGAGACCCGGCAAGAAGTTTTGGAGATGAGGAAAATTG  1702
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1179  AGAGATTGAAGCAAATGAATGGAAGAAGAAATACGAAGAGACCCGGCAAGAAGTTTTGGAGATGAGGAAAATTG  1252

Query 1703  TAGCTGAATATGAAAAGACTATTGCTCAAATGATTGAAGATGAACAAAGGACAAGTATGACCTCTCAGAAGAGC  1776
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1253  TAGCTGAATATGAAAAGACTATTGCTCAAATGATTGAAGATGAACAAAGGACAAGTATGACCTCTCAGAAGAGC  1326

Query 1777  TTCCAGCAACTGACCATGGAGAAGGAACAGGCCCTGGCTGACCTTAACTCTGTGGAAAGGTCCCTTTCTGATCT  1850
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1327  TTCCAGCAACTGACCATGGAGAAGGAACAGGCCCTGGCTGACCTTAACTCTGTGGAAAGGTCCCTTTCTGATCT  1400

Query 1851  CTTCAGGAGATATGAGAACCTGAAAGGTGTTCTGGAAGGGTTCAAGAAGAATGAAGAAGCCTTGAAGAAATGTG  1924
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1401  CTTCAGGAGATATGAGAACCTGAAAGGTGTTCTGGAAGGGTTCAAGAAGAATGAAGAAGCCTTGAAGAAATGTG  1474

Query 1925  CTCAGGATTACTTAGCCAGAGTTAAACAAGAGGAGCAGCGATACCAGGCCCTGAAAATCCACGCAGAAGAGAAA  1998
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1475  CTCAGGATTACTTAGCCAGAGTTAAACAAGAGGAGCAGCGATACCAGGCCCTGAAAATCCACGCAGAAGAGAAA  1548

Query 1999  CTGGACAAAGCCAATGAAGAGATTGCTCAGGTTCGAACAAAAGCAAAGGCTGAGAGTGCAGCTCTCCATGCTGG  2072
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1549  CTGGACAAAGCCAATGAAGAGATTGCTCAGGTTCGAACAAAAGCAAAGGCTGAGAGTGCAGCTCTCCATGCTGG  1622

Query 2073  ACTCCGCAAAGAGCAGATGAAGGTGGAGTCCCTGGAAAGGGCCCTGCAGCAGAAGAACCAAGAAATTGAAGAAC  2146
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1623  ACTCCGCAAAGAGCAGATGAAGGTGGAGTCCCTGGAAAGGGCCCTGCAGCAGAAGAACCAAGAAATTGAAGAAC  1696

Query 2147  TGACAAAAATCTGTGATGAGCTGATTGCAAAGCTGGGAAAGACTGAC  2193
            |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1697  TGACAAAAATCTGTGATGAGCTGATTGCAAAGCTGGGAAAGACTGAC  1743

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