Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_11249
Subject:
NM_001369604.1
Aligned Length:
1703
Identities:
1606
Gaps:
79

Alignment

Query    1  ATGGCTGAAGCGGCCACGGGCTTTCTGGAGCAGCTCAAGTCCTGCATAGTTTGGTCTTGGACGTATCTGTGGAC  74
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct    1  ATGGCTGAAGCGGCCACGGGCTTTCTGGAGCAGCTCAAGTCCTGCATAGTTTGGTCTTGGACGTATCTGTGGAC  74

Query   75  CGTGTGGTTCTTCATCGTGCTATTCCTGGTCTACATCCTGCGGGTGCCTTTGAAAATCAACGACAACTTGAGCA  148
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  CGTGTGGTTCTTCATCGTGCTATTCCTGGTCTACATCCTGCGGGTGCCTTTGAAAATCAACGACAACTTGAGCA  148

Query  149  CAGTGAGCATGTTTTTGAACACATTAACACCGAAGTTCTACGTGGCCCTAACAGGCACTTCCTCACTAATATCA  222
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  CAGTGAGCATGTTTTTGAACACATTAACACCGAAGTTCTACGTGGCCCTAACAGGCACTTCCTCACTAATATCA  222

Query  223  GGGCTTATTTTGATATTTGAATGGTGGTATTTTCGCAAATACGGAACTTCATTCATTGAACAAGTCTCAGTAAG  296
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  GGGCTTATTTTGATATTTGAATGGTGGTATTTTCGCAAATACGGAACTTCATTCATTGAACAAGTCTCAGTAAG  296

Query  297  CCACTTGCGCCCCCTTCTGGGAGGGGTTGACAACAACTCTTCCAACA---------------------ACTCAG  349
            |||||||||||||||||||||||||||||||||||||||||||||||                     ||||||
Sbjct  297  CCACTTGCGCCCCCTTCTGGGAGGGGTTGACAACAACTCTTCCAACAATTCTAATTCCAGTAACGGGGACTCAG  370

Query  350  ATTCCAATAGGCAAAGTGTCTCAGAATGCAAAGTATGGCGAAATCCACTAAATTTATTTAGGGGTGCTGAATAC  423
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  ATTCCAATAGGCAAAGTGTCTCAGAATGCAAAGTATGGCGAAATCCACTAAATTTATTTAGGGGTGCTGAATAC  444

Query  424  AATCGGTATACTTGGGTGACAGGACGAGAGCCTCTTACTTACTATGACATGAATCTCTCTGCCCAAGACCACCA  497
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  AATCGGTATACTTGGGTGACAGGACGAGAGCCTCTTACTTACTATGACATGAATCTCTCTGCCCAAGACCACCA  518

Query  498  GACATTCTTTACTTGTGACTCGGACCATCTGCGTCCCGCAGATGCAATAATGCAGAAAGCCTGGAGAGAGAGAA  571
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  GACATTCTTTACTTGTGACTCGGACCATCTGCGTCCCGCAGATGCAATAATGCAGAAAGCCTGGAGAGAGAGAA  592

Query  572  ACCCCCAAGCTAGGATTTCTGCAGCTCATGAAGCCTTGGAGATAAATGAGTGTGCAACTGCTTATATTCTCTTG  645
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  ACCCCCAAGCTAGGATTTCTGCAGCTCATGAAGCCTTGGAGATAAATGAGTGTGCAACTGCTTATATTCTCTTG  666

Query  646  GCTGAAGAGGAAGCAACAACCATTGCTGAAGCAGAAAAATTATTTAAGCAGGCCCTGAAGGCTGGAGATGGCTG  719
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  GCTGAAGAGGAAGCAACAACCATTGCTGAAGCAGAAAAATTATTTAAGCAGGCCCTGAAGGCTGGAGATGGCTG  740

Query  720  TTACCGACGCTCTCAGCAGCTACAACATCATGGATCCCAGTATGAAGCCCAACATAGACGAGACACCAATGTCT  793
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  TTACCGACGCTCTCAGCAGCTACAACATCATGGATCCCAGTATGAAGCCCAACATAGACGAGACACCAATGTCT  814

Query  794  TGGTGTACATCAAAAGAAGGCTAGCAATGTGTGCCAGAAGACTCGGGAGGACCAGGGAAGCAGTGAAAATGATG  867
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  TGGTGTACATCAAAAGAAGGCTAGCAATGTGTGCCAGAAGACTCGGGAGGACCAGGGAAGCAGTGAAAATGATG  888

Query  868  AGAGATTTAATGAAGGAGTTCCCCCTTCTGAGTATGTTCAATATCCATGAAAACCTTTTAGAAGCCCTTCTGGA  941
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  AGAGATTTAATGAAGGAGTTCCCCCTTCTGAGTATGTTCAATATCCATGAAAACCTTTTAGAAGCCCTTCTGGA  962

Query  942  ACTACAAGCATATGCTGATGTTCAGGCAGTCTTAGCAAAGTATGATGATATAAGCTTACCAAAGTCAGCAACAA  1015
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  ACTACAAGCATATGCTGATGTTCAGGCAGTCTTAGCAAAGTATGATGATATAAGCTTACCAAAGTCAGCAACAA  1036

Query 1016  TATGCTACACAGCTGCTTTGCTCAAAGCAAGAGCTGTCTCTGACAAATTCTCTCCTGAGGCTGCATCTCGGCGG  1089
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  TATGCTACACAGCTGCTTTGCTCAAAGCAAGAGCTGTCTCTGACAAATTCTCTCCTGAGGCTGCATCTCGGCGG  1110

Query 1090  GGGCTGAGCACAGCAGAGATGAATGCAGTAGAGGCCATTCATAGAGCTGTGGAATTCAATCCTCATGTGCCAAA  1163
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  GGGCTGAGCACAGCAGAGATGAATGCAGTAGAGGCCATTCATAGAGCTGTGGAATTCAATCCTCATGTGCCAAA  1184

Query 1164  ATACCTACTAGAAATGAAAAGCTTAATCCTACCCCCAGAACATATCCTGAAGAGAGGAGACAGTGAAGCAATAG  1237
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  ATACCTACTAGAAATGAAAAGCTTAATCCTACCCCCAGAACATATCCTGAAGAGAGGAGACAGTGAAGCAATAG  1258

Query 1238  CATATGCATTCTTTCATCTTGCACACTGGAAGAGAGTGGAAGGGGCTTTGAATCTTTTGCATTGTACGTGGGAA  1311
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  CATATGCATTCTTTCATCTTGCACACTGGAAGAGAGTGGAAGGGGCTTTGAATCTTTTGCATTGTACGTGGGAA  1332

Query 1312  GGCACTTTTCGGATGATCCCTTATCCCTTGGAAAAGGGGCACCTATTTTATCCTTACCCAATCTGTACAGAAAC  1385
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  GGCACTTTTCGGATGATCCCTTATCCCTTGGAAAAGGGGCACCTATTTTATCCTTACCCAATCTGTACAGAAAC  1406

Query 1386  AGCAGACCGAGAGCTGCTTCCATCTTTCCATGAAGTCTCAGTTTACCCAAAGAAGGAGCTTCCCTTCTTTATTC  1459
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  AGCAGACCGAGAGCTGCTTCCATCTTTCCATGAAGTCTCAGTTTACCCAAAGAAGGAGCTTCCCTTCTTTATTC  1480

Query 1460  TCTTTACTGCTGGATTATGTTCCTTCACAGCCATGCTGGCCCTCCTGACACATCAGTTCCCGGAACTTATGGGG  1533
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  TCTTTACTGCTGGATTATGTTCCTTCACAGCCATGCTGGCCCTCCTGACACATCAGTTCCCGGAACTTATGGGG  1554

Query 1534  GTCTTCGCAAAAGC------------TTTC--CTCAGC-----------ACTTTGTTTGCCCCCTTAA-ACT-T  1580
            ||||||||||||||            ||||  |||.||           |||....||||      || |.| |
Sbjct 1555  GTCTTCGCAAAAGCTATGATTGACATTTTCTGCTCGGCAGAGTTCAGGGACTGGAATTGC------AAGAGTAT  1622

Query 1581  TGTCATG---------GAGAAAGTGGAGAGCATCCTCC--CATC-CAGTCTGTGGCACCA--GCTAACACGGAT  1640
            |.|||||         ||..||.||||.|.|  |||||  ||.| ||.|||    ||.||  .|.||.||    
Sbjct 1623  TTTCATGCGTGTTGAAGATGAACTGGAAATC--CCTCCGGCACCTCAATCT----CAACATTTCCAAAAC----  1686

Query 1641  C  1641
             
Sbjct 1687  -  1686

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