Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_11249
Subject:
NM_001369607.1
Aligned Length:
1662
Identities:
1490
Gaps:
171

Alignment

Query    1  ATGGCTGAAGCGGCCACGGGCTTTCTGGAGCAGCTCAAGTCCTGCATAGTTTGGTCTTGGACGTATCTGTGGAC  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  CGTGTGGTTCTTCATCGTGCTATTCCTGGTCTACATCCTGCGGGTGCCTTTGAAAATCAACGACAACTTGAGCA  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  CAGTGAGCATGTTTTTGAACACATTAACACCGAAGTTCTACGTGGCCCTAACAGGCACTTCCTCACTAATATCA  222
              .|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct    1  --ATGAGCATGTTTTTGAACACATTAACACCGAAGTTCTACGTGGCCCTAACAGGCACTTCCTCACTAATATCA  72

Query  223  GGGCTTATTTTGATATTTGAATGGTGGTATTTTCGCAAATACGGAACTTCATTCATTGAACAAGTCTCAGTAAG  296
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   73  GGGCTTATTTTGATATTTGAATGGTGGTATTTTCGCAAATACGGAACTTCATTCATTGAACAAGTCTCAGTAAG  146

Query  297  CCACTTGCGCCCCCTTCTGGGAGGGGTTGACAACAACTCTTCCAACA---------------------ACTCAG  349
            |||||||||||||||||||||||||||||||||||||||||||||||                     ||||||
Sbjct  147  CCACTTGCGCCCCCTTCTGGGAGGGGTTGACAACAACTCTTCCAACAATTCTAATTCCAGTAACGGGGACTCAG  220

Query  350  ATTCCAATAGGCAAAGTGTCTCAGAATGCAAAGTATGGCGAAATCCACTAAATTTATTTAGGGGTGCTGAATAC  423
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  221  ATTCCAATAGGCAAAGTGTCTCAGAATGCAAAGTATGGCGAAATCCACTAAATTTATTTAGGGGTGCTGAATAC  294

Query  424  AATCGGTATACTTGGGTGACAGGACGAGAGCCTCTTACTTACTATGACATGAATCTCTCTGCCCAAGACCACCA  497
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  295  AATCGGTATACTTGGGTGACAGGACGAGAGCCTCTTACTTACTATGACATGAATCTCTCTGCCCAAGACCACCA  368

Query  498  GACATTCTTTACTTGTGACTCGGACCATCTGCGTCCCGCAGATGCAATAATGCAGAAAGCCTGGAGAGAGAGAA  571
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  369  GACATTCTTTACTTGTGACTCGGACCATCTGCGTCCCGCAGATGCAATAATGCAGAAAGCCTGGAGAGAGAGAA  442

Query  572  ACCCCCAAGCTAGGATTTCTGCAGCTCATGAAGCCTTGGAGATAAATGAGTGTGCAACTGCTTATATTCTCTTG  645
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  443  ACCCCCAAGCTAGGATTTCTGCAGCTCATGAAGCCTTGGAGATAAATGAGTGTGCAACTGCTTATATTCTCTTG  516

Query  646  GCTGAAGAGGAAGCAACAACCATTGCTGAAGCAGAAAAATTATTTAAGCAGGCCCTGAAGGCTGGAGATGGCTG  719
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  517  GCTGAAGAGGAAGCAACAACCATTGCTGAAGCAGAAAAATTATTTAAGCAGGCCCTGAAGGCTGGAGATGGCTG  590

Query  720  TTACCGACGCTCTCAGCAGCTACAACATCATGGATCCCAGTATGAAGCCCAACATAGACGAGACACCAATGTCT  793
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  591  TTACCGACGCTCTCAGCAGCTACAACATCATGGATCCCAGTATGAAGCCCAACATAGACGAGACACCAATGTCT  664

Query  794  TGGTGTACATCAAAAGAAGGCTAGCAATGTGTGCCAGAAGACTCGGGAGGACCAGGGAAGCAGTGAAAATGATG  867
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  665  TGGTGTACATCAAAAGAAGGCTAGCAATGTGTGCCAGAAGACTCGGGAGGACCAGGGAAGCAGTGAAAATGATG  738

Query  868  AGAGATTTAATGAAGGAGTTCCCCCTTCTGAGTATGTTCAATATCCATGAAAACCTTTTAGAAGCCCTTCTGGA  941
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  739  AGAGATTTAATGAAGGAGTTCCCCCTTCTGAGTATGTTCAATATCCATGAAAACCTTTTAGAAGCCCTTCTGGA  812

Query  942  ACTACAAGCATATGCTGATGTTCAGGCAGTCTTAGCAAAGTATGATGATATAAGCTTACCAAAGTCAGCAACAA  1015
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  813  ACTACAAGCATATGCTGATGTTCAGGCAGTCTTAGCAAAGTATGATGATATAAGCTTACCAAAGTCAGCAACAA  886

Query 1016  TATGCTACACAGCTGCTTTGCTCAAAGCAAGAGCTGTCTCTGACAAATTCTCTCCTGAGGCTGCATCTCGGCGG  1089
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  887  TATGCTACACAGCTGCTTTGCTCAAAGCAAGAGCTGTCTCTGACAAATTCTCTCCTGAGGCTGCATCTCGGCGG  960

Query 1090  GGGCTGAGCACAGCAGAGATGAATGCAGTAGAGGCCATTCATAGAGCTGTGGAATTCAATCCTCATGTGCCAAA  1163
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  961  GGGCTGAGCACAGCAGAGATGAATGCAGTAGAGGCCATTCATAGAGCTGTGGAATTCAATCCTCATGTGCCAAA  1034

Query 1164  ATACCTACTAGAAATGAAAAGCTTAATCCTACCCCCAGAACATATCCTGAAGAGAGGAGACAGTGAAGCAATAG  1237
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1035  ATACCTACTAGAAATGAAAAGCTTAATCCTACCCCCAGAACATATCCTGAAGAGAGGAGACAGTGAAGCAATAG  1108

Query 1238  CATATGCATTCTTTCATCTTGCACACTGGAAGAGAGTGGAAGGGGCTTTGAATCTTTTGCATTGTACGTGGGAA  1311
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1109  CATATGCATTCTTTCATCTTGCACACTGGAAGAGAGTGGAAGGGGCTTTGAATCTTTTGCATTGTACGTGGGAA  1182

Query 1312  GGCACTTTTCGGATGATCCCTTATCCCTTGGAAAAGGGGCACCTATTTTATCCTTACCCAATCTGTACAGAAAC  1385
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1183  GGCACTTTTCGGATGATCCCTTATCCCTTGGAAAAGGGGCACCTATTTTATCCTTACCCAATCTGTACAGAAAC  1256

Query 1386  AGCAGACCGAGAGCTGCTTCCATCTTTCCATGAAGTCTCAGTTTACCCAAAGAAGGAGCTTCCCTTCTTTATTC  1459
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257  AGCAGACCGAGAGCTGCTTCCATCTTTCCATGAAGTCTCAGTTTACCCAAAGAAGGAGCTTCCCTTCTTTATTC  1330

Query 1460  TCTTTACTGCTGGATTATGTTCCTTCACAGCCATGCTGGCCCTCCTGACACATCAGTTCCCGGAACTTATGGGG  1533
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1331  TCTTTACTGCTGGATTATGTTCCTTCACAGCCATGCTGGCCCTCCTGACACATCAGTTCCCGGAACTTATGGGG  1404

Query 1534  GTCTTCGCAAAAGCTTTCCTCAGCACTTTGTTTGCCCCCTTAAACTTTGTCATGGAGAAAGTGGAGAGCATCCT  1607
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1405  GTCTTCGCAAAAGCTTTCCTCAGCACTTTGTTTGCCCCCTTAAACTTTGTCATGGAGAAAGTGGAGAGCATCCT  1478

Query 1608  CCCATCCAGTCTGTGGCACCAGCTAACACGGATC  1641
            ||||||||||||||||||||||||||||||||||
Sbjct 1479  CCCATCCAGTCTGTGGCACCAGCTAACACGGATC  1512

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