Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_11249
Subject:
NR_161418.1
Aligned Length:
2456
Identities:
1605
Gaps:
821

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GTCTTACTGCTACAGCAGGGCTGGGGATTGCAGTATCCGCTGTTGCTGCTGCTCCCAGTCCTGCCCCTGCTGCT  74

Query    1  --------------------ATGGCTGAAGCGGCCACG--GGCTTTC----------TGG---------AGCAG  33
                                ||..|.||||.|| ||||  |||.|||          |||         |||||
Sbjct   75  ACCTAGTCCAGCCTCACCGCATCCCAGAAGAGG-CACGTCGGCCTTCATTTGCCTAGTGGATTTTCAAAAGCAG  147

Query   34  CTC-------------------AAG---TCCTGCAT-------------------------AGTTTG-------  53
            |||                   |||   .|.|||||                         ||.|.|       
Sbjct  148  CTCTTCGGTTTTTGGTGCTGTTAAGAGACCTTGCATTTCAATCACACCGGGAGAAAACTGAAGCTCGTAACAGG  221

Query   54  ---GTCT------TGGACGTATCTGTGGAC-----CGTGTGGTTCTTCAT----CGTGCTAT---TCCTGGTC-  105
               .|||      |||||..|.|| |||||     .||.|||  ||||||    |.||||.|   .||.|.|| 
Sbjct  222  AGAATCTGGCAGCTGGACACAGCT-TGGACTGCATTGTCTGG--CTTCATGACCCCTGCTGTGTAGCCGGCTCA  292

Query  106  ------------------TACA---TCCTGCGGGTGCC----------------------------------TT  124
                              ||||   |||| ||..|..|                                  ||
Sbjct  293  TCTCTTCACTCTCACATGTACACTCTCCT-CGCTTTTCTTTCTTTTTTTTTTCCCTTTTCTTTCTTCTAATTTT  365

Query  125  TGAAAATCAAC-------GACAAC-----TTGAGCA---------CAGTGAGCATGTTTTTGAACACATTAACA  177
            |.||||.||.|       |.||.|     ||| |||         ||.||||||||||||||||||||||||||
Sbjct  366  TAAAAAGCAGCCTCTGGAGCCAGCCATGTTTG-GCACTGAATCTTCATTGAGCATGTTTTTGAACACATTAACA  438

Query  178  CCGAAGTTCTACGTGGCCCTAACAGGCACTTCCTCACTAATATCAGGGCTTATTTTGATATTTGAATGGTGGTA  251
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  439  CCGAAGTTCTACGTGGCCCTAACAGGCACTTCCTCACTAATATCAGGGCTTATTTTGATATTTGAATGGTGGTA  512

Query  252  TTTTCGCAAATACGGAACTTCATTCATTGAACAAGTCTCAGTAAGCCACTTGCGCCCCCTTCTGGGAGGGGTTG  325
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  513  TTTTCGCAAATACGGAACTTCATTCATTGAACAAGTCTCAGTAAGCCACTTGCGCCCCCTTCTGGGAGGGGTTG  586

Query  326  ACAACAACTCTTCCAACA---------------------ACTCAGATTCCAATAGGCAAAGTGTCTCAGAATGC  378
            ||||||||||||||||||                     |||||||||||||||||||||||||||||||||||
Sbjct  587  ACAACAACTCTTCCAACAATTCTAATTCCAGTAACGGGGACTCAGATTCCAATAGGCAAAGTGTCTCAGAATGC  660

Query  379  AAAGTATGGCGAAATCCACTAAATTTATTTAGGGGTGCTGAATACAATCGGTATACTTGGGTGACAGGACGAGA  452
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  661  AAAGTATGGCGAAATCCACTAAATTTATTTAGGGGTGCTGAATACAATCGGTATACTTGGGTGACAGGACGAGA  734

Query  453  GCCTCTTACTTACTATGACATGAATCTCTCTGCCCAAGACCACCAGACATTCTTTACTTGTGACTCGGACCATC  526
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  735  GCCTCTTACTTACTATGACATGAATCTCTCTGCCCAAGACCACCAGACATTCTTTACTTGTGACTCGGACCATC  808

Query  527  TGCGTCCCGCAGATGCAATAATGCAGAAAGCCTGGAGAGAGAGAAACCCCCAAGCTAGGATTTCTGCAGCTCAT  600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  809  TGCGTCCCGCAGATGCAATAATGCAGAAAGCCTGGAGAGAGAGAAACCCCCAAGCTAGGATTTCTGCAGCTCAT  882

Query  601  GAAGCCTTGGAGATAAATG-------------------------------------------------------  619
            |||||||||||||||||||                                                       
Sbjct  883  GAAGCCTTGGAGATAAATGAAATTAGGTCCAGAGTTGAAGTTCCCCTAATTGCTTCCTCTACCATCTGGGAGAT  956

Query  620  --------------AGTGTGCAACTGCTTATATTCTCTTGGCTGAAGAGGAAGCAACAACCATTGCTGAAGCAG  679
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  957  AAAATTGTTACCAAAGTGTGCAACTGCTTATATTCTCTTGGCTGAAGAGGAAGCAACAACCATTGCTGAAGCAG  1030

Query  680  AAAAATTATTTAAGCAGGCCCTGAAGGCTGGAGATGGCTGTTACCGACGCTCTCAGCAGCTACAACATCATGGA  753
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1031  AAAAATTATTTAAGCAGGCCCTGAAGGCTGGAGATGGCTGTTACCGACGCTCTCAGCAGCTACAACATCATGGA  1104

Query  754  TCCCAGTATGAAGCCCAACATAGACGAGACACCAATGTCTTGGTGTACATCAAAAGAAGGCTAGCAATGTGTGC  827
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1105  TCCCAGTATGAAGCCCAACATAGACGAGACACCAATGTCTTGGTGTACATCAAAAGAAGGCTAGCAATGTGTGC  1178

Query  828  CAGAAGACTCGGGAGGACCAGGGAAGCAGTGAAAATGATGAGAGATTTAATGAAGGAGTTCCCCCTTCTGAGTA  901
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1179  CAGAAGACTCGGGAGGACCAGGGAAGCAGTGAAAATGATGAGAGATTTAATGAAGGAGTTCCCCCTTCTGAGTA  1252

Query  902  TGTTCAATATCCATGAAAACCTTTTAGAAGCCCTTCTGGAACTACAAGCATATGCTGATGTTCAGGCAGTCTTA  975
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1253  TGTTCAATATCCATGAAAACCTTTTAGAAGCCCTTCTGGAACTACAAGCATATGCTGATGTTCAGGCAGTCTTA  1326

Query  976  GCAAAGTATGATGATATAAGCTTACCAAAGTCAGCAACAATATGCTACACAGCTGCTTTGCTCAAAGCAAGAGC  1049
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1327  GCAAAGTATGATGATATAAGCTTACCAAAGTCAGCAACAATATGCTACACAGCTGCTTTGCTCAAAGCAAGAGC  1400

Query 1050  TGTCTCTGACAA--------------------------------------------------------------  1061
            ||||||||||||                                                              
Sbjct 1401  TGTCTCTGACAAATCGCCAGTACCTACTGCAACATCTTTTCTCCCTACACAGCGACTCCAGCTTGGGAGGGCAG  1474

Query 1062  --------------------------------------------------------------------------  1061
                                                                                      
Sbjct 1475  GGCCAGGGTTGTCACAGCTTCCCCTGTGGTGTCTGCCTGCCAAGCACAGCTCTGGAGTTAGCCCTGGGTGTGAG  1548

Query 1062  ATTCTCTCCTGAGGCTGCATCTCGGCGGGGGCTGAGCACAGCAGAGATGAATGCAGTAGAGGCCATTCATAGAG  1135
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1549  ATTCTCTCCTGAGGCTGCATCTCGGCGGGGGCTGAGCACAGCAGAGATGAATGCAGTAGAGGCCATTCATAGAG  1622

Query 1136  CTGTGGAATTCAATCCTCATGTGCCAAAATACCTACTAGAAATGAAAAGCTTAATCCTACCCCCAGAACATATC  1209
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1623  CTGTGGAATTCAATCCTCATGTGCCAAAATACCTACTAGAAATGAAAAGCTTAATCCTACCCCCAGAACATATC  1696

Query 1210  CTGAAGAGAGGAGACAGTGAAGCAATAGCATATGCATTCTTTCATCTTGCACACTGGAAGAGAGTGGAAGGGGC  1283
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1697  CTGAAGAGAGGAGACAGTGAAGCAATAGCATATGCATTCTTTCATCTTGCACACTGGAAGAGAGTGGAAGGGGC  1770

Query 1284  TTTGAATCTTTTGCATTGTACGTGGGAAGGCACTTTTCGGATGATCCCTTATCCCTTGGAAAAGGGGCACCTAT  1357
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1771  TTTGAATCTTTTGCATTGTACGTGGGAAGGCACTTTTCGGATGATCCCTTATCCCTTGGAAAAGGGGCACCTAT  1844

Query 1358  TTTATCCTTACCCAATCTGTACAGAAACAGCAGACCGAGAGCTGCTTCCATCTTTCCATGAAGTCTCAGTTTAC  1431
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1845  TTTATCCTTACCCAATCTGTACAGAAACAGCAGACCGAGAGCTGCTTCCATCTTTCCATGAAGTCTCAGTTTAC  1918

Query 1432  CCAAAGAAGGAGCTTCCCTTCTTTATTCTCTTTACTGCTGGATTATGTTCCTTCACAGCCATGCTGGCCCTCCT  1505
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1919  CCAAAGAAGGAGCTTCCCTTCTTTATTCTCTTTACTGCTGGATTATGTTCCTTCACAGCCATGCTGGCCCTCCT  1992

Query 1506  GACACATCAGTTCCCGGAACTTATGGGGGTCTTCGCAAAAGCTTTCCTCAGCACTTTGTTTGCCCCCTTAAACT  1579
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1993  GACACATCAGTTCCCGGAACTTATGGGGGTCTTCGCAAAAGCTTTCCTCAGCACTTTGTTTGCCCCCTTAAACT  2066

Query 1580  TTGTCATGGAGAAAGTGGAGAGCATCCTCCCATCCAGTCTGTGGCACCAGCTAACACGGATC------------  1641
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            
Sbjct 2067  TTGTCATGGAGAAAGTGGAGAGCATCCTCCCATCCAGTCTGTGGCACCAGCTAACACGGATCTGAGAGAAGCCC  2140

Query 1642  --------------------------------------------------------------------------  1641
                                                                                      
Sbjct 2141  TGTCCTCCACTCACCTCACCCGCCGCTGCCACCATCTCCTCTGTGCCAACTCCTTGTGGACCGCAAGAAAGCAT  2214

Query 1642  --------------------------------------------------------------------------  1641
                                                                                      
Sbjct 2215  GACTTTGAAAAAGGGAAGCCATTCCGAGATTTTAAAATGTTCATGGACTATTCCATATTAAAAGCTGTTTTTGT  2288

Query 1642  --------------------------------------------------------------------------  1641
                                                                                      
Sbjct 2289  TGTACAAAATTCACTGATGTTCAGTTCTATTTTATTTTGCCTTCAGAAAAGAAGAAAGTCAAAAATAAAACTTT  2362

Query 1642  --------------------------------------------------------------------------  1641
                                                                                      
Sbjct 2363  TGTGTATTACAGCAATCATTTGTATCCTCCTGTGTCTTCCAACCCTAAAATTGTTGATGTCCCAAATAAACCTT  2436

Query 1642  --------------  1641
                          
Sbjct 2437  TGGATTTACCTTGA  2450

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