Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_11447
- Subject:
- XR_001748535.1
- Aligned Length:
- 5773
- Identities:
- 153
- Gaps:
- 5620
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GCACGGCCGGTTCCTCTTTACATAACGGCGCGGGGCGGCATGGGCCCGGGCCACCGCCTCCGCCCGGCTGCCCG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CCCGGACTGTCGCGGCCCGCGGTGGCGACGGCGGCCGCTGCAAAGTTTCCCCGGCGGCGGCGGCCCGGGGGCGC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 ATCCTCCCGCAACTGTCAAGCGCTGGCGGCGGAAATGATGAGGCGCTGGCCATTTTCCGAGCCCGGGTTTCCTG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CCTGAGCCCCGCTCGAGCGAGCCGCGAGCGAGGAGCCGGCGGGCGGGAGAGGACGCGCCCAGGGCGGGGGCCCG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CCCGCCCCCTCGGGATTTCGAGGGCCCGGGGGCGCGCGACGCCATGGGCCGGCCGGGCCCAGAGCTCCTGTCTC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TCAGCCCGGCCGCACCACCTGGGTCTCCGCCATGAACGGGCCTGCCCTGCAGCCCTCCTCGCCCTCTTCCGCGC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CCTCAGCCTCCCCGGCGGCGGCCCCGCGGGGCTGGAGCGAGTTCTGTGAGTTGCACGCCGTAGCGGCGGCCCGG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GAGCTGGCCCGCCAGTACTGGCTGTTCGCCCGGGAGCATCCGCAGCACGCGCCGCTGCGCGCCGAGCTGGTGTC 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GCTGCAGTTCACCGACCTCTTCCAGCGCTACTTCTGCCGCGAGGTGCGCGACGGACGGGCGCCGGGCCGCGACT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 ACCGGGACACAGGCCGTGGGCCCCCAGCCAAGGCCGAGGCGTCCCCGGAGCCAGGCCCCGGCCCCGCCGCCCCT 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GGCCTGCCCAAGGCCCGCAGCTCTGAGGAGCTGGCCCCGCCGCGGCCGCCCGGGCCCTGCTCCTTCCAGCACTT 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 TCGCCGCAGCCTCCGCCACATCTTCCGCCGCCGCTCGGCCGGGGAGCTGCCAGCGGCCCACACCGCTGCCGCCC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 CCGGGACCCCCGGAGAGGCTGCTGAGACCCCCGCCCGGCCTGGCCTGGCCAAGAAGTTCCTGCCCTGGAGCCTG 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 GCCCGGGAGCCGCCACCCGAGGCGCTGAAGGAGGCGGTGCTGCGCTACAGCCTGGCCGACGAGGCCTCCATGGA 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 CAGCGGGGCACGCTGGCAGCGCGGGAGGCTGGCGCTGCGCCGGGCCCCGGGCCCCGATGGCCCCGACCGCGTGC 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 TGGAGCTCTTCGACCCACCCAAGTGGCCAGAGCCTGAGCTGTCCAGGCTGAGGTTTCGACTGAAGCAGGGGTTG 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 TCCTGCGCCCATGTGCCCACACGCTGCAACCTGGCTGGAGCCTCTGGCATAGGACACCCATACCACCAGTCTTA 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TCACAAGAGGAAGGGGAGGGGCAAACCCCCTCCTGAGCAGATTCCCAACCGGAAGCAGCTGGCTCCTTGGCTGC 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 AGAGTGCCCCAGCACAGGAAGCATCTGCAGGGGGGACTCCTGGGGAGACTATAGACAAACTCAGGCCTGGCTGG 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 AAGAAAGAGCATCAGGAACAAGCCTTGAGTACCCCAACTTGGTCTCGTAGAGTTCAAGGCCCAAGCTACAAGCA 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 GCTTGCTCCAGCATCCAGGAGGTCCGGTGGTGCACACGGCTTGAGATGCCTGACAACCTTTACACCTTTGTGCT 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 GAAGGTGAAGGACCGGACAGACATCATCTTTGAGGTGGGAGACGAGCAGCAGCTGAATTCATGGATGGCTGAGC 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 TCTCGGAGTGCACAGGCCGAGGGCTGGAGAGCACAGAAGCAGAGATGCATATTCCCTCAGCCCTAGAGCCTAGC 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 ACGTCCAGCTCCCCAAGGGGCAGCACAGATTCCCTTAACCAAGGTGCTTCTCCTGGGGGGCTGCTGGACCCGGC 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 CTGCCAGAAGACGGACCATTTCCTGTCCTGCTACCCCTGGTTCCACGGCCCCATCTCCAGAGTGAAAGCAGCTC 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 AGCTGGTTCAGCTGCAGGGCCCTGATGCTCATGGAGTGTTCCTGGTGCGGCAGAGCGAGACGCGGCGTGGGGAA 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 TACGTGCTCACTTTCAACTTTCAGGGGATAGCCAAGCACCTGCGCCTGTCGCTGACAGAGCGGGGCCAGTGCCG 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 TGTGCAGCACCTCCACTTTCCCTCGGTCGTGGACATGCTCCACCACTTCCAGCGCTCGCCCATCCCACTCGAGT 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 GCGGCGCCGCCTGTGATGTCCGGCTCTCCAGCTACGTGGTAGTCGTCTCCCAACCACCAGGTTCCTGCAACACG 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 GTCCTCTTCCCTTTCTCCCTTCCTCACTGGGATTCAGAGTCCCTTCCTCACTGGGGTTCAGAGTTGGGCCTTCC 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 CCACCTTAGTTCTTCTGGCTGTCCCCGGGGGCTCAGCCCAGAGGGTCTCCCAGGGCGATCCTCACCCCCCGAGC 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 AGATCTTCCACCTGGTGCCTTCGCCCGAAGAACTGGCCAACAGCCTGCAGCACCTGGAGCATGAGCCTGTGAAT 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 CGAGCCCGGGACTCGGACTACGAAATGGACTCATCCTCCCGGAGCCACCTGCGGGCCATAGACAATCAGTACAC 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 ACCTCTCTGACCAGTGAGGAATTCCAGGCCTCAACAGCTGCCCTTGAGGAGCACAGGCAGAAGTGTGAACTTGT 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 GAATGTAATTGATCTTTCCTTCCTTCCAGAGAAAGATTTAAGGGACACTGTTAACTGCTCGTGCCAGTTTGGAA 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 GTGACCCTTCTATTAGGCCTGTTGAAGGGCCCTCCTGTAGGTTTCATCTATCCACCTGGCTTTCTCCTTATTGT 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 TTACAGATGTAGTTCTTGTTAGAGGATGCCGCTAGCTCCTGCCCGGGGTCCCTATGCCCAGTCCCCGTTACTCT 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 TAGAGAAAGGAGTTGGGGTGAGGGCCAGAGCTGGCAGTGGAAACTTGTTCTCTTTTTCACTGACACTGTCACAG 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 CGGATGACAGACTTTCTACGGGGAGGAGGGGGGGATCATCAGGAAGCCCAGAACACTAACAAGCGGTTCTCCCA 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 TCTACCGTCAGTCCACATGGCAGGTCTGCTGTGTCCACACCACAGATGACCACATCTAATCCTGCTTCTACTCT 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 CAGCTTTAGGACAAAAGCTCTGTCAGAGGCACAAGCTGAAGGTCAAAAATGATTTAAAACATTTTACCTCAGAC 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 TAATTTCTTTAAAGGATTCAGGTTCAAAACTTAACCACTGCTTATTTCAGTGCACTGTTTCAACTAACACCCAT 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 GCTATTTTTGTAGTCAGAAACAGCTATGCAAACCCTACCTAATTTACAGTCTGAGCCAGCATGCTGGCTTGTCT 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 ACTGCATCCTCGGGACAGTCACCTGCCACTGAGTGGCCACTGTCCTTCCTAAATGTCAAGAAGTGAAGTATGTC 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 ACCCTTTCAGGGAAATTCAGGCAATTACTGAAATAGGAGGGTGGCAAGAACAGTTCTATCCTGGTGCCTTACGA 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 ATAAAAAACTGGATTCTGGTTTACAGCAGCTTTACAGTGATAGTTAAATTAACTGGGGCTAGGGGAAGAGCAAG 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 CAAAAAGGGAAGAAGGACTCCTAGGCCCTTTCTAGTAAATCCTTCAGCAACAAGGCTGGCTTGGTGCCCTCCAA 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 GCATCTAATGGCTTATTAAATTATCCCACAAGTGGGTTTTAGGCTCCTTTTTTGAGCCAAAATGGAAGCTGGGA 3552
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3553 ATCTGGTGCCATAACTAATGAGAAACTCCTTTAATAGCCCACAATCAGTGTTCTGTTCTAGCTGGCTACTGCTT 3626
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3627 CACTGGATTGAGAATCTATCTATCTCCTTGCACACATGGGCACACACAATCTCCACCATCCAGGGAGGTCCTGA 3700
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3701 AGTCAAATCTCTATCTATACAAGTGATACAATTCATAGGGGGCTGGCTCCTCCCAGAACCTGTCTGGAGGCTCA 3774
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3775 GAAACGGGGGCAGTGACAGTGGAGTCAGCTGCTCTTGGGTGCCAGCAGAGCCATTCAGTACAACCCCCAGGCTC 3848
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3849 ACAGCAGTGGCTTCTAGGAAACTGGGAGTTTAGATCAGCTTTACAGATACATCGATCAGAGGCTAAAATGAAAC 3922
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3923 CTCAGCCTAAAACTCATAGGACTGACTGCCTGGGAGGAGGGTTAGGTCTGCTTCTTCCACTTATACTTAGTCTC 3996
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3997 TGTGCTCCAAGAGGTCAAATTTTTGCTTCTAGAATTTCCTTGGGGTCTTTCAGAGGGTGGGGGAACAAACCCCT 4070
Query 1 ----------------------------ATGGAGTTTCTCTTGTCAACCGGGCTGGAGTGCAGTGGTGCAATCT 46
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4071 ATGCACTTTTCTTTTTTTTTTTTTTGAGATGGAGTTTCTCTTGTCAACCGGGCTGGAGTGCAGTGGTGCAATCT 4144
Query 47 TGGCTCACTGCAACCTCCACCTTCCTGGTTCAAGCGATTCTGCCTCGACCTCTCAAGTAGCTGGGATTACAAGC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4145 TGGCTCACTGCAACCTCCACCTTCCTGGTTCAAGCGATTCTGCCTCGACCTCTCAAGTAGCTGGGATTACAAGC 4218
Query 121 ACCAGCCACCATGCCTGGCTAATTTTGTATTTT----------------------------------------- 153
|||||||||||||||||||||||||||||||||
Sbjct 4219 ACCAGCCACCATGCCTGGCTAATTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGTTGGCCAGGCTGGTCTC 4292
Query 154 -------------------------------------------------------------------------- 153
Sbjct 4293 GAATGTCTGACCTCAGGTGATCCACCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGCGAGCCACCGCGC 4366
Query 154 -------------------------------------------------------------------------- 153
Sbjct 4367 CCAGCCTACACCACTTTTAGTACCAACACTCTTGGGTGATTTCATGGACCCTAAAGCAGACCTGACACTGATCC 4440
Query 154 -------------------------------------------------------------------------- 153
Sbjct 4441 AGATTTGCAGTCCATTTTTAAGGACACCTGTCTTTATTTCCTCAAAGTCAAGCAGCTTTCTCTGGAAAATGAAT 4514
Query 154 -------------------------------------------------------------------------- 153
Sbjct 4515 GCTAATTAGTGTGAACCAAAAGAGTAAGTAAGAGTCTGAAGTTTTTTTAAAGGAGAAAGCTTATTATGGAAAGT 4588
Query 154 -------------------------------------------------------------------------- 153
Sbjct 4589 CACTGGTCCTCCCCTCCGCACAGGAAAGGTACCCAGTAGATAATGAACCAAATTAAGTTCCCTCCCTCCAGCCA 4662
Query 154 -------------------------------------------------------------------------- 153
Sbjct 4663 GAAGTTAAACATCTGGGATATGACGTCTTCATGCCAGGGGCACTCATTTCTTAGCAGCCTCTCTACATACATCT 4736
Query 154 -------------------------------------------------------------------------- 153
Sbjct 4737 CTCAGGTGGTGCCAAGAGGCACACCAGGTAGAGCAAACTTAGCAGCTCTGACTAACAGGCTGCAAAGTGCAAGT 4810
Query 154 -------------------------------------------------------------------------- 153
Sbjct 4811 TCAGATTCTGTGGCAGAGATTTGGAAGGCACCCACCTCCAGACTGCTTCCCGTCCAAGTTACCAGGACAGCTCA 4884
Query 154 -------------------------------------------------------------------------- 153
Sbjct 4885 AAAACATGCTGACAGAAAACTCCCATGGCTCTAGGAAGAAGTGACACTAAGCCAACACCTTTCTTTATGTGGGA 4958
Query 154 -------------------------------------------------------------------------- 153
Sbjct 4959 GCAGAATCAGCTGATGAAGGGGTGGGCAGCAGTGTGGGGCAGGCACCCCACTGGCTGCAGCTAGCCCACCATAG 5032
Query 154 -------------------------------------------------------------------------- 153
Sbjct 5033 GCACAGCACATCCCACCACTCTCCTTCCAGTCCTGACCAGGCCCCAGCCGGCAACTTCTACCGAGAGCCATGGC 5106
Query 154 -------------------------------------------------------------------------- 153
Sbjct 5107 TCAACACCAAACTGGACAGTAGACATCATGATCCCTCCAGTTAGCTCTAATTACAGACCCCACCAGTACAGCTT 5180
Query 154 -------------------------------------------------------------------------- 153
Sbjct 5181 GACAGCTCCCGGCACCATCCCTTCCTTCATCTGACTTATTGAACTTTTACAAACTAACAGTCACCAGCACCAAA 5254
Query 154 -------------------------------------------------------------------------- 153
Sbjct 5255 GAATTAAGTCAACTAACCTGCCTTGAATTTTAGACCAGCAATCCATATGGCTTTATCTGGTATAAATCTTCTGC 5328
Query 154 -------------------------------------------------------------------------- 153
Sbjct 5329 CTTTGATCATTTCTGGACCGTAGGAAAAAGGAATAGCAATCATTAAAATCTTGGGCCAGAGAACACTATTTTTA 5402
Query 154 -------------------------------------------------------------------------- 153
Sbjct 5403 CATAACAGTTTCTTAACCTAAAGTCAAGGCCTTGGACTCTTCCCTGAGGGTTGCCTGAGATTCCTTCATGCTTT 5476
Query 154 -------------------------------------------------------------------------- 153
Sbjct 5477 CTATTCAGGACTAAGTCCCTTACTGCAAATGTGTTAGCTCTAACATCTCCCACAAGCTAGAGGAACTTGCGAGT 5550
Query 154 -------------------------------------------------------------------------- 153
Sbjct 5551 ATATTAACAAGGACACATCTGACATCCTGTGTTTGGTTAGAATATACAGCACATTGTGATAACATAAAGTGGAT 5624
Query 154 -------------------------------------------------------------------------- 153
Sbjct 5625 TCATCTTGTATCATTATAGGCAGAAGGTATTTGGCAAATTTTTATGTATTGTTTTATGTACTGTACAAGTAACT 5698
Query 154 -------------------------------------------------------------------------- 153
Sbjct 5699 TATTCTTGAATAATGCAAATTTTGCTATAATGTACAAATTGCTATATGTGAATTAAAAAGTTTTCAGAATCTTG 5772
Query 154 - 153
Sbjct 5773 A 5773
