Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_11447
Subject:
XR_002957278.1
Aligned Length:
5649
Identities:
153
Gaps:
5496

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GGCCGGTTCCTCTTTACATAACGGCGCGGGGCGGCATGGGCCCGGGCCACCGCCTCCGCCCGGCTGCCCGCCCG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GACTGTCGCGGCCCGCGGTGGCGACGGCGGCCGCTGCAAAGTTTCCCCGGCGGCGGCGGCCCGGGGGCGCATCC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  TCCCGCAACTGTCAAGCGCTGGCGGCGGAAATGATGAGGCGCTGGCCATTTTCCGAGCCCGGGTTTCCTGCCTG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  AGCCCCGCTCGAGCGAGCCGCGAGCGAGGAGCCGGCGGGCGGGAGAGGACGCGCCCAGGGCGGGGGCCCGCCCG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CCCCCTCGGGATTTCGAGGGCCCGGGGGCGCGCGACGCCATGGGCCGGCCGGGCCCAGAGCTCCTGTCTCTCAG  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CCCGGCCGCACCACCTGGGTCTCCGCCATGAACGGGCCTGCCCTGCAGCCCTCCTCGCCCTCTTCCGCGCCCTC  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  AGCCTCCCCGGCGGCGGCCCCGCGGGGCTGGAGCGAGTTCTGTGAGTTGCACGCCGTAGCGGCGGCCCGGGAGC  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  TGGCCCGCCAGTACTGGCTGTTCGCCCGGGAGCATCCGCAGCACGCGCCGCTGCGCGCCGAGCTGGTGTCGCTG  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  CAGTTCACCGACCTCTTCCAGCGCTACTTCTGCCGCGAGGTGCGCGACGGACGGGCGCCGGGCCGCGACTACCG  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  GGACACAGGCCGTGGGCCCCCAGCCAAGGCCGAGGCGTCCCCGGAGCCAGGCCCCGGCCCCGCCGCCCCTGGCC  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  TGCCCAAGGCCCGCAGCTCTGAGGAGCTGGCCCCGCCGCGGCCGCCCGGGCCCTGCTCCTTCCAGCACTTTCGC  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  CGCAGCCTCCGCCACATCTTCCGCCGCCGCTCGGCCGGGGAGCTGCCAGCGGCCCACACCGCTGCCGCCCCCGG  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  GACCCCCGGAGAGGCTGCTGAGACCCCCGCCCGGCCTGGCCTGGCCAAGAAGTTCCTGCCCTGGAGCCTGGCCC  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  GGGAGCCGCCACCCGAGGCGCTGAAGGAGGCGGTGCTGCGCTACAGCCTGGCCGACGAGGCCTCCATGGACAGC  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  GGGGCACGCTGGCAGCGCGGGAGGCTGGCGCTGCGCCGGGCCCCGGGCCCCGATGGCCCCGACCGCGTGCTGGA  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  GCTCTTCGACCCACCCAAGTCTTATCACAAGAGGAAGGGGAGGGGCAAACCCCCTCCTGAGCAGATTCCCAACC  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  GGAAGCAGCTGGCTCCTTGGCTGCAGAGTGCCCCAGCACAGGAAGCATCTGCAGGGGGGACTCCTGGGGAGACT  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  ATAGACAAACTCAGGCCTGGCTGGAAGAAAGAGCATCAGGAACAAGCCTTGAGTACCCCAACTTGGTCTCGTAG  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  AGTTCAAGGCCCAAGCTACAAGCAGCTTGCTCCAGCATCCAGGAGGTCCGGTGGTGCACACGGCTTGAGATGCC  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  TGACAACCTTTACACCTTTGTGCTGAAGGTGAAGGACCGGACAGACATCATCTTTGAGGTGGGAGACGAGCAGC  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  AGCTGAATTCATGGATGGCTGAGCTCTCGGAGTGCACAGGCCGAGGGCTGGAGAGCACAGAAGCAGAGATGCAT  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  ATTCCCTCAGCCCTAGAGCCTAGCACGTCCAGCTCCCCAAGGGGCAGCACAGATTCCCTTAACCAAGGTGCTTC  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  TCCTGGGGGGCTGCTGGACCCGGCCTGCCAGAAGACGGACCATTTCCTGTCCTGCTACCCCTGGTTCCACGGCC  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  CCATCTCCAGAGTGAAAGCAGCTCAGCTGGTTCAGCTGCAGGGCCCTGATGCTCATGGAGTGTTCCTGGTGCGG  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  CAGAGCGAGACGCGGCGTGGGGAATACGTGCTCACTTTCAACTTTCAGGGGATAGCCAAGCACCTGCGCCTGTC  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  GCTGACAGAGCGGGGCCAGTGCCGTGTGCAGCACCTCCACTTTCCCTCGGTCGTGGACATGCTCCACCACTTCC  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  AGCGCTCGCCCATCCCACTCGAGTGCGGCGCCGCCTGTGATGTCCGGCTCTCCAGCTACGTGGTAGTCGTCTCC  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  CAACCACCAGGTTCCTGCAACACGGTCCTCTTCCCTTTCTCCCTTCCTCACTGGGATTCAGAGTCCCTTCCTCA  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  CTGGGGTTCAGAGTTGGGCCTTCCCCACCTTAGTTCTTCTGGCTGTCCCCGGGGGCTCAGCCCAGAGGGTCTCC  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  CAGGGCGATCCTCACCCCCCGAGCAGATCTTCCACCTGGTGCCTTCGCCCGAAGAACTGGCCAACAGCCTGCAG  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  CACCTGGAGCATGAGCCTGTGAATCGAGCCCGGGACTCGGACTACGAAATGGACTCATCCTCCCGGAGCCACCT  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  GCGGGCCATAGACAATCAGTACACACCTCTCTGACCAGTGAGGAATTCCAGGCCTCAACAGCTGCCCTTGAGGA  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  GCACAGGCAGAAGTGTGAACTTGTGAATGTAATTGATCTTTCCTTCCTTCCAGAGAAAGATTTAAGGGACACTG  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  TTAACTGCTCGTGCCAGTTTGGAAGTGACCCTTCTATTAGGCCTGTTGAAGGGCCCTCCTGTAGGTTTCATCTA  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  TCCACCTGGCTTTCTCCTTATTGTTTACAGATGTAGTTCTTGTTAGAGGATGCCGCTAGCTCCTGCCCGGGGTC  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  CCTATGCCCAGTCCCCGTTACTCTTAGAGAAAGGAGTTGGGGTGAGGGCCAGAGCTGGCAGTGGAAACTTGTTC  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  TCTTTTTCACTGACACTGTCACAGCGGATGACAGACTTTCTACGGGGAGGAGGGGGGGATCATCAGGAAGCCCA  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  GAACACTAACAAGCGGTTCTCCCATCTACCGTCAGTCCACATGGCAGGTCTGCTGTGTCCACACCACAGATGAC  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  CACATCTAATCCTGCTTCTACTCTCAGCTTTAGGACAAAAGCTCTGTCAGAGGCACAAGCTGAAGGTCAAAAAT  2886

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2887  GATTTAAAACATTTTACCTCAGACTAATTTCTTTAAAGGATTCAGGTTCAAAACTTAACCACTGCTTATTTCAG  2960

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2961  TGCACTGTTTCAACTAACACCCATGCTATTTTTGTAGTCAGAAACAGCTATGCAAACCCTACCTAATTTACAGT  3034

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3035  CTGAGCCAGCATGCTGGCTTGTCTACTGCATCCTCGGGACAGTCACCTGCCACTGAGTGGCCACTGTCCTTCCT  3108

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3109  AAATGTCAAGAAGTGAAGTATGTCACCCTTTCAGGGAAATTCAGGCAATTACTGAAATAGGAGGGTGGCAAGAA  3182

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3183  CAGTTCTATCCTGGTGCCTTACGAATAAAAAACTGGATTCTGGTTTACAGCAGCTTTACAGTGATAGTTAAATT  3256

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3257  AACTGGGGCTAGGGGAAGAGCAAGCAAAAAGGGAAGAAGGACTCCTAGGCCCTTTCTAGTAAATCCTTCAGCAA  3330

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3331  CAAGGCTGGCTTGGTGCCCTCCAAGCATCTAATGGCTTATTAAATTATCCCACAAGTGGGTTTTAGGCTCCTTT  3404

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3405  TTTGAGCCAAAATGGAAGCTGGGAATCTGGTGCCATAACTAATGAGAAACTCCTTTAATAGCCCACAATCAGTG  3478

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3479  TTCTGTTCTAGCTGGCTACTGCTTCACTGGATTGAGAATCTATCTATCTCCTTGCACACATGGGCACACACAAT  3552

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3553  CTCCACCATCCAGGGAGGTCCTGAAGTCAAATCTCTATCTATACAAGTGATACAATTCATAGGGGGCTGGCTCC  3626

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3627  TCCCAGAACCTGTCTGGAGGCTCAGAAACGGGGGCAGTGACAGTGGAGTCAGCTGCTCTTGGGTGCCAGCAGAG  3700

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3701  CCATTCAGTACAACCCCCAGGCTCACAGCAGTGGCTTCTAGGAAACTGGGAGTTTAGATCAGCTTTACAGATAC  3774

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3775  ATCGATCAGAGGCTAAAATGAAACCTCAGCCTAAAACTCATAGGACTGACTGCCTGGGAGGAGGGTTAGGTCTG  3848

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3849  CTTCTTCCACTTATACTTAGTCTCTGTGCTCCAAGAGGTCAAATTTTTGCTTCTAGAATTTCCTTGGGGTCTTT  3922

Query    1  ----------------------------------------------------ATGGAGTTTCTCTTGTCAACCG  22
                                                                ||||||||||||||||||||||
Sbjct 3923  CAGAGGGTGGGGGAACAAACCCCTATGCACTTTTCTTTTTTTTTTTTTTGAGATGGAGTTTCTCTTGTCAACCG  3996

Query   23  GGCTGGAGTGCAGTGGTGCAATCTTGGCTCACTGCAACCTCCACCTTCCTGGTTCAAGCGATTCTGCCTCGACC  96
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3997  GGCTGGAGTGCAGTGGTGCAATCTTGGCTCACTGCAACCTCCACCTTCCTGGTTCAAGCGATTCTGCCTCGACC  4070

Query   97  TCTCAAGTAGCTGGGATTACAAGCACCAGCCACCATGCCTGGCTAATTTTGTATTTT-----------------  153
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||                 
Sbjct 4071  TCTCAAGTAGCTGGGATTACAAGCACCAGCCACCATGCCTGGCTAATTTTGTATTTTTAGTAGAGACAGGGTTT  4144

Query  154  --------------------------------------------------------------------------  153
                                                                                      
Sbjct 4145  CACCATGTTGGCCAGGCTGGTCTCGAATGTCTGACCTCAGGTGATCCACCCGCCTTGGCCTCCCAAAGTGCTGG  4218

Query  154  --------------------------------------------------------------------------  153
                                                                                      
Sbjct 4219  GATTACAGGCGCGAGCCACCGCGCCCAGCCTACACCACTTTTAGTACCAACACTCTTGGGTGATTTCATGGACC  4292

Query  154  --------------------------------------------------------------------------  153
                                                                                      
Sbjct 4293  CTAAAGCAGACCTGACACTGATCCAGATTTGCAGTCCATTTTTAAGGACACCTGTCTTTATTTCCTCAAAGTCA  4366

Query  154  --------------------------------------------------------------------------  153
                                                                                      
Sbjct 4367  AGCAGCTTTCTCTGGAAAATGAATGCTAATTAGTGTGAACCAAAAGAGTAAGTAAGAGTCTGAAGTTTTTTTAA  4440

Query  154  --------------------------------------------------------------------------  153
                                                                                      
Sbjct 4441  AGGAGAAAGCTTATTATGGAAAGTCACTGGTCCTCCCCTCCGCACAGGAAAGGTACCCAGTAGATAATGAACCA  4514

Query  154  --------------------------------------------------------------------------  153
                                                                                      
Sbjct 4515  AATTAAGTTCCCTCCCTCCAGCCAGAAGTTAAACATCTGGGATATGACGTCTTCATGCCAGGGGCACTCATTTC  4588

Query  154  --------------------------------------------------------------------------  153
                                                                                      
Sbjct 4589  TTAGCAGCCTCTCTACATACATCTCTCAGGTGGTGCCAAGAGGCACACCAGGTAGAGCAAACTTAGCAGCTCTG  4662

Query  154  --------------------------------------------------------------------------  153
                                                                                      
Sbjct 4663  ACTAACAGGCTGCAAAGTGCAAGTTCAGATTCTGTGGCAGAGATTTGGAAGGCACCCACCTCCAGACTGCTTCC  4736

Query  154  --------------------------------------------------------------------------  153
                                                                                      
Sbjct 4737  CGTCCAAGTTACCAGGACAGCTCAAAAACATGCTGACAGAAAACTCCCATGGCTCTAGGAAGAAGTGACACTAA  4810

Query  154  --------------------------------------------------------------------------  153
                                                                                      
Sbjct 4811  GCCAACACCTTTCTTTATGTGGGAGCAGAATCAGCTGATGAAGGGGTGGGCAGCAGTGTGGGGCAGGCACCCCA  4884

Query  154  --------------------------------------------------------------------------  153
                                                                                      
Sbjct 4885  CTGGCTGCAGCTAGCCCACCATAGGCACAGCACATCCCACCACTCTCCTTCCAGTCCTGACCAGGCCCCAGCCG  4958

Query  154  --------------------------------------------------------------------------  153
                                                                                      
Sbjct 4959  GCAACTTCTACCGAGAGCCATGGCTCAACACCAAACTGGACAGTAGACATCATGATCCCTCCAGTTAGCTCTAA  5032

Query  154  --------------------------------------------------------------------------  153
                                                                                      
Sbjct 5033  TTACAGACCCCACCAGTACAGCTTGACAGCTCCCGGCACCATCCCTTCCTTCATCTGACTTATTGAACTTTTAC  5106

Query  154  --------------------------------------------------------------------------  153
                                                                                      
Sbjct 5107  AAACTAACAGTCACCAGCACCAAAGAATTAAGTCAACTAACCTGCCTTGAATTTTAGACCAGCAATCCATATGG  5180

Query  154  --------------------------------------------------------------------------  153
                                                                                      
Sbjct 5181  CTTTATCTGGTATAAATCTTCTGCCTTTGATCATTTCTGGACCGTAGGAAAAAGGAATAGCAATCATTAAAATC  5254

Query  154  --------------------------------------------------------------------------  153
                                                                                      
Sbjct 5255  TTGGGCCAGAGAACACTATTTTTACATAACAGTTTCTTAACCTAAAGTCAAGGCCTTGGACTCTTCCCTGAGGG  5328

Query  154  --------------------------------------------------------------------------  153
                                                                                      
Sbjct 5329  TTGCCTGAGATTCCTTCATGCTTTCTATTCAGGACTAAGTCCCTTACTGCAAATGTGTTAGCTCTAACATCTCC  5402

Query  154  --------------------------------------------------------------------------  153
                                                                                      
Sbjct 5403  CACAAGCTAGAGGAACTTGCGAGTATATTAACAAGGACACATCTGACATCCTGTGTTTGGTTAGAATATACAGC  5476

Query  154  --------------------------------------------------------------------------  153
                                                                                      
Sbjct 5477  ACATTGTGATAACATAAAGTGGATTCATCTTGTATCATTATAGGCAGAAGGTATTTGGCAAATTTTTATGTATT  5550

Query  154  --------------------------------------------------------------------------  153
                                                                                      
Sbjct 5551  GTTTTATGTACTGTACAAGTAACTTATTCTTGAATAATGCAAATTTTGCTATAATGTACAAATTGCTATATGTG  5624

Query  154  -------------------------  153
                                     
Sbjct 5625  AATTAAAAAGTTTTCAGAATCTTGA  5649

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