Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_11496
- Subject:
- NM_001286277.2
- Aligned Length:
- 2728
- Identities:
- 1235
- Gaps:
- 1463
Alignment
Query 1 ATGGCGACCCCGGACCAGAAGTCGCCGAACGTTCTGCTGCAGAACCTGTGCTGCAGGATCCTGGGCAGGAGCGA 74
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGACCCCGGACCAGAAGTCGCCGAACGTTCTGCTGCAGAACCTGTGCTGCAGGATCCTGGGCAGGAGCGA 74
Query 75 AGCTGATGTAGCCCAGCAGTTCCAGTATGCTGTGCGGGTGATTGGCAGCAACTTCGCCCCAACTGTTGAAAGAG 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 AGCTGATGTAGCCCAGCAGTTCCAGTATGCTGTGCGGGTGATTGGCAGCAACTTCGCCCCAACTGTTGAAAGAG 148
Query 149 ATGAATTTTTAGTAGCTGAAAAAATCAAGAAAGAGCTTATTCGACAACGAAGAGAAGCAGATGCTGCATTATTT 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 ATGAATTTTTAGTAGCTGAAAAAATCAAGAAAGAGCTTATTCGACAACGAAGAGAAGCAGATGCTGCATTATTT 222
Query 223 TCAGAACTCCACAGAAAACTTCATTCACAGGGAGTTTTGAAAAATAAATGGTCAATACTCTACCTCTTGCTGAG 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 TCAGAACTCCACAGAAAACTTCATTCACAGGGAGTTTTGAAAAATAAATGGTCAATACTCTACCTCTTGCTGAG 296
Query 297 CCTCAGTGAGGACCCACGCAGGCAGCCAAGCAAGGTTTCTAGCTATGCTACGTTATTTGCTCAGGCCTTACCAA 370
|||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 297 CCTCAGTGAGGACCCACGCAGGCAGCCAAGCA------------------------------AGGCCTTACCAA 340
Query 371 GAGATGCCCACTCAACCCCTTACTACTATGCCAGGCCTCAGACCCTTCCCCTGAGCTACCAAGATCGGAGTGCC 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 341 GAGATGCCCACTCAACCCCTTACTACTATGCCAGGCCTCAGACCCTTCCCCTGAGCTACCAAGATCGGAGTGCC 414
Query 445 CAGTCAGCCCAGAGCTCCGGCAGCGTGGGCAGCAGTGGCATCAGCAGCATTGGCCTGTGTGCCCTCAGTGGCCC 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 CAGTCAGCCCAGAGCTCCGGCAGCGTGGGCAGCAGTGGCATCAGCAGCATTGGCCTGTGTGCCCTCAGTGGCCC 488
Query 519 CGCGCCTGCGCCACAATCTCTCCTCCCAGGACAGTCTAATCAAGCTCCAGGAGTAGGAGATTGCCTTCGACAGC 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 489 CGCGCCTGCGCCACAATCTCTCCTCCCAGGACAGTCTAATCAAGCTCCAGGAGTAGGAGATTGCCTTCGACAGC 562
Query 593 AGTTGGGGTCACGACTCGCATGGACTTTAACTGCAAATCAGCCTTCTTCACAAGCCACTACCTCAAAAGGTGTC 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 563 AGTTGGGGTCACGACTCGCATGGACTTTAACTGCAAATCAGCCTTCTTCACAAGCCACTACCTCAAAAGGTGTC 636
Query 667 CCCAGTGCTGTGTCTCGCAACATGACAAGGTCCAGGAGAGAAGGGGATACGGGTGGTACTATGGAAATTACAGA 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 637 CCCAGTGCTGTGTCTCGCAACATGACAAGGTCCAGGAGAGAAGGGGATACGGGTGGTACTATGGAAATTACAGA 710
Query 741 AGCAGCTCTGGTAAGGGACATTTTGTACGTCTTTCAGGGCATAGATGGCAAAAACATCAAAATGAACAACACTG 814
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 711 AGCAGCTCTGGTAAGGGACATTTTGTACGTCTTTCAGGGCATAGATGGCAAAAACATCAAAATGAACAACACTG 784
Query 815 AAAATTGTTACAAAGTAGAAGGAAAGGCAAATCTAAGTAGGTCTTTGAGAGACACAGCAGTCAGGCTTTCTGAG 888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 785 AAAATTGTTACAAAGTAGAAGGAAAGGCAAATCTAAGTAGGTCTTTGAGAGACACAGCAGTCAGGCTTTCTGAG 858
Query 889 TTGGGATGGTTGCATAATAAAATCAGAAGATACACGGACCAGAGGAGCCTGGACCGCTCATTCGGACTCGTCGG 962
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 859 TTGGGATGGTTGCATAATAAAATCAGAAGATACACGGACCAGAGGAGCCTGGACCGCTCATTCGGACTCGTCGG 932
Query 963 GCAGAGCTTTTGTGCTGCCTTGCACCAGGAACTCAGAGAATACTATCGATTGCTCTCTGTTTTACATTCTCAGC 1036
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 933 GCAGAGCTTTTGTGCTGCCTTGCACCAGGAACTCAGAGAATACTATCGATTGCTCTCTGTTTTACATTCTCAGC 1006
Query 1037 TACAACTAGAGGATGACCAGGGTGTGAATTTGGGACTTGAGAGTAGTTTAACACTTCGGCGCCTCCTGGTTTGG 1110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1007 TACAACTAGAGGATGACCAGGGTGTGAATTTGGGACTTGAGAGTAGTTTAACACTTCGGCGCCTCCTGGTTTGG 1080
Query 1111 ACCTATGATCCCAAAATACGACTGAAGACCCTTGCGGCCCTAGTGGACCACTGCCAAGG--------------- 1169
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 ACCTATGATCCCAAAATACGACTGAAGACCCTTGCGGCCCTAGTGGACCACTGCCAAGGAAGGAAAGGAGGTGA 1154
Query 1170 -------TC------CCACGC---------------------------GCG---TCTTTCCCACGCACGTCTTT 1200
|| |||||| ||| |||....|| ||||.||
Sbjct 1155 GCTGGCCTCAGCTGTCCACGCCTACACAAAAACAGGAGACCCGTACATGCGGTCTCTGGTGCA-GCACATC--- 1224
Query 1201 CCCA--CGCGCGACT---------------TTCC--CACGCGC------------------------GAC-TTT 1230
|.|| |.||.|.|| |||| .|| ||| ||| .||
Sbjct 1225 CTCAGCCTCGTGTCTCATCCTGTTTTGAGCTTCCTGTAC-CGCTGGATATATGATGGGGAGCTTGAGGACACTT 1297
Query 1231 CCCATGCACGTCTT-----------TCCCAC----------GCGCGTCTTTCCCACG-CGCGTCT-------GG 1275
.|||.|.|..|.|| |||.|| |..||.||.|..|||| |..||.| ||
Sbjct 1298 ACCACGAATTTTTTGTAGCATCAGATCCAACAGTTAAAACAGATCGACTGTGGCACGACAAGTATACTTTGAGG 1371
Query 1276 CACTCG-------CTTTGTT------------TCA------GAA----CTCGTTTG------------------ 1302
.|.||| |||.||| ||| ||| || ||||
Sbjct 1372 AAATCGATGATTCCTTCGTTTATGACGATGGATCAGTCTAGGAAGGTCCT--TTTGATAGGAAAATCAATAAAT 1443
Query 1303 -------------------------------------------------------------------------- 1302
Sbjct 1444 TTCTTGCACCAAGTTTGTCATGATCAGACTCCCACTACAAAGATGATAGCTGTGACCAAGTCTGCAGAGTCACC 1517
Query 1303 -------------------------------------------------------------------------- 1302
Sbjct 1518 CCAGGACGCTGCAGACCTATTCACAGACTTGGAAAATGCATTTCAGGGGAAGATTGATGCTGCTTATTTTGAGA 1591
Query 1303 -------------------------------------------------------------------------- 1302
Sbjct 1592 CCAGCAAATACCTGTTGGATGTTCTCAATAAAAAGTACAGCTTGCTGGACCACATGCAGGCAATGAGGCGGTAC 1665
Query 1303 -------------------------------------------------------------------------- 1302
Sbjct 1666 CTGCTTCTTGGTCAAGGAGACTTTATAAGGCACTTAATGGACTTGCTAAAACCAGAACTTGTCCGTCCAGCTAC 1739
Query 1303 -------------------------------------------------------------------------- 1302
Sbjct 1740 GACTTTGTATCAGCATAACTTGACTGGAATTCTAGAAACCGCTGTCAGAGCCACCAACGCACAGTTTGACAGTC 1813
Query 1303 -------------------------------------------------------------------------- 1302
Sbjct 1814 CTGAGATCCTGCGAAGGCTGGACGTGCGGCTGCTGGAGGTCTCTCCAGGTGACACTGGATGGGATGTCTTCAGC 1887
Query 1303 -------------------------------------------------------------------------- 1302
Sbjct 1888 CTCGATTATCATGTTGACGGACCAATTGCAACTGTGTTTACTCGAGAATGTATGAGCCACTACCTAAGAGTATT 1961
Query 1303 -------------------------------------------------------------------------- 1302
Sbjct 1962 TAACTTCCTCTGGAGGGCGAAGCGGATGGAATACATCCTCACTGACATACGGAAGGGACACATGTGCAATGCAA 2035
Query 1303 -------------------------------------------------------------------------- 1302
Sbjct 2036 AGCTCCTGAGAAACATGCCAGAGTTCTCCGGGGTGCTGCACCAGTGTCACATTTTGGCCTCTGAGATGGTCCAT 2109
Query 1303 -------------------------------------------------------------------------- 1302
Sbjct 2110 TTCATTCATCAGATGCAGTATTACATCACATTTGAGGTGCTTGAATGTTCTTGGGATGAGCTTTGGAACAAAGT 2183
Query 1303 -------------------------------------------------------------------------- 1302
Sbjct 2184 CCAGCAGGCCCAGGATTTGGATCACATCATTGCTGCACACGAGGTGTTCTTAGACACCATCATCTCCCGCTGCC 2257
Query 1303 -------------------------------------------------------------------------- 1302
Sbjct 2258 TGCTGGACAGTGACTCCAGGGCACTTTTAAATCAACTTAGAGCTGTGTTTGATCAAATTATTGAACTTCAGAAT 2331
Query 1303 -------------------------------------------------------------------------- 1302
Sbjct 2332 GCTCAAGATGCAATATACAGAGCTGCTCTGGAAGAATTGCAGAGACGATTACAGTTTGAAGAGAAAAAGAAACA 2405
Query 1303 -------------------------------------------------------------------------- 1302
Sbjct 2406 GCGTGAAATTGAGGGCCAGTGGGGAGTGACGGCAGCAGAGGAAGAGGAGGAAAATAAGAGGATTGGAGAATTTA 2479
Query 1303 -------------------------------------------------------------------------- 1302
Sbjct 2480 AAGAATCTATACCAAAAATGTGCTCACAGTTGCGAATATTGACCCATTTCTACCAGGGTATCGTGCAGCAGTTT 2553
Query 1303 -------------------------------------------------------------------------- 1302
Sbjct 2554 TTGGTGTTACTGACGACCAGCTCTGACGAGAGTCTTCGGTTTCTTAGCTTCAGGCTGGACTTCAACGAGCATTA 2627
Query 1303 ---------------------------------------------------------------- 1302
Sbjct 2628 CAAAGCCAGGGAGCCCAGGCTCCGTGTGTCTCTGGGTACCAGGGGGCGGCGCAGCTCCCACACG 2691
