Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_11496
Subject:
XM_011537462.2
Aligned Length:
2453
Identities:
1229
Gaps:
1183

Alignment

Query    1  ATGGCGACCCCGGACCAGAAGTCGCCGAACGTTCTGCTGCAGAACCTGTGCTGCAGGATCCTGGGCAGGAGCGA  74
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct    1  ATGGCGACCCCGGACCAGAAGTCGCCGAACGTTCTGCTGCAGAACCTGTGCTGCAGGATCCTGGGCAGGAGCGA  74

Query   75  AGCTGATGTAGCCCAGCAGTTCCAGTATGCTGTGCGGGTGATTGGCAGCAACTTCGCCCCAACTGTTGAAAGAG  148
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  AGCTGATGTAGCCCAGCAGTTCCAGTATGCTGTGCGGGTGATTGGCAGCAACTTCGCCCCAACTGTTGAAAGAG  148

Query  149  ATGAATTTTTAGTAGCTGAAAAAATCAAGAAAGAGCTTATTCGACAACGAAGAGAAGCAGATGCTGCATTATTT  222
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  ATGAATTTTTAGTAGCTGAAAAAATCAAGAAAGAGCTTATTCGACAACGAAGAGAAGCAGATGCTGCATTATTT  222

Query  223  TCAGAACTCCACAGAAAACTTCATTCACAGGGAGTTTTGAAAAATAAATGGTCAATACTCTACCTCTTGCTGAG  296
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  TCAGAACTCCACAGAAAACTTCATTCACAGGGAGTTTTGAAAAATAAATGGTCAATACTCTACCTCTTGCTGAG  296

Query  297  CCTCAGTGAGGACCCACGCAGGCAGCCAAGCAAGGTTTCTAGCTATGCTACGTTATTTGCTCAGGCCTTACCAA  370
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  CCTCAGTGAGGACCCACGCAGGCAGCCAAGCAAGGTTTCTAGCTATGCTACGTTATTTGCTCAGGCCTTACCAA  370

Query  371  GAGATGCCCACTCAACCCCTTACTACTATGCCAGGCCTCAGACCCTTCCCCTGAGCTACCAAGATCGGAGTGCC  444
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  GAGATGCCCACTCAACCCCTTACTACTATGCCAGGCCTCAGACCCTTCCCCTGAGCTACCAAGATCGGAGTGCC  444

Query  445  CAGTCAGCCCAGAGCTCCGGCAGCGTGGGCAGCAGTGGCATCAGCAGCATTGGCCTGTGTGCCCTCAGTGGCCC  518
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  CAGTCAGCCCAGAGCTCCGGCAGCGTGGGCAGCAGTGGCATCAGCAGCATTGGCCTGTGTGCCCTCAGTGGCCC  518

Query  519  CGCGCCTGCGCCACAATCTCTCCTCCCAGGACAGTCTAATCAAGCTCCAGGAGTAGGAGATTGCCTTCGACAGC  592
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  CGCGCCTGCGCCACAATCTCTCCTCCCAGGACAGTCTAATCAAGCTCCAGGAGTAGGAGATTGCCTTCGACAGC  592

Query  593  AGTTGGGGTCACGACTCGCATGGACTTTAACTGCAAATCAGCCTTCTTCACAAGCCACTACCTCAAAAGGTGTC  666
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  AGTTGGGGTCACGACTCGCATGGACTTTAACTGCAAATCAGCCTTCTTCACAAGCCACTACCTCAAAAGGTGTC  666

Query  667  CCCAGTGCTGTGTCTCGCAACATGACAAGGTCCAGGAGAGAAGGGGATACGGGTGGTACTATGGAAATTACAGA  740
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  CCCAGTGCTGTGTCTCGCAACATGACAAGGTCCAGGAGAGAAGGGGATACGGGTGGTACTATGGAAATTACAGA  740

Query  741  AGCAGCTCTGGTAAGGGACATTTTGTACGTCTTTCAGGGCATAGATGGCAAAAACATCAAAATGAACAACACTG  814
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  AGCAGCTCTGGTAAGGGACATTTTGTACGTCTTTCAGGGCATAGATGGCAAAAACATCAAAATGAACAACACTG  814

Query  815  AAAATTGTTACAAAGTAGAAGGAAAGGCAAATCTAAGTAGGTCTTTGAGAGACACAGCAGTCAGGCTTTCTGAG  888
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  AAAATTGTTACAAAGTAGAAGGAAAGGCAAATCTAAGTAGGTCTTTGAGAGACACAGCAGTCAGGCTTTCTGAG  888

Query  889  TTGGGATGGTTGCATAATAAAATCAGAAGATACACGGACCAGAGGAGCCTGGACCGCTCATTCGGACTCGTCGG  962
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  TTGGGATGGTTGCATAATAAAATCAGAAGATACACGGACCAGAGGAGCCTGGACCGCTCATTCGGACTCGTCGG  962

Query  963  GCAGAGCTTTTGTGCTGCCTTGCACCAGGAACTCAGAGAATACTATCGATTGCTCTCTGTTTTACATTCTCAG-  1035
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  963  GCAGAGCTTTTGTGCTGCCTTGCACCAGGAACTCAGAGAATACTATCGATTGCTCTCTGTTTTACATTCTCAGT  1036

Query 1036  ----------------------------------------------CTACAACTA------GAGG---------  1048
                                                          |.||||.||      ||||         
Sbjct 1037  TTTTTGTAGCATCAGATCCAACAGTTAAAACAGATCGACTGTGGCACGACAAGTATACTTTGAGGAAATCGATG  1110

Query 1049  ------------ATGAC-------CAGGGTGTGAA------TTTG---GGA--------------CTTG----A  1076
                        |||||       |||..|..|||      ||||   |||              ||||    |
Sbjct 1111  ATTCCTTCGTTTATGACGATGGATCAGTCTAGGAAGGTCCTTTTGATAGGAAAATCAATAAATTTCTTGCACCA  1184

Query 1077  GAGTAGTTT------AACACTTCGGCGCCTCC-----------TG--------------GTTTG----------  1109
                |||||      |.||       |.||||           ||              ||.||          
Sbjct 1185  ----AGTTTGTCATGATCA-------GACTCCCACTACAAAGATGATAGCTGTGACCAAGTCTGCAGAGTCACC  1247

Query 1110  -------------GACCTATGATCCC--------AAAAT------------ACGACTGA--------------A  1136
                         |||||||  ||.|        |||||            |.||.|||              |
Sbjct 1248  CCAGGACGCTGCAGACCTAT--TCACAGACTTGGAAAATGCATTTCAGGGGAAGATTGATGCTGCTTATTTTGA  1319

Query 1137  GACC--------------------------------------CTTGCGGCCCTAGTGGACCAC-TGC---CAA-  1167
            ||||                                      |||||        |||||||| |||   ||| 
Sbjct 1320  GACCAGCAAATACCTGTTGGATGTTCTCAATAAAAAGTACAGCTTGC--------TGGACCACATGCAGGCAAT  1385

Query 1168  -----GGTCCCACGCGCGTCTTTCCCACGCACGTCTTTCCCACGCGC------GACTTTC-----CCACGCGCG  1225
                 |||   ||..||.||||...||.|.| |.||||...|.||.|      |||||.|     |||     |
Sbjct 1386  GAGGCGGT---ACCTGCTTCTTGGTCAAGGA-GACTTTATAAGGCACTTAATGGACTTGCTAAAACCA-----G  1450

Query 1226  -ACTT-TC---CCATGC-ACGTCTTT-----------------------------------------------C  1246
             |||| ||   ||| || |||.||||                                               |
Sbjct 1451  AACTTGTCCGTCCA-GCTACGACTTTGTATCAGCATAACTTGACTGGAATTCTAGAAACCGCTGTCAGAGCCAC  1523

Query 1247  CCACGCGC---------GTCTT----TCC-----------CACGCGCGTC-------------------TGGCA  1277
            |.||||.|         |||.|    |||           .|||.|||.|                   ||.||
Sbjct 1524  CAACGCACAGTTTGACAGTCCTGAGATCCTGCGAAGGCTGGACGTGCGGCTGCTGGAGGTCTCTCCAGGTGACA  1597

Query 1278  CTCGCT---TTGT-TTCAGAACTCGTTTG---------------------------------------------  1302
            ||.|.|   .||| ||||| .||||.||.                                             
Sbjct 1598  CTGGATGGGATGTCTTCAG-CCTCGATTATCATGTTGACGGACCAATTGCAACTGTGTTTACTCGAGAATGTAT  1670

Query 1303  --------------------------------------------------------------------------  1302
                                                                                      
Sbjct 1671  GAGCCACTACCTAAGAGTATTTAACTTCCTCTGGAGGGCGAAGCGGATGGAATACATCCTCACTGACATACGGA  1744

Query 1303  --------------------------------------------------------------------------  1302
                                                                                      
Sbjct 1745  AGGGACACATGTGCAATGCAAAGCTCCTGAGAAACATGCCAGAGTTCTCCGGGGTGCTGCACCAGTGTCACATT  1818

Query 1303  --------------------------------------------------------------------------  1302
                                                                                      
Sbjct 1819  TTGGCCTCTGAGATGGTCCATTTCATTCATCAGATGCAGTATTACATCACATTTGAGGTGCTTGAATGTTCTTG  1892

Query 1303  --------------------------------------------------------------------------  1302
                                                                                      
Sbjct 1893  GGATGAGCTTTGGAACAAAGTCCAGCAGGCCCAGGATTTGGATCACATCATTGCTGCACACGAGGTGTTCTTAG  1966

Query 1303  --------------------------------------------------------------------------  1302
                                                                                      
Sbjct 1967  ACACCATCATCTCCCGCTGCCTGCTGGACAGTGACTCCAGGGCACTTTTAAATCAACTTAGAGCTGTGTTTGAT  2040

Query 1303  --------------------------------------------------------------------------  1302
                                                                                      
Sbjct 2041  CAAATTATTGAACTTCAGAATGCTCAAGATGCAATATACAGAGCTGCTCTGGAAGAATTGCAGAGACGATTACA  2114

Query 1303  --------------------------------------------------------------------------  1302
                                                                                      
Sbjct 2115  GTTTGAAGAGAAAAAGAAACAGCGTGAAATTGAGGGCCAGTGGGGAGTGACGGCAGCAGAGGAAGAGGAGGAAA  2188

Query 1303  --------------------------------------------------------------------------  1302
                                                                                      
Sbjct 2189  ATAAGAGGATTGGAGAATTTAAAGAATCTATACCAAAAATGTGCTCACAGTTGCGAATATTGACCCATTTCTAC  2262

Query 1303  --------------------------------------------------------------------------  1302
                                                                                      
Sbjct 2263  CAGGGTATCGTGCAGCAGTTTTTGGTGTTACTGACGACCAGCTCTGACGAGAGTCTTCGGTTTCTTAGCTTCAG  2336

Query 1303  --------------------------------------------------------------------------  1302
                                                                                      
Sbjct 2337  GCTGGACTTCAACGAGCATTACAAAGCCAGGGAGCCCAGGCTCCGTGTGTCTCTGGGTACCAGGGGGCGGCGCA  2410

Query 1303  -----------  1302
                       
Sbjct 2411  GCTCCCACACG  2421

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