Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_11497
Subject:
XM_011242062.1
Aligned Length:
2802
Identities:
1430
Gaps:
1137

Alignment

Query    1  ATGGCGACCCCGGACCAGAAGTCGCCGAACGTTCTGCTGCAGAACCTGTGCTGCAGGATCCTGGGCAGGAGCGA  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  AGCTGATGTAGCCCAGCAGTTCCAGTATGCTGTGCGGGTGATTGGCAGCAACTTCGCCCCAACTGTTGAAAGAG  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  ATGAATTTTTAGTAGCTGAAAAAATCAAGAAAGAGCTTATTCGACAACGAAGAGAAGCAGATGCTGCATTATTT  222
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  223  TCAGAACTCCACAGAAAACTTCATTCACAGGGAGTTTTGAAAAATAAATGGTCAATACTCTACCTCTTGCTGAG  296
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  297  CCTCAGTGAGGACCCACGCAGGCAGCCAAGCAAGGTTTCTAGCTATGCTACGTTATTTGCTCAGGCCTTACCAA  370
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  371  GAGATGCCCACTCAACCCCTTACTACTATGCCAGGCCTCAGACCCTTCCCCTGAGCTACCAAGATCGGAGTGCC  444
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  445  CAGTCAGCCCAGAGCTCCGGCAGCGTGGGCAGCAGTGGCATCAGCAGCATTGGCCTGTGTGCCCTCAGTGGCCC  518
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  519  CGCGCCTGCGCCACAATCTCTCCTCCCAGGACAGTCTAATCAAGCTCCAGGAGTAGGAGATTGCCTTCGACAGC  592
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  593  AGTTGGGGTCACGACTCGCATGGACTTTAACTGCAAATCAGCCTTCTTCACAAGCCACTACCTCAAAAGGTGTC  666
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  667  CCCAGTGCTGTGTCTCGCAACATGACAAGGTCCAGGAGAGAAGGGGATACGGGTGGTACTATGGAAATTACAGA  740
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  741  AGCAGCTCTGGTAAGGGACATTTTGTACGTCTTTCAGGGCATAGATGGCAAAAACATCAAAATGAACAACACTG  814
                                                                         ||||.||.|||||
Sbjct    1  -------------------------------------------------------------ATGAGCAGCACTG  13

Query  815  AAAATTGTTACAAAGTAGAAGGAAAGGCAAATCTAAGTAGGTCTTTGAGAGACACAGCAGTCAGGCTTTCTGAG  888
            ||||.|||||||||||.||||..||||||||..|||..|..||||||||.||||||||||||.|||||.|||||
Sbjct   14  AAAACTGTTACAAAGTGGAAGCGAAGGCAAACTTAAACAAATCTTTGAGGGACACAGCAGTCCGGCTTGCTGAG  87

Query  889  TTGGGATGGTTGCATAATAAAATCAGAAGATACACGGACCAGAGGAGCCTGGACCGCTCATTCGGACTCGTCGG  962
            ||||||||||||||||||||||||||||..||..|.|||||||||||.||||||||||||||.|||||.||.||
Sbjct   88  TTGGGATGGTTGCATAATAAAATCAGAAAGTATGCTGACCAGAGGAGTCTGGACCGCTCATTTGGACTTGTAGG  161

Query  963  GCAGAGCTTTTGTGCTGCCTTGCACCAGGAACTCAGAGAATACTATCGATTGCTCTCTGTTTTACATTCTCAGC  1036
            .|||||.||||||||.||.||||||||.||.||||.|||||||||..|..|.|||||||||.|.||.|||||||
Sbjct  162  TCAGAGTTTTTGTGCCGCATTGCACCAAGAGCTCAAAGAATACTACAGGCTCCTCTCTGTTCTGCACTCTCAGC  235

Query 1037  TACAACTAGAGGATGACCAGGGTGTGAATTTGGGACTTGAGAGTAGTTTAACACTTCGGCGCCTCCTGGTTTGG  1110
            |.||.|||||.|||||.||||||||||||||||||||.||||||||..|.|||||.||||||||||||||||||
Sbjct  236  TCCAGCTAGAAGATGATCAGGGTGTGAATTTGGGACTAGAGAGTAGCCTCACACTGCGGCGCCTCCTGGTTTGG  309

Query 1111  ACCTATGATCCCAAAATACGACTGAAGACCCTTGCGGCCCTAGTGGACCACTGCCAAGGAAGGAAAGGAGGTGA  1184
            ||.|||||.|||||||||.||.|.|||||||||||.||.||.||.||.||||||||||||.|.|||||.|||||
Sbjct  310  ACATATGACCCCAAAATAAGATTAAAGACCCTTGCTGCGCTGGTAGATCACTGCCAAGGACGAAAAGGGGGTGA  383

Query 1185  GCTGGCCTCAGCTGTCCACGCCTACACAAAAACAGGAGACCCGTACATGCGGTCTCTGGTGCAGCACATCCTCA  1258
            |||||||||.|||||.||.|||||.|||||.|||||.|||||.||||||..|||.||||||||||||||.||.|
Sbjct  384  GCTGGCCTCTGCTGTTCATGCCTATACAAAGACAGGGGACCCCTACATGAAGTCCCTGGTGCAGCACATTCTGA  457

Query 1259  GCCTCGTGTCTCATCCTGTTTTGAGCTTCCTGTACCGCTGGATATATGATGGGGAGCTTGAGGACACTTACCAC  1332
            ||.|.||||||||.|||||..||||||||||.|||||.||||||||||||||||||.|.|||||||||||||||
Sbjct  458  GCTTGGTGTCTCACCCTGTCCTGAGCTTCCTCTACCGGTGGATATATGATGGGGAGTTGGAGGACACTTACCAC  531

Query 1333  GAATTTTTTGTAGCATCAGATCCAACAGTTAAAACAGATCGACTGTGGCACGACAAGTATACTTTGAGGAAATC  1406
            |||||||||||.||.||.|||||||||||||||||.||.||.||.|||||||||||||||||..|||||||.||
Sbjct  532  GAATTTTTTGTGGCGTCTGATCCAACAGTTAAAACTGACCGTCTATGGCACGACAAGTATACCCTGAGGAAGTC  605

Query 1407  GATGATTCCTTCGTTTATGACGATGGATCAGTCTAGGAAGGTCCTTTTGATAGGAAAATCAATAAATTTCTTGC  1480
            .|||||.||.||.||.||.||||||||.|||||||||||||||||||||||||||||.||||||||||||||||
Sbjct  606  AATGATCCCCTCCTTCATTACGATGGACCAGTCTAGGAAGGTCCTTTTGATAGGAAAGTCAATAAATTTCTTGC  679

Query 1481  ACCAAGTTTGTCATGATCAGACTCCCACTACAAAGATGATAGCTGTGACCAAGTCTGCAGAGTCACCCCAGGAC  1554
            ||||||||||||||||||||||.||.||||||||.||||||||.|||||.|||||.|||||||||||||..|||
Sbjct  680  ACCAAGTTTGTCATGATCAGACACCTACTACAAAAATGATAGCAGTGACGAAGTCGGCAGAGTCACCCCGTGAC  753

Query 1555  GCTGCAGACCTATTCACAGACTTGGAAAATGCATTTCAGGGGAAGATTGATGCTGCTTATTTTGAGACCAGCAA  1628
            |||||.||..|||||||||||||.|||||.||||||||.|||||.|||||||||||||||||||||||||||||
Sbjct  754  GCTGCGGATTTATTCACAGACTTAGAAAACGCATTTCAAGGGAAAATTGATGCTGCTTATTTTGAGACCAGCAA  827

Query 1629  ATACCTGTTGGATGTTCTCAATAAAAAGTACAGCTTGCTGGACCACATGCAGGCAATGAGGCGGTACCTGCTTC  1702
            |||.|||||||||||.|||||||||||||||||..|||||||.|||||||||||.|||.|.|||||||||||.|
Sbjct  828  ATATCTGTTGGATGTCCTCAATAAAAAGTACAGTCTGCTGGAACACATGCAGGCCATGCGACGGTACCTGCTGC  901

Query 1703  TTGGTCAAGGAGACTTTATAAGGCACTTAATGGACTTGCTAAAACCAGAACTTGTCCGTCCAGCTACGACTTTG  1776
            ||||.|||||||||||.|||.|||||||||||||.|||||.||||||||||||||.||.|||||.||.||||||
Sbjct  902  TTGGCCAAGGAGACTTCATACGGCACTTAATGGATTTGCTCAAACCAGAACTTGTTCGGCCAGCAACAACTTTG  975

Query 1777  TATCAGCATAACTTGACTGGAATTCTAGAAACCGCTGTCAGAGCCACCAACGCACAGTTTGACAGTCCTGAGAT  1850
            |||||||||||||||||.||.|||||.|||||.|||||.|||||||||||.||.|||||||||||.||.|||||
Sbjct  976  TATCAGCATAACTTGACGGGGATTCTTGAAACTGCTGTGAGAGCCACCAATGCTCAGTTTGACAGCCCGGAGAT  1049

Query 1851  CCTGCGAAGGCTGGACGTGCGGCTGCTGGAGGTCTCTCCAGGTGACACTGGATGGGATGTCTTCAGCCTCGATT  1924
            |||....|||||.||.|||.|||||||||||||||||||.|||||||||||.|||||||||||||||||.||||
Sbjct 1050  CCTTAAGAGGCTCGATGTGAGGCTGCTGGAGGTCTCTCCTGGTGACACTGGGTGGGATGTCTTCAGCCTGGATT  1123

Query 1925  ATCATGTTGACGGACCAATTGCAACTGTGTTTACTCGAGAATGTATGAGCCACTACCTAAGAGTATTTAACTTC  1998
            |.||.||.||.||||||||.||.||||||||.||.|||||.||.||||||||||||||.|||||.|||||||||
Sbjct 1124  ACCACGTCGATGGACCAATCGCCACTGTGTTCACACGAGAGTGCATGAGCCACTACCTGAGAGTGTTTAACTTC  1197

Query 1999  CTCTGGAGGGCGAAGCGGATGGAATACATCCTCACTGACATACGGAAGGGACACATGTGCAATGCAAAGCTCCT  2072
            ||.||||||||.|||||.|||||.|||||||||||||||||.|||||.||.|||||||||||.||.|||||.||
Sbjct 1198  CTGTGGAGGGCCAAGCGCATGGAGTACATCCTCACTGACATCCGGAAAGGGCACATGTGCAACGCGAAGCTGCT  1271

Query 2073  GAGAAACATGCCAGAGTTCTCCGGGGTGCTGCACCAGTGTCACATTTTGGCCTCTGAGATGGTCCATTTCATTC  2146
            |||.||||||||.||||||||.||||||||.||||||||.|||||..|||||||.||||||||.||.|||||.|
Sbjct 1272  GAGGAACATGCCGGAGTTCTCTGGGGTGCTTCACCAGTGCCACATCCTGGCCTCAGAGATGGTGCACTTCATCC  1345

Query 2147  ATCAGATGCAGTATTACATCACATTTGAGGTG------------------------------------------  2178
            |.|||||||||||.||||||||.|||||||||                                          
Sbjct 1346  ACCAGATGCAGTACTACATCACCTTTGAGGTGAGTCAGCTAGCCGCAGTGTGGTGCAGCGGTGAGGTGAGCAGG  1419

Query 2179  ---------------------------------CTTGAATGTTCTTGGGATGAGCTTTGGAACAAAGTCCAGCA  2219
                                             ||.||.||.||.|||||||||||.|||||||.|||.|||||
Sbjct 1420  CCCCCCCAGAGTCTCCACGTGTCCTTTCAGGTTCTCGAGTGCTCCTGGGATGAGCTGTGGAACAGAGTGCAGCA  1493

Query 2220  GGCCCAGGATTTGGATCACATCATTGCTGCACACGAGGTGTTCTTAGACACCATCATCTCCCGCTGCCTGCTGG  2293
            |||||||||..||||.|||||.|||||.||||||||||.||||.|..|||||||||.|||||||||.||.||||
Sbjct 1494  GGCCCAGGACCTGGACCACATTATTGCAGCACACGAGGCGTTCCTGAACACCATCACCTCCCGCTGTCTCCTGG  1567

Query 2294  ACAGTGACTCCAGGGCACTTTTAAATCAACTTAGAGCTGTGTTTGATCAAATTATTGAACTTCAGAATGCTCAA  2367
            |.||..|||||||||..||||||||.|||||.|||||.||||||||.|||||.|||||||||||||||||.||.
Sbjct 1568  ATAGCAACTCCAGGGTGCTTTTAAACCAACTGAGAGCCGTGTTTGACCAAATCATTGAACTTCAGAATGCCCAG  1641

Query 2368  GATGCAATATACAGAGCTGCTCTGGAAGAATTGCAGAGACGATTACAGTTTGAAGAGAAAAAGAAACAGCGTGA  2441
            ||.|..||.||||||||.||||||||.||..|||||||.||..|.|||||||||||||||||||||||||||||
Sbjct 1642  GACGTGATGTACAGAGCAGCTCTGGAGGAGCTGCAGAGGCGTCTGCAGTTTGAAGAGAAAAAGAAACAGCGTGA  1715

Query 2442  AATTGAG-----GTTGAGATGTGCCTATACTGCGTT--------------------------------------  2472
            |||||||     ||.|.|| |||     ||||||..                                      
Sbjct 1716  AATTGAGGGCCAGTGGGGA-GTG-----ACTGCGGCAGAGGAAGAGGAGGAGAACAAGAGGATCCGAGAATTCC  1783

Query 2473  --------------------------------------------------------------------------  2472
                                                                                      
Sbjct 1784  AGGACTCCATACCAAAAATGTGCTCACAGTTGCGAATATTGACGCACTTCTACCAGGGTGTGGTGCAGCAGTTT  1857

Query 2473  --------------------------------------------------------------------------  2472
                                                                                      
Sbjct 1858  CTGGTGTTACTCACGACCAGCTCTGATGAAAGTCTCCAGTTTCTCAGCTTCAGATTGGACTTCAACGAACATTA  1931

Query 2473  ----------------------------------------------------------------  2472
                                                                            
Sbjct 1932  CAAAGCCAGAGAACCCAGGCTCCGGGTCTCTCTGGGCAGTAGGGGGCGGCGCAGTTCCCACACG  1995

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