Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_11568
Subject:
XR_002959043.1
Aligned Length:
2822
Identities:
709
Gaps:
2103

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AAACTCTGCTCCGTGCACGTCAAATGCTCCTTTCCCTTGTGTCCAACCCCCTACCCCTCTCCCTAACACCCCTC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TTCTCAACAAGACTCAGCCTCTCCCCGAGGTGGGTGAGCATCCTTGAGGTTTCCCACCCTTAACTGCTGTGTCC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CCGGATGGAGCCAGAGAAATGTGGTGGGGGGGCCGGGGCCAGAGTTTCAACATTGCCCCCCAGAAGGAGGAGCC  222

Query    1  ----------------------------ATGCCGGAGCCCAGGAGTCGTCAGCCTAGCAGTTGCCTGGCCTCCA  46
                                        ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  AGAGATGGGGTCTGTCCAGGAAAATAGGATGCCGGAGCCCAGGAGTCGTCAGCCTAGCAGTTGCCTGGCCTCCA  296

Query   47  GATGCCTCCCAGGGGAGCAGATCCTAGCATGGGCCCCAGGGGTGAGGAAGGGCCTGGAACCAGAATTGTCTGGA  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  GATGCCTCCCAGGGGAGCAGATCCTAGCATGGGCCCCAGGGGTGAGGAAGGGCCTGGAACCAGAATTGTCTGGA  370

Query  121  ACCCTGATCTGTACCAACTTTAGGGTCACCTTCCAGCCCTGTGGATGGCAGTGGAATCAGGACACTCCCTTGAA  194
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  ACCCTGATCTGTACCAACTTTAGGGTCACCTTCCAGCCCTGTGGATGGCAGTGGAATCAGGACACTCCCTTGAA  444

Query  195  CAGTGAATACGATTTTGCCCTGGTCAACATTGGACGATTAGAGGCTGTGAGCGGCTTGTCCCGAGTCCAGCTCC  268
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  CAGTGAATACGATTTTGCCCTGGTCAACATTGGACGATTAGAGGCTGTGAGCGGCTTGTCCCGAGTCCAGCTCC  518

Query  269  TCCGTCCAGGGTCCCTGCATAAATTTATCCCTGAGGAGATTCTGATTCATGGCCGAGACTTCCGGCTGCTCAGA  342
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  TCCGTCCAGGGTCCCTGCATAAATTTATCCCTGAGGAGATTCTGATTCATGGCCGAGACTTCCGGCTGCTCAGA  592

Query  343  GTTGGTTTTGAGGCTGGAGGCCTAGAGCCTCAGGCTTTTCAGGTGACCATGGCCATTGTCCAAGCCAGAGCTCA  416
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  GTTGGTTTTGAGGCTGGAGGCCTAGAGCCTCAGGCTTTTCAGGTGACCATGGCCATTGTCCAAGCCAGAGCTCA  666

Query  417  GAGCAATCAAGCCCAACAGTATTCGGGGATAACCCTGAGCAAGGCTGGCCAGGGTTCTGGCTCCAGAAAACCAC  490
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  GAGCAATCAAGCCCAACAGTATTCGGGGATAACCCTGAGCAAGGCTGGCCAGGGTTCTGGCTCCAGAAAACCAC  740

Query  491  CAATTCCTCTCATGGAGACAGCGGAAGACTGGGAGACTGAGCGGAAGAAGCAGGCAGCCAGAGGCTGGAGGGTC  564
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  CAATTCCTCTCATGGAGACAGCGGAAGACTGGGAGACTGAGCGGAAGAAGCAGGCAGCCAGAGGCTGGAGGGTC  814

Query  565  AGCACGGTCAACGAGAGGTTCGACGTAGCCACCAGCCTCCCCCGTTACTTCTGGGTCCCTAACCGAATTCTGGA  638
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  AGCACGGTCAACGAGAGGTTCGACGTAGCCACCAGCCTCCCCCGTTACTTCTGGGTCCCTAACCGAATTCTGGA  888

Query  639  CAGTGAGGTCAGGAGAGCATTTGGCCACTTTCATCAGGGCCGTGGACCGGTCAGTGTGATGG--------TTAG  704
            |||||||||||||||||||||||||||||||||||||||||||||||||..| .|||..|||        |..|
Sbjct  889  CAGTGAGGTCAGGAGAGCATTTGGCCACTTTCATCAGGGCCGTGGACCGCGC-TTGTCCTGGCATCACCCTGGG  961

Query  705  GGTAATG---------GCTGTGGAT-------------------------------------------------  720
            ||.|.||         ||||||||.                                                 
Sbjct  962  GGCAGTGATCTTCTCCGCTGTGGAGGCTTCTATACAGCCAGTGACCCTAACAAGGAGGATATCAGAGCAGTGGA  1035

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 1036  GTTGATGCTCCAGGCTGGGCATTCAGATGTTGTCCTGGTAGACACTATGGATGAGCTGCCCAGCCTTGCAGATG  1109

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 1110  TCCAACTTGCCCACCTGAGGCTGAGGGCCCTCTGCCTGCCTGATTCATCTGTAGCTGAGGATAAATGGCTTTCA  1183

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 1184  GCCCTGGAAGGAACACGATGGCTGGACTATGTCAGGGCTTGTCTTCGAAAGGCCAGTGACATTTCAGTATTAGT  1257

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 1258  GACATCCAGGGTTCGTTCTGTAATACTTCAAGTTTCTTGGACCCCTCTTCTTTGTCCCTTCTTCCTCTTTATCA  1331

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 1332  CCCAGAGCGCGGTGATCGTGATCTCAATGGCCTCCTCTCTTCACTCGTCCAGCTGCTTTCAGCCCCCGAAGCCC  1405

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 1406  GAACACTGTTTGGCTTCCAATCACTAGTACAGCGAGAGTGGGTGGCAGCTGGACATCCCTTCCTGACTCGGCTT  1479

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 1480  GGGGGAACTGGGGCCAGTGAAGAGGCTCCGGTGTTTCTCCTCTTCCTTGATTGTGTCTGGCAGCTCCTCCAGCA  1553

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 1554  GTTTCCAGCTGATTTTGAATTCTCTGAGTTTTTCCTTCTTGCTCTTCATGACAGTGTCAGGGTTCCTGACACCC  1627

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 1628  TTACCTTCCTGAGAAATACCCCCTGGGAGCGCGGAAAGCAGAGCGGACAGTTAAACTCCTATACACAAGTCTAC  1701

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 1702  ACCCCAGGATACTCCCAGCCTCCAGCTGGGAACTCTTTTAACCTGCAGCTGTCTGTCTGGGACTGGGATTTACG  1775

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 1776  TTATAGCAATGCACAGATACTACAATTCCAGAATCCTGGCTATGACCCAGAACACTGTCCAGATTCCTGGCTCC  1849

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 1850  CTAGACCACAGCCAAGCTTCATGGTTCCTGGACCCCCCAGTTCTGTGTGGCTCTTCTCTAGAGGAGCATTGACC  1923

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 1924  CCCCTGAATCAGCTCTGTCCTTGGCGGGACAGTCCTTCCCTGCTGGCAGTCTCTTCTCGTTGGCTCCCTCGACC  1997

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 1998  TGCTATCTCCTCTGAAAGCCTGGCTGACCAGGAATGGGGTCTCCCCTCACATTGGGGAGCTTGCCCTTTACCTC  2071

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 2072  CAGGGCTGCTGCTGCCTGGGTATCTGGGACCCCAGATCAGGCTCTGGAGACGCTGCTACCTGAGGGGAAGGCCT  2145

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 2146  GAGGTCCAGATGGGCCTCTCAGCTCCCACAATCTCTGGCCTCCAGGATGAGCTATCCCATCTTCAGGAGTTATT  2219

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 2220  ACGGAAATGGACACCAAGAATATCTCCTGAGGATCACTCCAAGAAAAGAGATCCACATACCATTCTCAATCCCA  2293

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 2294  CTGAAATTGCTGGCATTCTCAAAGGCAGGGCAGAGGGGGATCTGGGGTAGAGGAGGGTTCTGTCTAATCTTTTT  2367

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 2368  TTTTTTTTTTTGTATCTGCACTTGCAGCCTCAGCTTTCACACTTCAGCCCTTAAGTTCACTAAGAAGGTCTGAG  2441

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 2442  TTTCTGCTGCAGATAGTGGTGTTAACTGCTCCAACTCTTGTCTTGCTTAGTTTCTACAAATATTTTTGCTTCTT  2515

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 2516  GTCATTTGAAGGATTAAGAAACAAAAACAATCCAGAAATTGATCGGTTTTTTTAGGCCAATCCCATCCCTTCTG  2589

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 2590  GATAACCAGATGTTAAATCATGAGATCAGAGATGCTGTTCATCAGTCCCAACAAGATGGCCTAGAAATCGCATT  2663

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 2664  CTCACCTCGCCTTGCTGCTGCTTTAATTCCAAGTTCTATTTCTTCCCTTATAGTTTTCTATGGGAATGAGGCGG  2737

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 2738  ATACAGGAAACACCCTATCTCCTCTGTATTTTTGTAGTGGAATTTCTATTTAAGGGGCTCATTAAAGCATAGTA  2811

Query  721  ----------  720
                      
Sbjct 2812  TTTATACACA  2821

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.