Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_11568
Subject:
XR_002959062.1
Aligned Length:
2938
Identities:
709
Gaps:
2219

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AGAGTCGACTGAAGTTTCCGAGGAGACTTCTCAGGCTGGGCTGGACACACCTTTCCAAGGACCCCCAAACTCTG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CTCCGTGCACGTCAAATGCTCCTTTCCCTTGTGTCCAACCCCCTACCCCTCTCCCTAACACCCCTCTTCTCAAC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  AAGACTCAGCCTCTCCCCGAGGTGGGTGAGCATCCTTGAGGTTTCCCACCCTTAACTGCTGTGTCCCCGGATGG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  AGCCAGAGAAATGTGGTGGGGGGGCCGGGGCCAGAGTTTCAACATTGCCCCCCAGAAGGAGGAGCCAGAGATGG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GGCCCTGTTAGGTCTGGAGCTCCCCACAGACACTGATCTCAGTTTCCCCCGAGAGTGTGAGTGTAGGCCTCTAC  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  AGGCAGCTGCCTCTGGGGAGTTGGGGAGCCTAGGGGTTAACTCTAGACCCCCCTCAACCCTCTGGACCAAAGTC  444

Query    1  ----------------ATGCCGGAGCCCAGGAGTCGTCAGCCTAGCAGTTGCCTGGCCTCCAGATGCCTCCCAG  58
                            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  TGTCCAGGAAAATAGGATGCCGGAGCCCAGGAGTCGTCAGCCTAGCAGTTGCCTGGCCTCCAGATGCCTCCCAG  518

Query   59  GGGAGCAGATCCTAGCATGGGCCCCAGGGGTGAGGAAGGGCCTGGAACCAGAATTGTCTGGAACCCTGATCTGT  132
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  GGGAGCAGATCCTAGCATGGGCCCCAGGGGTGAGGAAGGGCCTGGAACCAGAATTGTCTGGAACCCTGATCTGT  592

Query  133  ACCAACTTTAGGGTCACCTTCCAGCCCTGTGGATGGCAGTGGAATCAGGACACTCCCTTGAACAGTGAATACGA  206
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  ACCAACTTTAGGGTCACCTTCCAGCCCTGTGGATGGCAGTGGAATCAGGACACTCCCTTGAACAGTGAATACGA  666

Query  207  TTTTGCCCTGGTCAACATTGGACGATTAGAGGCTGTGAGCGGCTTGTCCCGAGTCCAGCTCCTCCGTCCAGGGT  280
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  TTTTGCCCTGGTCAACATTGGACGATTAGAGGCTGTGAGCGGCTTGTCCCGAGTCCAGCTCCTCCGTCCAGGGT  740

Query  281  CCCTGCATAAATTTATCCCTGAGGAGATTCTGATTCATGGCCGAGACTTCCGGCTGCTCAGAGTTGGTTTTGAG  354
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  CCCTGCATAAATTTATCCCTGAGGAGATTCTGATTCATGGCCGAGACTTCCGGCTGCTCAGAGTTGGTTTTGAG  814

Query  355  GCTGGAGGCCTAGAGCCTCAGGCTTTTCAGGTGACCATGGCCATTGTCCAAGCCAGAGCTCAGAGCAATCAAGC  428
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  GCTGGAGGCCTAGAGCCTCAGGCTTTTCAGGTGACCATGGCCATTGTCCAAGCCAGAGCTCAGAGCAATCAAGC  888

Query  429  CCAACAGTATTCGGGGATAACCCTGAGCAAGGCTGGCCAGGGTTCTGGCTCCAGAAAACCACCAATTCCTCTCA  502
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  CCAACAGTATTCGGGGATAACCCTGAGCAAGGCTGGCCAGGGTTCTGGCTCCAGAAAACCACCAATTCCTCTCA  962

Query  503  TGGAGACAGCGGAAGACTGGGAGACTGAGCGGAAGAAGCAGGCAGCCAGAGGCTGGAGGGTCAGCACGGTCAAC  576
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  TGGAGACAGCGGAAGACTGGGAGACTGAGCGGAAGAAGCAGGCAGCCAGAGGCTGGAGGGTCAGCACGGTCAAC  1036

Query  577  GAGAGGTTCGACGTAGCCACCAGCCTCCCCCGTTACTTCTGGGTCCCTAACCGAATTCTGGACAGTGAGGTCAG  650
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  GAGAGGTTCGACGTAGCCACCAGCCTCCCCCGTTACTTCTGGGTCCCTAACCGAATTCTGGACAGTGAGGTCAG  1110

Query  651  GAGAGCATTTGGCCACTTTCATCAGGGCCGTGGACCGGTCAGTGTGATGG--------TTAGGGTAATG-----  711
            |||||||||||||||||||||||||||||||||||||..| .|||..|||        |..|||.|.||     
Sbjct 1111  GAGAGCATTTGGCCACTTTCATCAGGGCCGTGGACCGCGC-TTGTCCTGGCATCACCCTGGGGGCAGTGATCTT  1183

Query  712  ----GCTGTGGAT-------------------------------------------------------------  720
                ||||||||.                                                             
Sbjct 1184  CTCCGCTGTGGAGGCTTCTATACAGCCAGTGACCCTAACAAGGAGGATATCAGAGCAGTGGAGTTGATGCTCCA  1257

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 1258  GGCTGGGCATTCAGATGTTGTCCTGGTAGACACTATGGATGAGCTGCCCAGCCTTGCAGATGTCCAACTTGCCC  1331

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 1332  ACCTGAGGCTGAGGGCCCTCTGCCTGCCTGATTCATCTGTAGCTGAGGATAAATGGCTTTCAGCCCTGGAAGGA  1405

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 1406  ACACGATGGCTGGACTATGTCAGGGCTTGTCTTCGAAAGGCCAGTGACATTTCAGTATTAGTGACATCCAGGGT  1479

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 1480  TCGTTCTGTAATACTTCAAGCTGCTTTCAGCCCCCGAAGCCCGAACACTGTTTGGCTTCCAATCACTAGTACAG  1553

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 1554  CGAGAGTGGGTGGCAGCTGGACATCCCTTCCTGACTCGGCTTGGGGGAACTGGGGCCAGTGAAGAGGCTCCGGT  1627

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 1628  GTTTCTCCTCTTCCTTGATTGTGTCTGGCAGCTCCTCCAGCAGTTTCCAGCTGATTTTGAATTCTCTGAGTTTT  1701

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 1702  TCCTTCTTGCTCTTCATGACAGTGTCAGGGTTCCTGACACCCTTACCTTCCTGAGAAATACCCCCTGGGAGCGC  1775

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 1776  GGAAAGCAGAGCGGACAGTTAAACTCCTATACACAAGTCTACACCCCAGGATACTCCCAGCCTCCAGCTGGGAA  1849

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 1850  CTCTTTTAACCTGCAGCTGTCTGTCTGGGACTGGGATTTACGTTATAGCAATGCACAGATACTACAATTCCAGA  1923

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 1924  ATCCTGGCTATGACCCAGAACACTGTCCAGATTCCTGGCTCCCTAGACCACAGCCAAGCTTCATGGTTCCTGGA  1997

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 1998  CCCCCCAGTTCTGTGTGGCTCTTCTCTAGAGGAGCATTGACCCCCCTGAATCAGCTCTGTCCTTGGCGGGACAG  2071

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 2072  TCCTTCCCTGCTGGCAGTCTCTTCTCGTTGGCTCCCTCGACCTGCTATCTCCTCTGAAAGCCTGGCTGACCAGG  2145

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 2146  AATGGGGTCTCCCCTCACATTGGGGAGCTTGCCCTTTACCTCCAGGGCTGCTGCTGCCTGGGTATCTGGGACCC  2219

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 2220  CAGATCAGGCTCTGGAGACGCTGCTACCTGAGGGGAAGGCCTGAGGTCCAGATGGGCCTCTCAGCTCCCACAAT  2293

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 2294  CTCTGGCCTCCAGGATGAGCTATCCCATCTTCAGGAGTTATTACGGAAATGGACACCAAGAATATCTCCTGAGG  2367

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 2368  ATCACTCCAAGAAAAGAGATCCACATACCATTCTCAATCCCACTGAAATTGCTGGCATTCTCAAAGGCAGGGCA  2441

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 2442  GAGGGGGATCTGGGGTAGAGGAGGGTTCTGTCTAATCTTTTTTTTTTTTTTTTGTATCTGCACTTGCAGCCTCA  2515

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 2516  GCTTTCACACTTCAGCCCTTAAGTTCACTAAGAAGGTCTGAGTTTCTGCTGCAGATAGTGGTGTTAACTGCTCC  2589

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 2590  AACTCTTGTCTTGCTTAGTTTCTACAAATATTTTTGCTTCTTGTCATTTGAAGGATTAAGAAACAAAAACAATC  2663

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 2664  CAGAAATTGATCGGTTTTTTTAGGCCAATCCCATCCCTTCTGGATAACCAGATGTTAAATCATGAGATCAGAGA  2737

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 2738  TGCTGTTCATCAGTCCCAACAAGATGGCCTAGAAATCGCATTCTCACCTCGCCTTGCTGCTGCTTTAATTCCAA  2811

Query  721  --------------------------------------------------------------------------  720
                                                                                      
Sbjct 2812  GTTCTATTTCTTCCCTTATAGTTTTCTATGGGAATGAGGCGGATACAGGAAACACCCTATCTCCTCTGTATTTT  2885

Query  721  ----------------------------------------------------  720
                                                                
Sbjct 2886  TGTAGTGGAATTTCTATTTAAGGGGCTCATTAAAGCATAGTATTTATACACA  2937

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