Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_11720
Subject:
NM_001293300.1
Aligned Length:
4656
Identities:
402
Gaps:
4209

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGGAACCGAGAATGGAGTCCTGTCTGGCCCAGGTGCTGCAGAAGGATGTGGGAAAGCGGCTGCAGGTTGGCCA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GGAACTCATAGACTATTTCTCAGACAGACAGAAGTCTGCTGACCTTGAGCACGACCAGACCCTGTTGGATAAGC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  TTGTGGATGGACTCGCTACCTCTTGGGTGAACTCTAGCAATTACAAGGTGGTTCTCTTGGGCATGGACATCCTG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  TCGGCACTGGTGACTAGGCTGCAGGACCGGTTCAAGGCGCAAATCGGCACAGTGTTGCCAAGTCTAATAGACAG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  ACTGGGAGATGCTAAAGACTCCGTGAGGGAGCAAGACCAAACCCTGCTGCTAAAGATCATGGATCAAGCTGCTA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  ATCCCCAGTATGTGTGGGACAGAATGCTCGGAGGCTTCAAACACAAGAACTTCCGCACAAGAGAGGGCATCTGC  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  CTCTGCCTTATTGCAACACTCAATGCCTCTGGGGCCCAGACTCTAACACTAAGCAAGATTGTGCCACATATATG  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  TAACCTACTGGGAGATCCCAACAGCCAGGTTCGAGACGCAGCAATAAACAGTCTGGTGGAGATTTATAGACATG  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  TAGGTGAACGTGTGAGGGCAGACCTCAGTAAGAAAGGACTGCCACAGTCCCGGTTGAATGTCATTTTTACAAAA  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  TTTGATGAAGTCCAAAAGTCTGGAAATATGATACAGTCTGCAAATGAAAAAAATTTTGATGATGAAGATTCTGT  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  GGATGGCAACAGGCCTTCTTCTGCCAGCTCCTCATCATCCAAGGCCCCATCAAGTTCCCGGAGGAATGTTAACC  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  TGGGGACCACCCGTAGGCTCATGTCATCCAGTCTTGGATCTAAGTCTTCAGCTGCAAAAGAAGGCGCTGGTGCT  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  GTGGATGAAGAGGATTTTATTAAAGCCTTTGATGATGTACCTGTAGTGCAGATTTACTCCAGCCGAGACCTCGA  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  GGAATCCATAAACAAAATCAGAGAAATCCTGTCAGATGACAAGCATGACTGGGAGCAGAGAGTAAATGCTCTAA  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  AAAAGATTAGATCGTTACTCTTGGCTGGGGCTGCTGAGTACGATAACTTCTTTCAACACTTGCGTCTTCTGGAC  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  GGGGCCTTTAAACTCTCTGCTAAGGACCTGCGGTCTCAGGTAGTGCGGGAAGCTTGTATCACATTGGGGCATCT  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  GTCATCAGTTCTGGGAAATAAGTTTGATCATGGAGCTGAAGCCATTATGCCAACTATCTTTAATTTAATCCCGA  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  ACAGTGCCAAAATTATGGCTACTTCTGGTGTTGTAGCTGTTAGGCTAATCATTCGGCACACTCACATCCCTCGG  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  CTGATCCCTGTCATAACCAGCAACTGTACCTCTAAGTCTGTCGCCGTCAGAAGGCGCTGTTTTGAATTTTTAGA  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  TTTGCTTTTACAAGAATGGCAGACACATTCACTAGAAAGACATATATCAGTATTAGCTGAAACAATAAAGAAAG  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  GAATACACGACGCTGATTCTGAAGCGAGAATAGAAGCCAGGAAGTGCTACTGGGGTTTCCACAGTCACTTCAGC  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  CGAGAAGCAGAACACCTGTACCACACTTTGGAGTCCTCGTATCAGAAGGCCCTACAGTCCCACTTGAAGAACTC  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  GGACAGCATCGTGTCTCTGCCCCAGTCAGACCGATCCTCTTCCAGCTCTCAAGAGAGTCTCAACCGGCCACTTT  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  CAGCCAAAAGAAGTCCCACTGGCAGCACTGCATCCAGAGGCTCTACAGTTAGTACCAAATCTGTGTCGACGACA  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  GGATCTCTCCAGCGATCTCGAAGTGATATTGATGTGAACGCAGCAGCCAGTGCCAAATCCAAAGTCTCCTCATC  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  CTCAGGATCCCCCGCCTTCAGCTCTGCAGCAGCACTGCCCCCAGGATCCTATGCGTCCCTAGACGGTACTACCA  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  CTAAAGCGGAGGGTCGGATCCGCACGAGACGGCAGAGCTCGGGGAGCACCACCAATGTCGCCTCCACACCCTCC  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  GACAGTCGGGGCCGCAGTCGCGCCAAAGTGGTTTCACAGTCTCAGCGATCCAGATCTGCTAACCCTGCTGGTGC  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  TGGCAGCCGGTCAAGTTCCCCTGGGAAGCTTTTGGGAAGTGGACTTGCTGGGGGTTCCTCCAGAGGCCCACCGG  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  TAACACCATCCTCAGAAAAACGGAGCAAGATCCCCAGGAGTCAGGGATGTAGCCGAGAAACAAGTCCTAACCGG  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  ATTGGATTAGCACGGAGCAGCCGTATCCCCCGACCCAGCATGAGTCAGGGGTGCAGCCGCGATACCAGCCGTGA  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  GAGCAGCCGCGATACAAGCCCTGCTCGGGGCTTCACACCACTCGATCGGTTTGGGCTGGGCCAGTCAGGACGAA  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  TCCCTGGTTCTGTGAACGCCATGAGAGTCTTGAGTACCAGCACTGACCTGGAAGCAGCAGTGGCTGACGCTCTG  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  CTGTTAGGAGACGCCAGGAGCAAGAAGAAGCCTGTGAGAAGGAGATACGAGCCCTATGGAATGTACTCTGATGA  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  TGATGCCAACAGTGATGCCTCCAGCGTGTGCTCTGAGCGCTCATATGGCTCCAGGAATGGTGGCATTCCCCATT  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  ATCTGCGGCAGACTGAAGATGTAGCAGAGGTTCTCAACCATTGTGCCAGTTCCAACTGGTCAGAACGGAAAGAG  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  GGGCTCCTGGGCCTGCAGAACTTACTGAAGAGCCAAAGAACACTGAGTCGAGTAGAATTGAAGAGACTGTGTGA  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  GATTTTCACCCGAATGTTTGCCGACCCTCACAGCAAGAGAGTTTTCAGTATGTTTTTGGAGACCCTCGTGGATT  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  TTATAATCATTCATAAGGATGACTTGCAAGACTGGCTCTTCGTCCTTCTCACACAACTACTTAAGAAAATGGGA  2886

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2887  GCAGACTTACTTGGATCTGTGCAAGCAAAAGTTCAGAAGGCTCTCGATGTCACCAGGGATTCCTTTCCATTTGA  2960

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2961  TCAACAATTTAACATTTTGATGAGATTTATTGTGGATCAGACTCAAACTCCAAACCTCAAGGTCAAAGTAGCAA  3034

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3035  TCCTGAAATACATCGAATCTCTAGCCAGACAGATGGACCCCACAGATTTTGTAAATTCCAGCGAAACAAGACTA  3108

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3109  GCTGTTTCTAGGATCATAACATGGACTACAGAACCAAAGAGTTCAGACGTGAGAAAGGCAGCACAAATTGTGCT  3182

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3183  CATCTCTCTGTTTGAACTGAACACGCCTGAATTTACCATGTTACTTGGTGCCTTGCCAAAAACATTCCAGGATG  3256

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3257  GTGCCACCAAACTCCTGCATAACCACCTCAAGAACTCCAGTAACACCGGTGTGGGATCTCCAAGCAATACAATT  3330

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3331  GGCCGGACACCTTCCCGCCACCCCAGCAGCAGGACCAGCCCCCTGACCTCACCCACCAACTGTTCCCATGGGGG  3404

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3405  ACTATCTCCAAGTCGGTTGTGGGGTTGGAGTGCCGACGGGCTATCGAAGCCCCCACCTCCCTTTTCTCAGCCTA  3478

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3479  ACTCCATTCCCACCGCTCCCTCCCACAAGACTCTCAGGCGCTCTTACTCTCCCAGCATGCTGGACTATGATACA  3552

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3553  GAGAACCTGAACTCTGAAGAAATCTACAGCTCTTTGCGTGGAGTTACAGAAGCCATTGAAAAGTTCAGCTTCCG  3626

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3627  AAGCCAGGAGGATCTAAATGAGCCAATCAAACGAGATGGCAAGAAGGATTGTGATATCGTGTCCCGAGATGGGG  3700

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3701  GAGCAGCCTCACCTGCCACCGAGGGCCGGGGAGGTAGTGAGATAGAAGGAGGCAGGATGGCTTTGGACAACAAG  3774

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3775  ACCTCCCTGCTCAACACGCAGCCTCCACGTGCCTTTCCGGGGCCAAGAGCACGGGAATATAACCCGTATCCCTA  3848

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3849  CTCCGACACCATCAACACCTATGACAAGACGGCTCTGAAGGAAGCAGTGTTTGACGATGACATGGAGCAGCTCC  3922

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3923  GAGATGTGCCCATTGACCACTCAGACCTGGTGGCTGACTTGCTGAAAGAGCTATCTAACCACAACGAGCGTGTG  3996

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3997  GAGGAGCGGAAGGGCGCACTGCTGGAGTTGCTCAAGATCACCAGGGAGGACAGCCTGGGCGTGTGGGAGGAGCA  4070

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4071  CTTCAAGACCATCCTGCTGCTGCTGCTGGAAACTCTCGGAGACAAAGACCATTCCATTCGAGCTCTGGCACTGA  4144

Query    1  -----------------------------------------------------------------ATGAAGACT  9
                                                                             |||||||||
Sbjct 4145  GAGTTTTACGGGAAATTCTGAGAAACCAGCCAGCAAGATTCAAAAACTATGCAGAACTGACGATCATGAAGACT  4218

Query   10  CTGGAAGCCCACAAAGACTCCCATAAGGAGGTGGTGAGAGCGGCTGAGGAGGCTGCGTCCACACTGGCCAGTTC  83
            |||||||||||||||||||||||.||||||||||||||||||||.|||||.|||||.|||||.||.|||||.||
Sbjct 4219  CTGGAAGCCCACAAAGACTCCCACAAGGAGGTGGTGAGAGCGGCCGAGGAAGCTGCATCCACGCTAGCCAGCTC  4292

Query   84  CATCCACCCGGAGCAGTGCATCAAGGTGCTCTGCCCCATCATCCAGACGGCCGACTACCCCATCAACCTTGCTG  157
            .||||||||.||||||||||||||.|||||.||.||.|||||||||||.||||||||||||||||||||.||||
Sbjct 4293  AATCCACCCAGAGCAGTGCATCAAAGTGCTGTGTCCAATCATCCAGACAGCCGACTACCCCATCAACCTGGCTG  4366

Query  158  CCATCAAGATGCAGACCAAAGTCGTCGAGAGGATCGCAAAGGAGTCATTGCTGCAGCTCCTTGTCGACATCATC  231
            |.||||||||||||||.||.||.||.|||||||||.|.||||||||.||||||||||||||.||||||||||||
Sbjct 4367  CTATCAAGATGCAGACAAAGGTGGTGGAGAGGATCACCAAGGAGTCCTTGCTGCAGCTCCTCGTCGACATCATC  4440

Query  232  CCAGGCTTGCTGCAGGGTTATGACAACACCGAAAGTAGTGTGCGTAAGGCCAGCGTGTTTTGCTTAGTGGCAAT  305
            ||.|||.|||||||||||||.|||||||||||.||.|||||.||.||.|||||.||||||||||||||||||||
Sbjct 4441  CCCGGCCTGCTGCAGGGTTACGACAACACCGAGAGCAGTGTACGGAAAGCCAGTGTGTTTTGCTTAGTGGCAAT  4514

Query  306  TTATTCCGTAATCGGAGAAGACCTGAAACCTCACCTTGCACAGCTCACAGGGAGCAAGATGAAGCTACTAAACT  379
            .||||||||||||||||||||.||||||||||||||.|||||||||||.|||||||||||||||||.||.||||
Sbjct 4515  CTATTCCGTAATCGGAGAAGATCTGAAACCTCACCTCGCACAGCTCACGGGGAGCAAGATGAAGCTGCTGAACT  4588

Query  380  TATACATAAAGAGGGCCCAGACCACCAACAGCAACAGCAGCTCCTCCTCCGATGTCTCCACGCACAGC  447
            ||||.|||||||||||||||||.||||||||||||||||||||.|||||.|||||.|||||.||||||
Sbjct 4589  TATATATAAAGAGGGCCCAGACTACCAACAGCAACAGCAGCTCTTCCTCTGATGTGTCCACACACAGC  4656

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