Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_11720
Subject:
NM_001293301.1
Aligned Length:
4356
Identities:
402
Gaps:
3909

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGGAACCGAGAATGGAGTCCTGTCTGGCCCAGGTGCTGCAGAAGGATGTGGGAAAGCGGCTGCAGGTTGGCCA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GGAACTCATAGACTATTTCTCAGACAGACAGAAGTCTGCTGACCTTGAGCACGACCAGACCCTGTTGGATAAGC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  TTGTGGATGGACTCGCTACCTCTTGGGTGAACTCTAGCAATTACAAGGTGGTTCTCTTGGGCATGGACATCCTG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  TCGGCACTGGTGACTAGGCTGCAGGACCGGTTCAAGGCGCAAATCGGCACAGTGTTGCCAAGTCTAATAGACAG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  ACTGGGAGATGCTAAAGACTCCGTGAGGGAGCAAGACCAAACCCTGCTGCTAAAGATCATGGATCAAGCTGCTA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  ATCCCCAGTATGTGTGGGACAGAATGCTCGGAGGCTTCAAACACAAGAACTTCCGCACAAGAGAGGGCATCTGC  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  CTCTGCCTTATTGCAACACTCAATGCCTCTGGGGCCCAGACTCTAACACTAAGCAAGATTGTGCCACATATATG  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  TAACCTACTGGGAGATCCCAACAGCCAGGTTCGAGACGCAGCAATAAACAGTCTGGTGGAGATTTATAGACATG  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  TAGGTGAACGTGTGAGGGCAGACCTCAGTAAGAAAGGACTGCCACAGTCCCGGTTGAATGTCATTTTTACAAAA  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  TTTGATGAAGTCCAAAAGTCTGGAAATATGATACAGTCTGCAAATGAAAAAAATTTTGATGATGAAGATTCTGT  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  GGATGGCAACAGGCCTTCTTCTGCCAGCTCCTCATCATCCAAGGCCCCATCAAGTTCCCGGAGGAATGTTAACC  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  TGGGGACCACCCGTAGGCTCATGTCATCCAGTCTTGGATCTAAGTCTTCAGCTGCAAAAGAAGGCGCTGGTGCT  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  GTGGATGAAGAGGATTTTATTAAAGCCTTTGATGATGTACCTGTAGTGCAGATTTACTCCAGCCGAGACCTCGA  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  GGAATCCATAAACAAAATCAGAGAAATCCTGTCAGATGACAAGCATGACTGGGAGCAGAGAGTAAATGCTCTAA  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  AAAAGATTAGATCGTTACTCTTGGCTGGGGCTGCTGAGTACGATAACTTCTTTCAACACTTGCGTCTTCTGGAC  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  GGGGCCTTTAAACTCTCTGCTAAGGACCTGCGGTCTCAGGTAGTGCGGGAAGCTTGTATCACATTGGGGCATCT  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  GTCATCAGTTCTGGGAAATAAGTTTGATCATGGAGCTGAAGCCATTATGCCAACTATCTTTAATTTAATCCCGA  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  ACAGTGCCAAAATTATGGCTACTTCTGGTGTTGTAGCTGTTAGGCTAATCATTCGGCACACTCACATCCCTCGG  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  CTGATCCCTGTCATAACCAGCAACTGTACCTCTAAGTCTGTCGCCGTCAGAAGGCGCTGTTTTGAATTTTTAGA  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  TTTGCTTTTACAAGAATGGCAGACACATTCACTAGAAAGACATATATCAGTATTAGCTGAAACAATAAAGAAAG  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  GAATACACGACGCTGATTCTGAAGCGAGAATAGAAGCCAGGAAGTGCTACTGGGGTTTCCACAGTCACTTCAGC  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  CGAGAAGCAGAACACCTGTACCACACTTTGGAGTCCTCGTATCAGAAGGCCCTACAGTCCCACTTGAAGAACTC  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  GGACAGCATCGTGTCTCTGCCCCAGTCAGACCGATCCTCTTCCAGCTCTCAAGAGAGTCTCAACCGGCCACTTT  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  CAGCCAAAAGAAGTCCCACTGGCAGCACTGCATCCAGAGGCTCTACAGTTAGTACCAAATCTGTGTCGACGACA  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  GGATCTCTCCAGCGATCTCGAAGTGATATTGATGTGAACGCAGCAGCCAGTGCCAAATCCAAAGTCTCCTCATC  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  CTCAGGATCCCCCGCCTTCAGCTCTGCAGCAGCACTGCCCCCAGGATCCTATGCGTCCCTAGGTCGGATCCGCA  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  CGAGACGGCAGAGCTCGGGGAGCACCACCAATGTCGCCTCCACACCCTCCGACAGTCGGGGCCGCAGTCGCGCC  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  AAAGTGGTTTCACAGTCTCAGCCTGGCAGCCGGTCAAGTTCCCCTGGGAAGCTTTTGGGAAGTGGACTTGCTGG  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  GGGTTCCTCCAGAGGCCCACCGGTAACACCATCCTCAGAAAAACGGAGCAAGATCCCCAGGAGTCAGGGATGTA  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  GCCGAGAAACAAGTCCTAACCGGATTGGATTAGATCGGTTTGGGCTGGGCCAGTCAGGACGAATCCCTGGTTCT  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  GTGAACGCCATGAGAGTCTTGAGTACCAGCACTGACCTGGAAGCAGCAGTGGCTGACGCTCTGAAGAAGCCTGT  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  GAGAAGGAGATACGAGCCCTATGGAATGTACTCTGATGATGATGCCAACAGTGATGCCTCCAGCGTGTGCTCTG  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  AGCGCTCATATGGCTCCAGGAATGGTGGCATTCCCCATTATCTGCGGCAGACTGAAGATGTAGCAGAGGTTCTC  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  AACCATTGTGCCAGTTCCAACTGGTCAGAACGGAAAGAGGGGCTCCTGGGCCTGCAGAACTTACTGAAGAGCCA  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  AAGAACACTGAGTCGAGTAGAATTGAAGAGACTGTGTGAGATTTTCACCCGAATGTTTGCCGACCCTCACAGCA  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  AGAGAGTTTTCAGTATGTTTTTGGAGACCCTCGTGGATTTTATAATCATTCATAAGGATGACTTGCAAGACTGG  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  CTCTTCGTCCTTCTCACACAACTACTTAAGAAAATGGGAGCAGACTTACTTGGATCTGTGCAAGCAAAAGTTCA  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  GAAGGCTCTCGATGTCACCAGGGATTCCTTTCCATTTGATCAACAATTTAACATTTTGATGAGATTTATTGTGG  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  ATCAGACTCAAACTCCAAACCTCAAGGTCAAAGTAGCAATCCTGAAATACATCGAATCTCTAGCCAGACAGATG  2886

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2887  GACCCCACAGATTTTGTAAATTCCAGCGAAACAAGACTAGCTGTTTCTAGGATCATAACATGGACTACAGAACC  2960

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2961  AAAGAGTTCAGACGTGAGAAAGGCAGCACAAATTGTGCTCATCTCTCTGTTTGAACTGAACACGCCTGAATTTA  3034

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3035  CCATGTTACTTGGTGCCTTGCCAAAAACATTCCAGGATGGTGCCACCAAACTCCTGCATAACCACCTCAAGAAC  3108

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3109  TCCAGTAACACCGGTGTGGGATCTCCAAGCAATACAATTGGCCGGACACCTTCCCGCCACCCCAGCAGCAGGAC  3182

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3183  CAGCCCCCTGACCTCACCCACCAACTGTTCCCATGGGGGACTATCTCCAAGCATGCTGGACTATGATACAGAGA  3256

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3257  ACCTGAACTCTGAAGAAATCTACAGCTCTTTGCGTGGAGTTACAGAAGCCATTGAAAAGTTCAGCTTCCGAAGC  3330

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3331  CAGGAGGATCTAAATGAGCCAATCAAACGAGATGGCAAGAAGGATTGTGATATCGTGTCCCGAGATGGGGGAGC  3404

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3405  AGCCTCACCTGCCACCGAGGGCCGGGGAGGTAGTGAGATAGAAGGAGGCAGGATGGCTTTGGACAACAAGACCT  3478

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3479  CCCTGCTCAACACGCAGCCTCCACGTGCCTTTCCGGGGCCAAGAGCACGGGAATATAACCCGTATCCCTACTCC  3552

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3553  GACACCATCAACACCTATGACAAGACGGCTCTGAAGGAAGCAGTGTTTGACGATGACATGGAGCAGCTCCGAGA  3626

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3627  TGTGCCCATTGACCACTCAGACCTGGTGGCTGACTTGCTGAAAGAGCTATCTAACCACAACGAGCGTGTGGAGG  3700

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3701  AGCGGAAGGGCGCACTGCTGGAGTTGCTCAAGATCACCAGGGAGGACAGCCTGGGCGTGTGGGAGGAGCACTTC  3774

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3775  AAGACCATCCTGCTGCTGCTGCTGGAAACTCTCGGAGACAAAGACCATTCCATTCGAGCTCTGGCACTGAGAGT  3848

Query    1  -------------------------------------------------------------ATGAAGACTCTGG  13
                                                                         |||||||||||||
Sbjct 3849  TTTACGGGAAATTCTGAGAAACCAGCCAGCAAGATTCAAAAACTATGCAGAACTGACGATCATGAAGACTCTGG  3922

Query   14  AAGCCCACAAAGACTCCCATAAGGAGGTGGTGAGAGCGGCTGAGGAGGCTGCGTCCACACTGGCCAGTTCCATC  87
            |||||||||||||||||||.||||||||||||||||||||.|||||.|||||.|||||.||.|||||.||.|||
Sbjct 3923  AAGCCCACAAAGACTCCCACAAGGAGGTGGTGAGAGCGGCCGAGGAAGCTGCATCCACGCTAGCCAGCTCAATC  3996

Query   88  CACCCGGAGCAGTGCATCAAGGTGCTCTGCCCCATCATCCAGACGGCCGACTACCCCATCAACCTTGCTGCCAT  161
            |||||.||||||||||||||.|||||.||.||.|||||||||||.||||||||||||||||||||.|||||.||
Sbjct 3997  CACCCAGAGCAGTGCATCAAAGTGCTGTGTCCAATCATCCAGACAGCCGACTACCCCATCAACCTGGCTGCTAT  4070

Query  162  CAAGATGCAGACCAAAGTCGTCGAGAGGATCGCAAAGGAGTCATTGCTGCAGCTCCTTGTCGACATCATCCCAG  235
            ||||||||||||.||.||.||.|||||||||.|.||||||||.||||||||||||||.||||||||||||||.|
Sbjct 4071  CAAGATGCAGACAAAGGTGGTGGAGAGGATCACCAAGGAGTCCTTGCTGCAGCTCCTCGTCGACATCATCCCCG  4144

Query  236  GCTTGCTGCAGGGTTATGACAACACCGAAAGTAGTGTGCGTAAGGCCAGCGTGTTTTGCTTAGTGGCAATTTAT  309
            ||.|||||||||||||.|||||||||||.||.|||||.||.||.|||||.||||||||||||||||||||.|||
Sbjct 4145  GCCTGCTGCAGGGTTACGACAACACCGAGAGCAGTGTACGGAAAGCCAGTGTGTTTTGCTTAGTGGCAATCTAT  4218

Query  310  TCCGTAATCGGAGAAGACCTGAAACCTCACCTTGCACAGCTCACAGGGAGCAAGATGAAGCTACTAAACTTATA  383
            |||||||||||||||||.||||||||||||||.|||||||||||.|||||||||||||||||.||.||||||||
Sbjct 4219  TCCGTAATCGGAGAAGATCTGAAACCTCACCTCGCACAGCTCACGGGGAGCAAGATGAAGCTGCTGAACTTATA  4292

Query  384  CATAAAGAGGGCCCAGACCACCAACAGCAACAGCAGCTCCTCCTCCGATGTCTCCACGCACAGC  447
            .|||||||||||||||||.||||||||||||||||||||.|||||.|||||.|||||.||||||
Sbjct 4293  TATAAAGAGGGCCCAGACTACCAACAGCAACAGCAGCTCTTCCTCTGATGTGTCCACACACAGC  4356

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