Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_11720
Subject:
XM_017003660.1
Aligned Length:
4667
Identities:
414
Gaps:
4231

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGGAGCCTCGCATGGAGTCCTGCCTGGCGCAGGTGTTGCAGAAGGATGTGGGGAAACGATTGCAGGTTGGCCA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  AGAACTGATAGACTATTTCTCAGACAAACAGAAGTCTGCTGACCTTGAGCATGACCAGACCATGTTAGATAAAC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  TTGTGGATGGACTTGCTACCTCTTGGGTGAACTCTAGCAATTACAAGGTGGTTCTGCTGGGCATGGACATCCTG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  TCCGCCCTGGTGACCCGGCTGCAGGATCGGTTCAAGGCGCAGATCGGCACAGTGCTGCCAAGTCTAATAGACAG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  ACTAGGAGATGCTAAAGACTCTGTGAGGGAGCAGGACCAAACTCTGCTGCTAAAGATCATGGATCAAGCTGCTA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  ATCCCCAGTACGTATGGGACAGAATGCTTGGAGGCTTCAAACACAAGAATTTCCGTACTCGAGAAGGCATCTGT  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  CTCTGCCTTATAGCAACACTCAATGCCTCTGGAGCACAGACTTTAACACTAAGCAAGATTGTGCCACATATATG  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  CAACTTACTTGGAGATCCAAACAGCCAGGTTCGAGATGCAGCAATAAACAGCTTAGTGGAAATTTACAGACATG  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  TAGGAGAACGTGTGAGGGCAGATCTCAGTAAAAAAGGATTGCCACAGTCCCGGTTGAATGTAATTTTTACAAAA  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  TTTGATGAAGTCCAGAAATCTGGAAACATGATACAATCTGCAAATGATAAAAATTTCGACGATGAAGATTCTGT  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  GGATGGTAACAGACCTTCCTCTGCTAGTTCTACATCATCCAAGGCTCCACCAAGTTCTCGGAGAAACGTTGGAA  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  TGGGAACCACCCGCCGGCTTGGTTCATCCACCCTTGGATCCAAGTCTTCAGCTGCAAAAGAAGGAGCTGGTGCT  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  GTTGATGAAGAGGATTTTATTAAAGCATTTGATGATGTACCTGTAGTACAGATTTATTCCAGCCGAGACCTTGA  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  GGAATCCATAAACAAAATTAGGGAAATATTATCTGATGACAAGCATGATTGGGAGCAGAGAGTAAATGCTCTAA  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  AAAAGATTAGATCTTTACTTTTGGCTGGTGCTGCTGAGTATGATAACTTCTTTCAACATTTGCGTCTTTTGGAT  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  GGAGCCTTTAAACTCTCTGCTAAGGACCTGCGGTCTCAGGTAGTGCGGGAGGCTTGTATCACGTTGGGGCATCT  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  GTCATCAGTTCTGGGGAATAAGTTTGACCATGGAGCTGAAGCCATTATGCCAACTATCTTTAATTTAATTCCAA  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  ACAGTGCCAAAATTATGGCCACATCTGGTGTTGTAGCTGTTAGGTTAATTATTCGGCACACACACATCCCTAGG  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  TTAATACCTGTCATAACAAGCAACTGTACCTCTAAGTCTGTCGCAGTTAGAAGGCGCTGTTTTGAATTTTTAGA  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  TTTGCTTTTACAAGAATGGCAGACACATTCACTAGAACGACACATATCAGTATTAGCTGAAACAATAAAGAAGG  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  GAATACATGATGCTGATTCCGAAGCAAGAATAGAAGCCAGAAAATGTTACTGGGGTTTCCACAGTCACTTCAGC  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  AGAGAAGCAGAGCACTTGTACCACACCTTGGAGTCCTCCTACCAGAAAGCCCTGCAGTCCCACCTGAAGAACTC  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  AGACAGCATAGTGTCTCTGCCTCAGTCAGACCGCTCATCTTCCAGCTCTCAAGAGAGTCTAAATCGTCCGCTGT  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  CTGCCAAAAGAAGTCCTACTGGAAGTACCACATCTAGAGCTTCTACAGTTAGTACCAAATCTGTGTCAACGACT  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  GGGTCCCTCCAGCGATCTCGAAGTGATATTGATGTGAACGCAGCAGCCAGTGCCAAATCCAAAGTCTCCTCATC  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  TTCGGGCACGACGCCTTTCAGCTCTGCAGCAGCTTTGCCTCCAGGGTCATACGCATCCTTAGAGTCCAGACACA  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  TGAGGGAAGACATGGAGTACATAGGCCTGGACTCAGATGGTACTACCACTAAAGCGGAGGGTCGGATCCGCACA  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  AGACGGCAAAGCTCTGGGAGTGCCACCAACGTCGCCTCTACACCTGATAACCGGGGCCGCAGTCGCGCTAAAGT  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  GGTTTCACAGTCCCAGCGATCCAGATCTGCTAATCCTGCTGGTGCTGGCAGCCGGTCAAGTTCCCCAGGAAAAT  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  TGTTGGGAAGTGGTTATGGTGGACTTACTGGGGGCTCCTCACGAGGCCCACCTGTGACACCGTCTTCAGAAAAG  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  CGAAGCAAGATTCCCAGGAGCCAGGGATGTAGCCGGGAAACAAGTCCAAACCGAATAGGATTAGATCGGTTTGG  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  GCTTGGCCAGCCAGGAAGAATACCTGGTTCTGTGAATGCCATGAGAGTTCTGAGCACAAGTACAGATCTTGAAG  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  CTGCTGTTGCTGATGCTTTGAAGAAGCCTGTGAGGAGGAGATATGAGCCGTATGGGATGTATTCTGACGATGAT  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  GCCAACAGTGATGCCTCAAGTGTTTGCTCTGAGCGCTCATATGGCTCCAGGAATGGTGGCATTCCCCATTATCT  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  GCGGCAGACTGAGGATGTAGCAGAAGTTCTCAACCACTGTGCTAGTTCAAACTGGTCAGAAAGGAAAGAAGGGC  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  TTCTGGGCCTGCAGAACTTACTGAAGAGCCAAAGAACACTGAGTCGAGTTGAACTGAAAAGGTTGTGTGAGATC  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  TTCACTCGGATGTTTGCTGACCCTCATAGCAAGAGAGTTTTCAGTATGTTTTTGGAGACTCTTGTGGATTTTAT  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  AATAATTCATAAGGATGATTTACAAGACTGGCTTTTTGTTCTTCTCACACAATTACTTAAGAAAATGGGAGCAG  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  ATTTACTTGGATCTGTGCAAGCAAAAGTTCAAAAGGCTCTAGATGTCACAAGGGACTCCTTTCCATTTGATCAA  2886

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2887  CAATTTAACATTTTGATGAGATTTATTGTGGATCAAACTCAAACTCCAAACCTCAAGGTCAAAGTTGCAATCCT  2960

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2961  GAAATACATTGAGTCTCTGGCCAGACAGATGGATCCAACAGATTTTGTAAACTCTAGTGAGACAAGGCTTGCTG  3034

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3035  TTTCTAGAATCATAACCTGGACAACAGAACCAAAGAGTTCAGACGTGAGAAAGTCCTCACTTCAGCGTAGTCGA  3108

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3109  GTAGGTGAGGATTTCCCCACTAGGTCAGCTTCAACCTGCTCTGGTCCTGGAGAAGGAAACTTGGAAGAAAGTTG  3182

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3183  TAAACAGGCAGCACAGATTGTGCTAATCTCTCTGTTTGAATTGAATACTCCTGAATTTACCATGTTACTTGGTG  3256

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3257  CCTTGCCAAAAACATTCCAGGATGGTGCCACCAAACTCCTGCACAACCACCTCAAGAATTCCAGTAACACCAGT  3330

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3331  GTGGGCTCTCCAAGCAATACGATTGGCCGGACGCCCTCCCGACACACCAGCAGCAGGACCAGCCCCCTGACCTC  3404

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3405  ACCCACCAACTGTTCCCATGGGGGTCTGTCTCCAAGCATGCTGGACTATGATACAGAGAACCTGAACTCTGAAG  3478

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3479  AAATCTATAGTTCTCTACGTGGAGTTACAGAAGCCATTGAAAAGTTTAGTTTTCGAAGCCAAGAAGATCTGAAT  3552

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3553  GAGCCAATTAAACGAGATGGCAAAAAGGAGTGTGATATTGTGTCCCGCGATGGGGGCGCTGCCTCCCCTGCCAC  3626

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3627  TGAGGGCCGGGGGGGTAGTGAAGTAGAAGGAGGCCGGACAGCTCTGGATAACAAGACCTCACTACTCAACACCC  3700

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3701  AGCCTCCGCGCGCCTTCCCGGGGCCGCGGGCGCGAGACTACAACCCGTACCCCTACTCAGATGCCATCAACACC  3774

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3775  TACGACAAGACCGCCCTGAAAGAGGCTGTGTTCGATGACGACATGGAGCAGCTTCGAGACGTGCCCATCGACCA  3848

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3849  TTCTGACCTGGTGGCTGACCTTCTGAAAGAGCTGTCCAACCACAATGAGCGAGTGGAGGAACGGAAGGGAGCCC  3922

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3923  TGCTGGAGCTGCTCAAGATCACGCGGGAAGACAGCCTTGGTGTCTGGGAGGAGCACTTCAAGACCATTCTGCTC  3996

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3997  CTGCTGCTGGAGACCCTTGGAGACAAAGACCATTCAATTCGAGCACTGGCGTTAAGAGTTTTGAGGGAAATTCT  4070

Query    1  ----------------------------------------------ATGAAGACTCTGGAAGCCCACAAAGACT  28
                                                          ||||||||||||||||||||||||||||
Sbjct 4071  GAGAAATCAACCAGCAAGATTTAAAAACTACGCCGAGCTGACGATTATGAAGACTCTGGAAGCCCACAAAGACT  4144

Query   29  CCCATAAGGAGGTGGTGAGAGCGGCTGAGGAGGCTGCGTCCACACTGGCCAGTTCCATCCACCCGGAGCAGTGC  102
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4145  CCCATAAGGAGGTGGTGAGAGCGGCTGAGGAGGCTGCGTCCACACTGGCCAGTTCCATCCACCCGGAGCAGTGC  4218

Query  103  ATCAAGGTGCTCTGCCCCATCATCCAGACGGCCGACTACCCCATCAACCTTGCTGCCATCAAGATGCAGACCAA  176
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4219  ATCAAGGTGCTCTGCCCCATCATCCAGACGGCCGACTACCCCATCAACCTTGCTGCCATCAAGATGCAGACCAA  4292

Query  177  AGTCGTCGAGAGGATCGCAAAGGAGTCATTGCTGCAGCTCCTTGTCGACATCATCCCAGGCTTGCTGCAGGGTT  250
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4293  AGTCGTCGAGAGGATCGCAAAGGAGTCATTGCTGCAGCTCCTTGTCGACATCATCCCAGGCTTGCTGCAGGGTT  4366

Query  251  ATGACAACACCGAAAGTAGTGTGCGTAAGGCCAGCGTGTTTTGCTTAGTGGCAATTTATTCCGTAATCGGAGAA  324
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4367  ATGACAACACCGAAAGTAGTGTGCGTAAGGCCAGCGTGTTTTGCTTAGTGGCAATTTATTCCGTAATCGGAGAA  4440

Query  325  GACCTGAAACCTCACCTTGCACAGCTCACAGGGAGCAAG--ATGAA----GCTA-CTAAACTTATACATA-AAG  390
            |||||||||||||||||||||||||||||||||||||||  |||.|    |.|| ||...||.||||..| |..
Sbjct 4441  GACCTGAAACCTCACCTTGCACAGCTCACAGGGAGCAAGGTATGTATAGTGTTACCTGGGCTGATACGCACACC  4514

Query  391  AGGGCCCAGACCACC-------AACAGCA----ACAGCAGCTCCTCCTCCGATGTCTCCACGCACAGC------  447
            .||||.|.| |||.|       ||...||    ||.|||||||     ..|||   ||||  .||||.      
Sbjct 4515  TGGGCTCTG-CCAGCTTGTCATAAATCCATTTGACTGCAGCTC-----TGGAT---TCCA--GACAGGTTTTGT  4577

Query  448  --------------------------------------------------------------------------  447
                                                                                      
Sbjct 4578  TCATTGTGTTTTAGCTGGGCCTTATTTCTCCAAGAGGATTTTTCTAAATATAAAAATGAACTATACAGTGAAAT  4651

Query  448  -----  447
                 
Sbjct 4652  CAGTT  4656

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