Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_11720
Subject:
XM_017003680.2
Aligned Length:
3797
Identities:
414
Gaps:
3361

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGACTACTGGGAAAGATAAAAATTTCGACGATGAAGATTCTGTGGATGGTAACAGACCTTCCTCTGCTAGTTC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TACATCATCCAAGGCTCCACCAAGTTCTCGGAGAAACGTTGGAATGGGAACCACCCGCCGGCTTGGTTCATCCA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CCCTTGGATCCAAGTCTTCAGCTGCAAAAGAAGGAGCTGGTGCTGTTGATGAAGAGGATTTTATTAAAGCATTT  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GATGATGTACCTGTAGTACAGATTTATTCCAGCCGAGACCTTGAGGAATCCATAAACAAAATTAGGGAAATATT  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  ATCTGATGACAAGCATGATTGGGAGCAGAGAGTAAATGCTCTAAAAAAGATTAGATCTTTACTTTTGGCTGGTG  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CTGCTGAGTATGATAACTTCTTTCAACATTTGCGTCTTTTGGATGGAGCCTTTAAACTCTCTGCTAAGGACCTG  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  CGGTCTCAGGTAGTGCGGGAGGCTTGTATCACGTTGGGGCATCTGTCATCAGTTCTGGGGAATAAGTTTGACCA  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  TGGAGCTGAAGCCATTATGCCAACTATCTTTAATTTAATTCCAAACAGTGCCAAAATTATGGCCACATCTGGTG  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  TTGTAGCTGTTAGGTTAATTATTCGGCACACACACATCCCTAGGTTAATACCTGTCATAACAAGCAACTGTACC  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  TCTAAGTCTGTCGCAGTTAGAAGGCGCTGTTTTGAATTTTTAGATTTGCTTTTACAAGAATGGCAGACACATTC  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  ACTAGAACGACACATATCAGTATTAGCTGAAACAATAAAGAAGGGAATACATGATGCTGATTCCGAAGCAAGAA  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  TAGAAGCCAGAAAATGTTACTGGGGTTTCCACAGTCACTTCAGCAGAGAAGCAGAGCACTTGTACCACACCTTG  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  GAGTCCTCCTACCAGAAAGCCCTGCAGTCCCACCTGAAGAACTCAGACAGCATAGTGTCTCTGCCTCAGTCAGA  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  CCGCTCATCTTCCAGCTCTCAAGAGAGTCTAAATCGTCCGCTGTCTGCCAAAAGAAGTCCTACTGGAAGTACCA  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  CATCTAGAGCTTCTACAGTTAGTACCAAATCTGTGTCAACGACTGGGTCCCTCCAGCGATCTCGAAGTGATATT  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  GATGTGAACGCAGCAGCCAGTGCCAAATCCAAAGTCTCCTCATCTTCGGGCACGACGCCTTTCAGCTCTGCAGC  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  AGCTTTGCCTCCAGGGTCATACGCATCCTTAGGTCGGATCCGCACAAGACGGCAAAGCTCTGGGAGTGCCACCA  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  ACGTCGCCTCTACACCTGATAACCGGGGCCGCAGTCGCGCTAAAGTGGTTTCACAGTCCCAGCGATCCAGATCT  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  GCTAATCCTGCTGGTGCTGGCAGCCGGTCAAGTTCCCCAGGAAAATTGTTGGGAAGTGGTTATGGTGGACTTAC  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  TGGGGGCTCCTCACGAGGCCCACCTGTGACACCGTCTTCAGAAAAGCGAAGCAAGATTCCCAGGAGCCAGGGAT  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  GTAGCCGGGAAACAAGTCCAAACCGAATAGGATTAGATCGGTTTGGGCTTGGCCAGCCAGGAAGAATACCTGGT  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  TCTGTGAATGCCATGAGAGTTCTGAGCACAAGTACAGATCTTGAAGCTGCTGTTGCTGATGCTTTGAAGAAGCC  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  TGTGAGGAGGAGATATGAGCCGTATGGGATGTATTCTGACGATGATGCCAACAGTGATGCCTCAAGTGTTTGCT  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  CTGAGCGCTCATATGGCTCCAGGAATGGTGGCATTCCCCATTATCTGCGGCAGACTGAGGATGTAGCAGAAGTT  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  CTCAACCACTGTGCTAGTTCAAACTGGTCAGAAAGGAAAGAAGGGCTTCTGGGCCTGCAGAACTTACTGAAGAG  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  CCAAAGAACACTGAGTCGAGTTGAACTGAAAAGGTTGTGTGAGATCTTCACTCGGATGTTTGCTGACCCTCATA  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  GCAAGAGAGTTTTCAGTATGTTTTTGGAGACTCTTGTGGATTTTATAATAATTCATAAGGATGATTTACAAGAC  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  TGGCTTTTTGTTCTTCTCACACAATTACTTAAGAAAATGGGAGCAGATTTACTTGGATCTGTGCAAGCAAAAGT  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  TCAAAAGGCTCTAGATGTCACAAGGGACTCCTTTCCATTTGATCAACAATTTAACATTTTGATGAGATTTATTG  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  TGGATCAAACTCAAACTCCAAACCTCAAGGTCAAAGTTGCAATCCTGAAATACATTGAGTCTCTGGCCAGACAG  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  ATGGATCCAACAGATTTTGTAAACTCTAGTGAGACAAGGCTTGCTGTTTCTAGAATCATAACCTGGACAACAGA  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  ACCAAAGAGTTCAGACGTGAGAAAGGCAGCACAGATTGTGCTAATCTCTCTGTTTGAATTGAATACTCCTGAAT  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  TTACCATGTTACTTGGTGCCTTGCCAAAAACATTCCAGGATGGTGCCACCAAACTCCTGCACAACCACCTCAAG  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  AATTCCAGTAACACCAGTGTGGGCTCTCCAAGCAATACGATTGGCCGGACGCCCTCCCGACACACCAGCAGCAG  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  GACCAGCCCCCTGACCTCACCCACCAACTGTTCCCATGGGGGTCTGTCTCCAAGCATGCTGGACTATGATACAG  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  AGAACCTGAACTCTGAAGAAATCTATAGTTCTCTACGTGGAGTTACAGAAGCCATTGAAAAGTTTAGTTTTCGA  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  AGCCAAGAAGATCTGAATGAGCCAATTAAACGAGATGGCAAAAAGGAGTGTGATATTGTGTCCCGCGATGGGGG  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  CGCTGCCTCCCCTGCCACTGAGGGCCGGGGGGGTAGTGAAGTAGAAGGAGGCCGGACAGCTCTGGATAACAAGA  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  CCTCACTACTCAACACCCAGCCTCCGCGCGCCTTCCCGGGGCCGCGGGCGCGAGACTACAACCCGTACCCCTAC  2886

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2887  TCAGATGCCATCAACACCTACGACAAGACCGCCCTGAAAGAGGCTGTGTTCGATGACGACATGGAGCAGCTTCG  2960

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2961  AGACGTGCCCATCGACCATTCTGACCTGGTGGCTGACCTTCTGAAAGAGCTGTCCAACCACAATGAGCGAGTGG  3034

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3035  AGGAACGGAAGGGAGCCCTGCTGGAGCTGCTCAAGATCACGCGGGAAGACAGCCTTGGTGTCTGGGAGGAGCAC  3108

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3109  TTCAAGACCATTCTGCTCCTGCTGCTGGAGACCCTTGGAGACAAAGACCATTCAATTCGAGCACTGGCGTTAAG  3182

Query    1  ----------------------------------------------------------------ATGAAGACTC  10
                                                                            ||||||||||
Sbjct 3183  AGTTTTGAGGGAAATTCTGAGAAATCAACCAGCAAGATTTAAAAACTACGCCGAGCTGACGATTATGAAGACTC  3256

Query   11  TGGAAGCCCACAAAGACTCCCATAAGGAGGTGGTGAGAGCGGCTGAGGAGGCTGCGTCCACACTGGCCAGTTCC  84
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3257  TGGAAGCCCACAAAGACTCCCATAAGGAGGTGGTGAGAGCGGCTGAGGAGGCTGCGTCCACACTGGCCAGTTCC  3330

Query   85  ATCCACCCGGAGCAGTGCATCAAGGTGCTCTGCCCCATCATCCAGACGGCCGACTACCCCATCAACCTTGCTGC  158
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3331  ATCCACCCGGAGCAGTGCATCAAGGTGCTCTGCCCCATCATCCAGACGGCCGACTACCCCATCAACCTTGCTGC  3404

Query  159  CATCAAGATGCAGACCAAAGTCGTCGAGAGGATCGCAAAGGAGTCATTGCTGCAGCTCCTTGTCGACATCATCC  232
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3405  CATCAAGATGCAGACCAAAGTCGTCGAGAGGATCGCAAAGGAGTCATTGCTGCAGCTCCTTGTCGACATCATCC  3478

Query  233  CAGGCTTGCTGCAGGGTTATGACAACACCGAAAGTAGTGTGCGTAAGGCCAGCGTGTTTTGCTTAGTGGCAATT  306
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3479  CAGGCTTGCTGCAGGGTTATGACAACACCGAAAGTAGTGTGCGTAAGGCCAGCGTGTTTTGCTTAGTGGCAATT  3552

Query  307  TATTCCGTAATCGGAGAAGACCTGAAACCTCACCTTGCACAGCTCACAGGGAGCAAG--ATGAA----GCTA-C  373
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||.|    |.|| |
Sbjct 3553  TATTCCGTAATCGGAGAAGACCTGAAACCTCACCTTGCACAGCTCACAGGGAGCAAGGTATGTATAGTGTTACC  3626

Query  374  TAAACTTATACATA-AAGAGGGCCCAGACCACC-------AACAGCA----ACAGCAGCTCCTCCTCCGATGTC  435
            |...||.||||..| |...||||.|.| |||.|       ||...||    ||.|||||||     ..|||   
Sbjct 3627  TGGGCTGATACGCACACCTGGGCTCTG-CCAGCTTGTCATAAATCCATTTGACTGCAGCTC-----TGGAT---  3691

Query  436  TCCACGCACAGC--------------------------------------------------------------  447
            ||||  .||||.                                                              
Sbjct 3692  TCCA--GACAGGTTTTGTTCATTGTGTTTTAGCTGGGCCTTATTTCTCCAAGAGGATTTTTCTAAATATAAAAA  3763

Query  448  -----------------------  447
                                   
Sbjct 3764  TGAACTATACAGTGAAATCAGTT  3786

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.