Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_11931
Subject:
NM_001285480.1
Aligned Length:
1670
Identities:
778
Gaps:
802

Alignment

Query    1  ATGGCGACTGATACGTCTCAAGGTGAACTCGTCCATCCTAAGGCACTCCCACTTATAGTAGGAGCTCAGCTGAT  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  CCACGCGGACAAGTTAGGTGAGGTAGAAGATAGCACCATGCCGATTCGTCGAACTGTGAATTCTACCCGGGAAA  148
                                                 |||||.||.||||||.|.|||||||||||||||||||
Sbjct    1  -------------------------------------ATGCCTATACGTCGAGCCGTGAATTCTACCCGGGAAA  37

Query  149  CTCCTCCCAAAAGCAAGCTTGCTGAAGGGGAGGAAGAAAAGCCAGAACCAGACATAAGTTCAGAGGAATCTGTC  222
            ||||.|||||||||||.|||||||||||||||||||||||.||                               
Sbjct   38  CTCCACCCAAAAGCAAACTTGCTGAAGGGGAGGAAGAAAAACC-------------------------------  80

Query  223  TCCACTGTAGAAGAACAAGAGAATGAAACTCCACCTGCTACTTCGAGTGAGGCAGAGCAGCCAAAGGGGGAACC  296
                    |||||||||.||||||||.||||||||||||||.||.|||||||||||||||||.||||||||.||
Sbjct   81  --------AGAAGAACAGGAGAATGAGACTCCACCTGCTACATCCAGTGAGGCAGAGCAGCCCAAGGGGGAGCC  146

Query  297  TGAGAATGAAGAGAAGGAAG------AAAATAAGTCTTCTGAGGAAACCAAAAAGGATGAGAAAGATCAGTCTA  364
            |||||.||.|||||||||||      |.||.||||||.||||||||.||||||||||||||||.||||||||||
Sbjct  147  TGAGAGTGGAGAGAAGGAAGAGAACAACAACAAGTCTGCTGAGGAACCCAAAAAGGATGAGAAGGATCAGTCTA  220

Query  365  AAGAAAAGGAGAAGAAAGTGAAAAAAACAATTCCTTCCTGGGCTACCCTTTCTGCCAGCCAGCTAGCCAGGGCC  438
            |||||||||||||||||||||||||.||.||||||.|||||||.||.||.||||||||||||||||||||||||
Sbjct  221  AAGAAAAGGAGAAGAAAGTGAAAAAGACGATTCCTGCCTGGGCGACTCTCTCTGCCAGCCAGCTAGCCAGGGCC  294

Query  439  CAGAAACAAACACCGATGGCTTCTTCCCCACGTCCCAAGATGGATGCAATCTTAACTGAGGCCATTAAGGCATG  512
            ||||.||||||.||.||||||||.||||||||.|||||||||||.|||||||||||||||||||||||||||||
Sbjct  295  CAGAGACAAACCCCCATGGCTTCCTCCCCACGGCCCAAGATGGACGCAATCTTAACTGAGGCCATTAAGGCATG  368

Query  513  CTTCCAGAAGAGTGGTGCATCAGTGGTTGCTATTCGAAAATACATCATCCATAAGTATCCTTCTCTGGAGCTGG  586
            |||||||||||.|||.||.||.||||||||.||||||||.||||||||.||||||||.||.|||||||..||||
Sbjct  369  CTTCCAGAAGACTGGCGCCTCGGTGGTTGCGATTCGAAAGTACATCATTCATAAGTACCCGTCTCTGGGTCTGG  442

Query  587  AGAGAAGGGGTTATCTCCTTAAACAAGCACTGAAAAGAGAATTAAATAGAGGAGTCATCAAACAGGTTAAAGGA  660
            ||||||||||.|||||.||.||.|||||.|||||.|||||.|||||.|||||||||||||.||||||.||||||
Sbjct  443  AGAGAAGGGGCTATCTGCTCAAGCAAGCGCTGAAGAGAGAGTTAAACAGAGGAGTCATCAGACAGGTAAAAGGA  516

Query  661  AAAGGTGCTTCTGGAAGTTTTGTTGTGGTTCAGAAATCAAGAAAAACACCTCAGAAATCCAGAAACAGAAAGAA  734
            ||||||||.|||||.||||||||||||||.||||||||   ||||.|||||||||||||||.||||||||||||
Sbjct  517  AAAGGTGCATCTGGCAGTTTTGTTGTGGTCCAGAAATC---AAAACCACCTCAGAAATCCAAAAACAGAAAGAA  587

Query  735  TAGGAGCTCTGCAGTGGATCCAGAACCACAAGTAAAATTGGAGGATGTCCTCCCACTGGCCTTTACTCGCCTTT  808
               |.||||.||..|||||||||||||||||||||||.||||.|||||.|||||..||||.||||||||.||.|
Sbjct  588  ---GGGCTCGGCTCTGGATCCAGAACCACAAGTAAAACTGGAAGATGTTCTCCCGTTGGCTTTTACTCGGCTCT  658

Query  809  GTGAACCTAAAGAAGCTTCCTACAGTCTCATCAGGAAATATGTGTCTCAGTATTATCCTAAGCTTAGAGTGGAC  882
            ||||||||||||||||||||||||||||||||||||||||.||||||||||||||.||||||||.|||||||||
Sbjct  659  GTGAACCTAAAGAAGCTTCCTACAGTCTCATCAGGAAATACGTGTCTCAGTATTACCCTAAGCTCAGAGTGGAC  732

Query  883  ATCAGGCCTCAGCTGTTGAAGAACGCTCTGCAGAGAGCAGTAGAGAGGGGCCAGTTAGAACAGATAACTGGCAA  956
            ||||||||.|||.||||||||||.|||||||||.|||||||||||||.||||||.|.||.||||||||||||||
Sbjct  733  ATCAGGCCCCAGTTGTTGAAGAATGCTCTGCAGCGAGCAGTAGAGAGAGGCCAGCTCGAGCAGATAACTGGCAA  806

Query  957  AGGTGCTTCGGGGACATTCC------AGAAAT--GGGGTTTCGCC--------GTG------------------  996
            .|||||||||||||||||.|      ||||||  ||||....|||        |||                  
Sbjct  807  GGGTGCTTCGGGGACATTTCAGCTGAAGAAATCAGGGGAGAAGCCCCTGCTGGGTGGAAGCCTGATGGAATATG  880

Query  997  ---------------TTGC--CCAGG-------------------------CTACTCTTGAA-------CTCCT  1021
                           ||||  |||.|                         ||.||| ||||       .||||
Sbjct  881  CAATCTTGTCTGCCATTGCTGCCATGAACGAGCCTAAGACCTGCTCCACCACTGCTC-TGAAGAAGTATGTCCT  953

Query 1022  GGGTTCAG------------------------------------------------------------------  1029
            ||    ||                                                                  
Sbjct  954  GG----AGAACCACCCAGGGGCCAACTCTAACTATCAGATGCATTTGCTGAAAAAAACCCTGCAGAAATGTGAG  1023

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 1024  AAGAACGGGTGGCTGGAGCAGATCTCTGGGAAGGGGTTCAGCGGCACCTTCCAGCTGTCCTTCCCCTACTACCC  1097

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 1098  TAGCCCAGGAGTTCTATTTCCGAAGAAAGAATCCGGTGGCTCTGACGATGAAGATGAAGATGACGATGACGATG  1171

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 1172  AATCATCAGAAGACTCTGAGGATGAGGAACCACCACCCAAGAGGAGCTTACAGAAGAAAACACCAGCCAAGTCC  1245

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 1246  CAAGGGAAGACAGCCTCCATGAAGCAGAGAGGGTCGAAGCCTGCGCGGAAAGTCCCGGCTGCCCAGAGAGGGAA  1319

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 1320  AGTGAGGCCGCTGCCTAAGAAAGCTCCACCCAAGGCCAAGACCCCTGCCAGGAAAGCCAGACCCTCTCCCTCAG  1393

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 1394  TCATCAAGAAGCCTAGTGGGAGCTCCTCCAGAAAGCCCATAGCCAGTGCACGAAAGGAAGCGAAACTGCCCGGG  1467

Query 1030  ------------------------------------------  1029
                                                      
Sbjct 1468  AAGGGCAAATCTGCCATGAAGAAGTCTTTCAAGACAAAAAAG  1509

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