Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_11931
Subject:
XR_003954880.1
Aligned Length:
2170
Identities:
878
Gaps:
1171

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AGCCACGCTCTGCCTCCCGTCGTCCGCCGTTCCCCCCCACCTCCCCCACGAGCGCCCTGTCGCGCCCCTGCGCG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CCCGCCCGGGGACCCACTTGGCGGGCGCGCGCGGGGGCGGGGCCGGCGCGGGGGCGCGCGCGTGAGGCCGCGGG  148

Query    1  ---------ATGGCGACTGATACGTCTCAAGGTGAACTCGTCCATCCT-AAGGCAC-------TCCCACTTATA  57
                     ..||||.|.||    .|||  |||      |.||..||| .||| ||       ||.|     .|
Sbjct  149  CAGGGGGGCGGGGCGGCAGA----GCTC--GGT------GCCCGGCCTGGAGG-ACAGCGGTGTCGC-----GA  204

Query   58  GTAGGAGCTCAGCTGATCC---------------------------ACGCGGAC-----AAGTTAGGTGAGGTA  99
            ||.||.|.|| |.||.|||                           ||||||.|     |..|.||...|.|.|
Sbjct  205  GTCGGCGATC-GGTGGTCCGCGGCAACGCCGAGAGGCCGTACGGGAACGCGGGCGCCGGAGCTCAGAGAAAGCA  277

Query  100  GAAGATAGCACCATGCCGATTCGTCGAACTGTGAATTCTACCCGGGAAACTCCTCCCAAAAGCAAGCTTGCTGA  173
            |||||||.|||||||||.||.||||||.|.|||||||||||||||||||||||.|||||||||||.||||||||
Sbjct  278  GAAGATACCACCATGCCTATACGTCGAGCCGTGAATTCTACCCGGGAAACTCCACCCAAAAGCAAACTTGCTGA  351

Query  174  AGGGGAGGAAGAAAAGCCAGAACCAGACATAAGTTCAGAGGAATCTGTCTCCACTGTAGAAGAACAAGAGAATG  247
            |||||||||||||||.|||||||||||...||||||||||||||||.||||.||||||||||||||.|||||||
Sbjct  352  AGGGGAGGAAGAAAAACCAGAACCAGATGGAAGTTCAGAGGAATCTATCTCTACTGTAGAAGAACAGGAGAATG  425

Query  248  AAACTCCACCTGCTACTTCGAGTGAGGCAGAGCAGCCAAAGGGGGAACCTGAGAATGAAGAGAAGGAAG-----  316
            |.||||||||||||||.||.|||||||||||||||||.||||||||.|||||||.||.|||||||||||     
Sbjct  426  AGACTCCACCTGCTACATCCAGTGAGGCAGAGCAGCCCAAGGGGGAGCCTGAGAGTGGAGAGAAGGAAGAGAAC  499

Query  317  -AAAATAAGTCTTCTGAGGAAACCAAAAAGGATGAGAAAGATCAGTCTAAAGAAAAGGAGAAGAAAGTGAAAAA  389
             |.||.||||||.||||||||.||||||||||||||||.|||||||||||||||||||||||||||||||||||
Sbjct  500  AACAACAAGTCTGCTGAGGAACCCAAAAAGGATGAGAAGGATCAGTCTAAAGAAAAGGAGAAGAAAGTGAAAAA  573

Query  390  AACAATTCCTTCCTGGGCTACCCTTTCTGCCAGCCAGCTAGCCAGGGCCCAGAAACAAACACCGATGGCTTCTT  463
            .||.||||||.|||||||.||.||.||||||||||||||||||||||||||||.||||||.||.||||||||.|
Sbjct  574  GACGATTCCTGCCTGGGCGACTCTCTCTGCCAGCCAGCTAGCCAGGGCCCAGAGACAAACCCCCATGGCTTCCT  647

Query  464  CCCCACGTCCCAAGATGGATGCAATCTTAACTGAGGCCATTAAGGCATGCTTCCAGAAGAGTGGTGCATCAGTG  537
            |||||||.|||||||||||.||||||||||||||||||||||||||||||||||||||||.|||.||.||.|||
Sbjct  648  CCCCACGGCCCAAGATGGACGCAATCTTAACTGAGGCCATTAAGGCATGCTTCCAGAAGACTGGCGCCTCGGTG  721

Query  538  GTTGCTATTCGAAAATACATCATCCATAAGTATCCTTCTCTGGAGCTGGAGAGAAGGGGTTATCTCCTTAAACA  611
            |||||.||||||||.||||||||.||||||||.||.|||||||..||||||||||||||.|||||.||.||.||
Sbjct  722  GTTGCGATTCGAAAGTACATCATTCATAAGTACCCGTCTCTGGGTCTGGAGAGAAGGGGCTATCTGCTCAAGCA  795

Query  612  AGCACTGAAAAGAGAATTAAATAGAGGAGTCATCAAACAGGTTAAAGGAAAAGGTGCTTCTGGAAGTTTTGTTG  685
            |||.|||||.|||||.|||||.|||||||||||||.||||||.||||||||||||||.|||||.||||||||||
Sbjct  796  AGCGCTGAAGAGAGAGTTAAACAGAGGAGTCATCAGACAGGTAAAAGGAAAAGGTGCATCTGGCAGTTTTGTTG  869

Query  686  TGGTTCAGAAATCAAGAAAAACACCTCAGAAATCCAGAAACAGAAAGAATAGGAGCTCTGCAGTGGATCCAGAA  759
            ||||.||||||||   ||||.|||||||||||||||.||||||||||||   |.||||.||..|||||||||||
Sbjct  870  TGGTCCAGAAATC---AAAACCACCTCAGAAATCCAAAAACAGAAAGAA---GGGCTCGGCTCTGGATCCAGAA  937

Query  760  CCACAAGTAAAATTGGAGGATGTCCTCCCACTGGCCTTTACTCGCCTTTGTGAACCTAAAGAAGCTTCCTACAG  833
            ||||||||||||.||||.|||||.|||||..||||.||||||||.||.||||||||||||||||||||||||||
Sbjct  938  CCACAAGTAAAACTGGAAGATGTTCTCCCGTTGGCTTTTACTCGGCTCTGTGAACCTAAAGAAGCTTCCTACAG  1011

Query  834  TCTCATCAGGAAATATGTGTCTCAGTATTATCCTAAGCTTAGAGTGGACATCAGGCCTCAGCTGTTGAAGAACG  907
            |||||||||||||||.||||||||||||||.||||||||.|||||||||||||||||.|||.||||||||||.|
Sbjct 1012  TCTCATCAGGAAATACGTGTCTCAGTATTACCCTAAGCTCAGAGTGGACATCAGGCCCCAGTTGTTGAAGAATG  1085

Query  908  CTCTGCAGAGAGCAGTAGAGAGGGGCCAGTTAGAACAGATAACTGGCAAAGGTGCTTCGGGGACATTCC-----  976
            ||||||||.|||||||||||||.||||||.|.||.||||||||||||||.|||||||||||||||||.|     
Sbjct 1086  CTCTGCAGCGAGCAGTAGAGAGAGGCCAGCTCGAGCAGATAACTGGCAAGGGTGCTTCGGGGACATTTCAGCTG  1159

Query  977  -AGAAAT--GGGGTTTCGCC--------GTG---------------------------------TTGC--CCAG  1004
             ||||||  ||||....|||        |||                                 ||||  |||.
Sbjct 1160  AAGAAATCAGGGGAGAAGCCCCTGCTGGGTGGAAGCCTGATGGAATATGCAATCTTGTCTGCCATTGCTGCCAT  1233

Query 1005  G-------------------------CTACTCTTGAA-------CTCCTGGGTTCAG-----------------  1029
            |                         ||.||| ||||       .||||||    ||                 
Sbjct 1234  GAACGAGCCTAAGACCTGCTCCACCACTGCTC-TGAAGAAGTATGTCCTGG----AGAACCACCCAGGGGCCAA  1302

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 1303  CTCTAACTATCAGATGCATTTGCTGAAAAAAACCCTGCAGAAATGTGAGAAGAACGGGTGGCTGGAGCAGATCT  1376

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 1377  CTGGGAAGGGGTTCAGCGGCACCTTCCAGCTGTCCTTCCCCTACTACCCTAGCCCAGGAGTTCTATTTCCGAAG  1450

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 1451  AAAGAATCCGGTGGCTCTGACGATGAAGATGAAGATGACGATGACGATGAATCATCAGAAGACTCTGAGGATGA  1524

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 1525  GGAACCACCACCCAAGAGGAGGTGTGATCTGAGGAAGCTACTGAGACGGATGATAAATCTCTCAGAGCTGAAAA  1598

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 1599  TGGAGTTGGGCTTGTAATTCCAGATATTAAGGAGGAGACTGAAGCAGAGCTGGAAGTTGATGGCCAGTGGGGGC  1672

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 1673  AGCTTATTGAAACACCATCTCAAAAAGTAAAACAAGGCCTGGGGACATAGCTTACAGAAGAAAACACCAGCCAA  1746

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 1747  GTCCCAAGGGAAGACAGCCTCCATGAAGCAGAGAGGGTCGAAGCCTGCGCGGAAAGTCCCGGCTGCCCAGAGAG  1820

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 1821  GGAAAGTGAGGCCGCTGCCTAAGAAAGCTCCACCCAAGGCCAAGACCCCTGCCAGGAAAGCCAGACCCTCTCCC  1894

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 1895  TCAGTCATCAAGAAGCCTAGTGGGAGCTCCTCCAGAAAGCCCATAGCCAGTGCACGAAAGGAAGCGAAACTGCC  1968

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 1969  CGGGAAGGGCAAATCTGCCATGAAGAAGTCTTTCAAGACAAAAAAGTAAATTTTATAGGGAAAAGGGTATCATG  2042

Query 1030  --------------------------------------------------------------------------  1029
                                                                                      
Sbjct 2043  ATTGAATTCAGAATCTTACTTTATAAGGTCAGTGTGCATTTGTTCTAGTTATAATGCTTTTAAATTGTACTTTT  2116

Query 1030  ------------------------  1029
                                    
Sbjct 2117  TCTTCCCATGTGAGCATTGTGGGA  2140

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