Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_12101
Subject:
NR_144331.1
Aligned Length:
4151
Identities:
1502
Gaps:
2649

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ACGTGACGCCACTGTCGCTGCGACGATAAGGCCTGGCGTTATTGCTTAGAGGCGGCTACCTGGAGCCGGAAGCG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CGGCTGCAGCAGGGCGAGGCTCCAGGTGGGGTCGGTTCCGCATCCAGCCTAGCGTGTCCACGATGCGGCTGGGC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  TCCGGGACTTTCGCTACCTGTTGCGTAGCGATCGAGGTGCTAGGGATCGCGGTCTTCCTTCGGGGATTCTTCCC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GGCTCCCGTTCGTTCCTCTGCCAGAGCGGAACACGGAGCGGAGCCCCCAGCGCCCGAACCCTCGGCTGGTACGG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  ACCCCTCCCCGGCGTCTCCGCTCCCCTGACCCCACATCCCCTAGAAGACCTTTTTTCTGAGCCTCGCTGCTCGG  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  ATTTCTTCTCGGCGCTCCCCGGTGGTCTCTTCCATTATGGTCCCCACCTCAGAAATTTTTTTTAACCGCTCCAG  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  CGTCTCTTTTCTGTATTCTTACAACTTTGTGGCAACCACCTCTACTGGCCCCACTTCGACCTTCCTTCCTGATC  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  ACCACAAAGAGCCAGTTCTAACTGGACCACGCTGCCACCACCTCTCTTCAGTAAAGTTGTTATTGTTCTGATAG  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  ATGCCTTGAGAGATGATTTTGTGTTTGGGTCAAAGGGTGTGAAATTTATGCCCTACACAACTTACCTTGTGGAA  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  AAAGGAGCATCTCACAGTTTTGTGGCTGAAGCAAAGCCACCTACAGTTACTATGCCTCGAATCAAGGCATTGAT  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  GACGGGGAGCCTTCCTGGCTTTGTCGACGTCATCAGGAACCTCAATTCTCCTGCACTGCTGGAAGACAGTGTGA  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  TAAGACAAGCAAAAGCAGCTGGAAAAAGAATAGTCTTTTATGGAGATGAAACCTGGGTTAAATTATTCCCAAAG  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  CATTTTGTGGAATATGATGGAACAACCTCATTTTTCGTGTCAGATTACACAGAGGTGGATAATAATGTCACGAG  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  GCATTTGGATAAAGTATTAAAAAGAGGAGATTGGGACATATTAATCCTCCACTACCTGGGGCTGGACCACATTG  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  GCCACATTTCAGGGCCCAACAGCCCCCTGATTGGGCAGAAGCTGAGCGAGATGGACAGCGTGCTGATGAAGATC  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  CACACCTCACTGCAGTCGAAGGAGAGAGAGACGCCTTTACCCAATTTGCTGGTTCTTTGTGGTGACCATGGCAT  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  GTCTGAAACAGGAAGTCACGGGGCCTCCTCCACCGAGGAGGTGAATACACCTCTGATTTTAATCAGTTCTGCGT  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  TTGAAAGGAAACCCGGTGATATCCGACATCCAAAGCACGTCCAACAGACGGATGTGGCTGCGACACTGGCGATA  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  GCACTTGGCTTACCGATTCCAAAAGACAGTGTAGGGAGCCTCCTATTCCCAGTTGTGGAAGGAAGACCAATGAG  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  AGAGCAGTTGAGATTTTTACATTTGAATACAGTGCAGCTTAGTAAACTGTTGCAAGAGAATGTGCCGTCATATG  1480

Query    1  -----------------------------ATGTCAGAAAGATTGCATGGGAACTGGATCAGACTGTACTTGGAG  45
                                         |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  AAAAAGATCCTGGGTTTGAGCAGTTTAAAATGTCAGAAAGATTGCATGGGAACTGGATCAGACTGTACTTGGAG  1554

Query   46  GAAAAGCATTCAGAAGTCCTATTCAACCTGGGCTCCAAGGTTCTCAGGCAGTACCTGGATGCTCTGAAGACGCT  119
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555  GAAAAGCATTCAGAAGTCCTATTCAACCTGGGCTCCAAGGTTCTCAGGCAGTACCTGGATGCTCTGAAGACGCT  1628

Query  120  GAGCTTGTCCCTGAGTGCACAAGTGGCCCAGTACGACATCTATTCGATGATGGTGGGGACTGTCGTGGTTTTGG  193
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629  GAGCTTGTCCCTGAGTGCACAAGTGGCCCAGTACGACATCTATTCGATGATGGTGGGGACTGTCGTGGTTTTGG  1702

Query  194  AGGTTCTCACCCTGCTCCTGCTCAGCGTCCCACAGGCACTGCGCAGAAAGGCTGAGCTGGAAGTCCCACTGTCA  267
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703  AGGTTCTCACCCTGCTCCTGCTCAGCGTCCCACAGGCACTGCGCAGAAAGGCTGAGCTGGAAGTCCCACTGTCA  1776

Query  268  TCTCCTGGGTTTTCTCTGCTCTTTTATTTGGTGATCCTGGTTCTTTCGGCCGTTCACGTCATTGTGTGCACCTC  341
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777  TCTCCTGGGTTTTCTCTGCTCTTTTATTTGGTGATCCTGGTTCTTTCGGCCGTTCACGTCATTGTGTGCACCTC  1850

Query  342  AGCTGAAAGTTCGTGCTACTTCTGTGGCCTCTCGTGGCTGGCGGCAGGTGGGGTGATGGTGCTGGCCTCGGCGC  415
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851  AGCTGAAAGTTCGTGCTACTTCTGTGGCCTCTCGTGGCTGGCGGCAGGTGGGGTGATGGTGCTGGCCTCGGCGC  1924

Query  416  TGCTGTGTGTGATTGTGTCTGTTCTGACCAACGTGCTCGTGGGTGGAAACACCCCAAGGAAGAACCCCATGCAT  489
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925  TGCTGTGTGTGATTGTGTCTGTTCTGACCAACGTGCTCGTGGGTGGAAACACCCCAAGGAAGAACCCCATGCAT  1998

Query  490  CCCAGCTCAAGGTGGTCAGAGCTAGACCTTCTTATTCTGTTGGGGACGGCGGGCCACGTCTTGAGCCTGGGCGC  563
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999  CCCAGCTCAAGGTGGTCAGAGCTAGACCTTCTTATTCTGTTGGGGACGGCGGGCCACGTCTTGAGCCTGGGCGC  2072

Query  564  CAGCAGCTTCGTGGAGGAGGAGCACCAGACCTGGTACTTCCTTGTGAACACCCTGTGTCTAGCTCTGAGCCAAG  637
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073  CAGCAGCTTCGTGGAGGAGGAGCACCAGACCTGGTACTTCCTTGTGAACACCCTGTGTCTAGCTCTGAGCCAAG  2146

Query  638  AAACCTACAGAAACTACTTTCTGGGAGATGACGGTGAGCCTCCGTGTGGCCTCTGTGTGGAACAAGGGCATGAC  711
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2147  AAACCTACAGAAACTACTTTCTGGGAGATGACGGTGAGCCTCCGTGTGGCCTCTGTGTGGAACAAGGGCATGAC  2220

Query  712  GGGGCCACAGCAGCGTGGCAGGACGGGCCTGGCTGTGATGTCCTGGAGCGAGACAAAGGCCACGGAAGCCCCTC  785
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2221  GGGGCCACAGCAGCGTGGCAGGACGGGCCTGGCTGTGATGTCCTGGAGCGAGACAAAGGCCACGGAAGCCCCTC  2294

Query  786  TACCTCCGAAGTGCTCAGAGGCCGCGAGAAGTGGATGGTGCTGGCCAGTCCGTGGCTAATACTGGCCTGCTGCC  859
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2295  TACCTCCGAAGTGCTCAGAGGCCGCGAGAAGTGGATGGTGCTGGCCAGTCCGTGGCTAATACTGGCCTGCTGCC  2368

Query  860  GGCTGCTGCGCTCCCTAAACCAGACAGGTGTGCAGTGGGCTCACCGGCCTGACCTCGGCCACTGGCTCACCAGC  933
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2369  GGCTGCTGCGCTCCCTAAACCAGACAGGTGTGCAGTGGGCTCACCGGCCTGACCTCGGCCACTGGCTCACCAGC  2442

Query  934  TCTGACCACAAAGCCGAGCTCTCTGTCCTGGCTGCCCTCTCCCTCCTCGTAGTTTTTGTGCTGGTGCAGAGGGG  1007
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2443  TCTGACCACAAAGCCGAGCTCTCTGTCCTGGCTGCCCTCTCCCTCCTCGTAGTTTTTGTGCTGGTGCAGAGGGG  2516

Query 1008  GTGCTCCCCTGTGTCCAAGGCTGCCCTGGCGCTGGGGCTGCTGGGCGTCTACTGCTACCGGGCGGCCATCGGGA  1081
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2517  GTGCTCCCCTGTGTCCAAGGCTGCCCTGGCGCTGGGGCTGCTGGGCGTCTACTGCTACCGGGCGGCCATCGGGA  2590

Query 1082  GTGTCCGGTTCCCGTGGCGGCCGGACAGCAAGGACATTTCCAAGGGTATTATTGAAGCTCGTTTTGTTTATGTC  1155
            |||||||||||||||||||||||||||||||||||||||||||                               
Sbjct 2591  GTGTCCGGTTCCCGTGGCGGCCGGACAGCAAGGACATTTCCAA-------------------------------  2633

Query 1156  TTTGTCCTTGGCATTCTGTTCACGGGCACCAAAGACTTACTTAAATCTCAAGTCATTGCTGCAGACTTCAAACT  1229
                                                                                      
Sbjct 2634  --------------------------------------------------------------------------  2633

Query 1230  CAAGACTGTAGGTTTATGGGAGATATATAGTGGATTAGTTCTTCTGGCAGCCTTGCTCTTTAGACCACATAATC  1303
                                                                                      
Sbjct 2634  --------------------------------------------------------------------------  2633

Query 1304  TTCCGGTCTTAGCATTTAGCCTCTTGATTCAGACTCTAATGACTAAATTCATCTGGAAGCCCCTGAGACACGAT  1377
                                                                                      
Sbjct 2634  --------------------------------------------------------------------------  2633

Query 1378  GCAGCTGAGATTACTGTGATGCATTATTGGTTTGGTCAAGCATTCTTCTATTTTCAGGGCAACTCCAACAACAT  1451
                                                                     |||||||||||||||||
Sbjct 2634  ---------------------------------------------------------GGCAACTCCAACAACAT  2650

Query 1452  TGCCACCGTGGACATCTCCGCAGGCTTCGTGGGCTTAGACACCTACGTGGAAATCCCAGCCGTGCTCCTGACAG  1525
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2651  TGCCACCGTGGACATCTCCGCAGGCTTCGTGGGCTTAGACACCTACGTGGAAATCCCAGCCGTGCTCCTGACAG  2724

Query 1526  CGTTTGGGACGTACGCAGGGCCTGTGCTGTGGGCCAGCCACTTAGTGCACTTCCTGAGCTCAGAAACACGCAGT  1599
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2725  CGTTTGGGACGTACGCAGGGCCTGTGCTGTGGGCCAGCCACTTAGTGCACTTCCTGAGCTCAGAAACACGCAGT  2798

Query 1600  GGTTCAGCACTGAGTCATGCTTGCTTCTGCTACGCACTGATTTGTTCTATTCCAGTTTTCACGTACATCGTTTT  1673
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2799  GGTTCAGCACTGAGTCATGCTTGCTTCTGCTACGCACTGATTTGTTCTATTCCAGTTTTCACGTACATCGTTTT  2872

Query 1674  GGTGACATCTCTGCGTTATCATTTATTTATATGGAGTGTATTTTCTCCAAAACTTCTCTACGAGGGAATGCACC  1747
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2873  GGTGACATCTCTGCGTTATCATTTATTTATATGGAGTGTATTTTCTCCAAAACTTCTCTACGAGGGAATGCACC  2946

Query 1748  TGCTCATTACAGCTGCTGTCTGTGTATTCTTCACGGCAATGGATCAAACCAGACTCACACAGTCT---------  1812
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         
Sbjct 2947  TGCTCATTACAGCTGCTGTCTGTGTATTCTTCACGGCAATGGATCAAACCAGACTCACACAGTCTTAGACTAAG  3020

Query 1813  --------------------------------------------------------------------------  1812
                                                                                      
Sbjct 3021  CTGAACACTGGAAAAATAATACATGCTTAAAGTCTGCTGTTATTCTAAAATGAAAGATATGAATTCAACAAAGT  3094

Query 1813  --------------------------------------------------------------------------  1812
                                                                                      
Sbjct 3095  TGATGGATAACTTTCTTTGACTGCTCTACCTGAATTTAGACTAAGCAGTAAATAGTTTAATAAAAGATCACTTT  3168

Query 1813  --------------------------------------------------------------------------  1812
                                                                                      
Sbjct 3169  AATATACAGTTTGTATCATATTTTCCCCCATTGACAATCACTCTAGAAGCTTCTGAACTTTTAATTTCCTCTGA  3242

Query 1813  --------------------------------------------------------------------------  1812
                                                                                      
Sbjct 3243  ATAAGCTATGGTGTGACCCAAATATGTGTGTTTAAATCAATGAATGAAAAGGTTCTGGACTTTGTTAGAGTCCA  3316

Query 1813  --------------------------------------------------------------------------  1812
                                                                                      
Sbjct 3317  GGAGCTCTGTGGGAGGAGGCACCCAGATTACCTTAGGGAGCACAGAGCTCTTAGAATCCTACAAACCACTGAGG  3390

Query 1813  --------------------------------------------------------------------------  1812
                                                                                      
Sbjct 3391  GCCCCAAGGCGCTTTGGTTTATGAGGGTTACATGTATCAGTGTTTATGGCATTTGAGATGAAAACTAAGATAAA  3464

Query 1813  --------------------------------------------------------------------------  1812
                                                                                      
Sbjct 3465  AAAGTATTCATTTATAAGGAATCTATTGCATATTAATGAAACACTTGAAGGAAAAGTAACTATATTTTCCAAAA  3538

Query 1813  --------------------------------------------------------------------------  1812
                                                                                      
Sbjct 3539  CAAAAAAATTCAGTGAGACCCAGCACTTTGGGAGGCCAGAGTGGGGGTATCACTTGAGCCCAGGTGTTTGAGAT  3612

Query 1813  --------------------------------------------------------------------------  1812
                                                                                      
Sbjct 3613  CAGCCTGGGAAACATAGTGAGACCCTCATCTCTCCAAAAACTTCAAAAAATTAGCTGGGCGTGATGGCACACAC  3686

Query 1813  --------------------------------------------------------------------------  1812
                                                                                      
Sbjct 3687  CTGTGGTCCCAGCTACTCAGGTGGCTGAGGAAAGAGTATTGTTTCAGCCGAGTTCAAGGCTGCAGTGAGCCATG  3760

Query 1813  --------------------------------------------------------------------------  1812
                                                                                      
Sbjct 3761  ATTGTACCACTGTACTCCAGCCAGGACAACAGAGTGAGACTCTTGTCTTTAAAATGAAAAAATAAATGTTTAAT  3834

Query 1813  -------  1812
                   
Sbjct 3835  GAGAAAA  3841

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