Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_12102
Subject:
NM_001123383.1
Aligned Length:
5163
Identities:
561
Gaps:
4602

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGCTCTCAGCAACCCCCCTGTATGGGAACGTTCACAGCTGGATGAACAGCGAGAGGGTCCGCATGTGTGGGGC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GAGCGAAGACAGGAAAATCCTTGTAAATGATGGTGACGCTTCAAAAGCCAGACTGGAACTGAGGGAAGAGAATC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CCTTGAACCACAACGTGGTGGATGCGAGCACGGCCCATAGGATCGATGGCCTGGCAGCACTGAGCATGGACCGC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  ACTGGCCTGATCCGGGAAGGGCTGCGGGTCCCGGGAAACATCGTCTATTCTAGCTTGTGTGGACTGGGCTCAGA  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GAAAGGTCGGGAGGCTGCCACAAGCACTCTAGGTGGCCTTGGGTTTTCTTCGGAAAGAAATCCAGAGATGCAGT  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  TCAAACCGAATACACCCGAGACAGTGGAGGCTTCTGCCGTCTCTGGAAAACCCCCAAATGGCTTCAGTGCTATA  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  TACAAAACACCGCCTGGAATACAAAAAAGTGCTGTAGCCACAGCAGAAGCGCTGGGCTTGGACAGGCCTGCCAG  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  CGACAAACAGAGCCCTCTCAACATCAATGGTGCTAGTTATCTGCGGCTGCCCTGGGTCAATCCTTACATGGAGG  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  GTGCCACGCCAGCCATCTACCCTTTCCTCGACTCGCCAAATAAGTATTCACTGAACATGTACAAGGCCTTGCTA  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  CCTCAGCAGTCCTACAGCTTGGCCCAGCCGCTGTATTCTCCAGTCTGCACCAATGGGGAGCGCTTTCTCTACCT  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  GCCGCCACCTCACTACGTCGGTCCCCACATCCCATCGTCCTTGGCATCACCCATGAGGCTCTCGACACCTTCGG  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  CCTCCCCAGCCATCCCGCCTCTCGTCCATTGCGCAGACAAAAGCCTCCCGTGGAAGATGGGCGTCAGCCCTGGG  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  AATCCTGTTGATTCCCACGCCTATCCTCACATCCAGAACAGTAAGCAGCCCAGGGTTCCCTCTGCCAAGGCGGT  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  CACCAGTGGCCTGCCGGGGGACACAGCTCTCCTGTTGCCCCCCTCGCCTCGGCCGTCACCCCGAGTCCACCTTC  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  CCACCCAGCCTGCTGCAGACACCTACTCGGAGTTCCACAAGCACTATGCCAGGATCTCCACCTCTCCTTCAGTT  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  GCCCTGTCAAAGCCATACATGACAGTTAGCAGCGAGTTCCCCGCGGCCAGGCTCTCCAATGGCAAGTATCCCAA  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  GGCTCCGGAAGGGGGCGAAGGTGCCCAGCCAGTGCCCGGGCATGCCCGGAAGACAGCGGTTCAAGACAGAAAAG  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  ATGGCAGCTCACCTCCTCTGTTGGAGAAGCAGACCGTTACCAAAGACGTCACAGATAAGCCACTAGACTTGTCT  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  TCTAAAGTGGTGGATGTAGATGCTTCCAAAGCTGACCACATGAAAAAGATGGCTCCCACGGTCCTGGTTCACAG  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  CAGGGCTGGAAGTGGCTTAGTGCTCTCCGGAAGTGAGATTCCGAAAGAAACACTATCTCCTCCAGGAAATGGTT  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  GTGCTATCTATAGATCTGAAATCATCAGCACTGCTCCCTCATCCTGGGTGGTGCCCGGGCCAAGTCCTAACGAA  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  GAGAACAATGGCAAAAGCATGTCGCTGAAAAACAAGGCATTGGACTGGGCGATACCACAGCAGCGGAGTTCATC  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  ATGCCCGCGCATGGGCGGCACCGATGCTGTCATCACTAACGTTTCAGGGTCAGTGTCGAGTGCAGGCCGCCCAG  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  CCTCCGCATCACCCGCCCCCAATGCCAATGCAGATGGCACCAAAACCAGCAGGAGCTCTGTAGAAACCACACCA  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  TCCGTTATTCAGCACGTGGGCCAGCCCCCGGCCACTCCTGCCAAGCACAGTAGCAGCACCAGCAGCAAGGGCGC  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  CAAAGCCAGCAACCCAGAACCGAGTTTCAAAGCAAACGAGAACGGCCTTCCACCAAGCTCTATATTTCTGTCTC  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  CAAATGAGGCATTCAGGTCCCCACCAATTCCCTACCCCAGGAGTTACCTCCCTTACCCAGCCCCTGAGGGCATT  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  GCTGTAAGTCCCCTCTCCTTACATGGCAAAGGACCTGTCTACCCTCACCCAGTTTTGTTACCCAATGGCAGTCT  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  GTTTCCTGGGCACCTTGCCCCAAAGCCTGGGCTGCCCTATGGGCTTCCCACCGGCCGTCCAGAGTTTGTGACCT  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  ACCAAGATGCCCTGGGGTTGGGCATGGTGCATCCCATGTTGATACCACACACGCCCATAGAGATTACTAAAGAG  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  GAGAAACCAGAGAGGAGATCCCGGTCCCATGAGAGAGCCCGTTACGAGGACCCAACCCTCCGGAATCGGTTTTC  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  CGAGATTTTGGAAACTAGCAGCACCAAGTTACATCCAGATGTCCCCACCGACAAGAACCTAAAGCCGAACCCCA  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  ACTGGAATCAAGGGAAGACTGTTGTCAAAAGCGACAAGCTTGTCTACGTAGACCTTCTCCGAGAAGAACCAGAT  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  GCTAAAACTGACACAAACGTGTCCAAACCCAGCTTTGCAGCAGAGAGTGTTGGCCAGAGCGCTGAGCCCCCCAA  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  GCCCTCAGTTGAGCCGGCCCTGCAGCAGCACCGTGATTTCATCGCCCTGAGAGAGGAGTTGGGGCGCATCAGTG  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  ACTTCCACGAAACTTATACTTTCAAACAGCCAGTCTTCACCGTAAGCAAGGACAGTGTTCTGGCAGGTACCAAC  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  AAAGAGAACCTAGGGTTGCCAGTCTCGACTCCATTCCTGGAGCCACCTCTGGGGAGCGATGGCCCTGCTGTAAC  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  TTTTGGTAAAACCCAAGAGGATCCCAAACCATTTTGTGTGGGCAGTGCCCCACCAAGTGTGGATGTGACCCCCA  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  CCTATACCAAAGATGGAGCTGATGAGGCTGAATCAAATGATGGCAAAGTTCTGAAACCGAAGCCATCTAAGCTG  2886

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2887  GCAAAGAGAATCGCCAACTCAGCGGGTTACGTGGGTGACCGATTCAAATGTGTCACTACCGAACTGTATGCAGA  2960

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2961  TTCCAGTCAGCTCAGCCGGGAGCAACGGGCATTGCAGATGGAAGGATTACAAGAGGACAGTATTTTATGTCTAC  3034

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3035  CCGCTGCTTACTGTGAGCGTGCAATGATGCGCTTCTCAGAGTTGGAGATGAAAGAAAGAGAAGGTGGCCACCCA  3108

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3109  GCAACCAAAGACTCCGAGATGTGCAAATTCAGCCCAGCCGACTGGGAAAGGTTGAAAGGAAATCAGGACAAAAA  3182

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3183  GCCAAAGTCGGTCACCCTGGAGGAGGCCATTGCAGAACAGAACGAAAGTGAGAGATGCGAGTATAGTGTTGGAA  3256

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3257  ACAAGCACCGTGATCCCTTTGAAGCCCCAGAGGACAAAGATCTTCCTGTGGAGAAGTACTTTGTGGAGAGGCAG  3330

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3331  CCTGTGAGCGAGCCTCCCGCAGACCAGGTGGCCTCGGACATGCCTCACAGCCCCACCCTCCGGGTGGACAGGAA  3404

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3405  ACGCAAAGTCTCAGGTGACAGCAGCCACACTGAGACCACTGCGGAGGAGGTGCCAGAGGACCCTCTGCTGAAAG  3478

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3479  CCAAACGCCGACGAGTCTCTAAAGGGCTCCATCCTAAAAAACAACGCCACTTGCTGCACCTTAGAGAACGATGG  3552

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3553  GAGCAGCAGGTGTCGGCAGCAGATGGCAAACCTGGCCGGCAAAGCAGGAAGGAAGTGACCCAGGCCACTCAGCC  3626

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3627  TGAGGCCATTCCTCAGGGGACTAACATCACTGAAGAGAAACCTGGCAGGAAAAGGGCAGAGGCCAAAGGCAACA  3700

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3701  GAAGCTGGTCGGAAGAGTCTCTTAAACCCAGTGACAATGAACAAGGCTTGCCTGTGTTCTCCGGCTCTCCGCCC  3774

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3775  ATGAAGAGTCTTTCATCCACCAGTGCAGGCGGCAAAAAGCAGGCTCAGCCAAGCTGCGCACCAGCCTCCAGGCC  3848

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3849  GCCTGCCAAACAGCAGAAAATTAAAGAAAACCAGAAGACAGATGTGCTGTGTGCAGACGAAGAAGAGGATTGCC  3922

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3923  AGGCTGCCTCCCTGCTGCAGAAATACACCGACAACAGCGAGAAGCCATCCGGGAAGAGACTGTGCAAAACCAAA  3996

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3997  CACTTGATCCCTCAGGAGTCCAGGCGGGGATTGCCACTGACAGGGGAATACTACGTGGAGAATGCCGATGGCAA  4070

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4071  GGTGACTGTCCGGAGATTCAGAAAGCGGCCGGAGCCCAGTTCGGACTATGATCTGTCACCAGCCAAGCAGGAGC  4144

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4145  CAAAGCCCTTCGACCGCTTGCAGCAACTGCTACCAGCCTCCCAGTCCACACAGCTGCCATGCTCAAGTTCCCCT  4218

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4219  CAGGAGACCACCCAGTCTCGCCCTATGCCGCCGGAAGCACGGAGACTTATTGTCAATAAGAACGCTGGCGAGAC  4292

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4293  CCTTCTGCAGCGGGCAGCCAGGCTTGGCTATGAGGAAGTGGTCCTGTACTGCTTAGAGAACAAGATTTGTGATG  4366

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4367  TAAATCATCGGGACAACGCAGGTTACTGCGCCCTGCATGAAGCTTGTGCTAGGGGCTGGCTCAACATTGTGCGA  4440

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4441  CACCTCCTTGAATATGGCGCTGATGTCAACTGTAGTGCCCAGGATGGAACCAGGCCTCTGCACGATGCTGTTGA  4514

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4515  GAACGATCACTTGGAAATTGTCCGACTACTTCTCTCTTATGGTGCTGACCCCACCTTGGCTACGTACTCAGGTA  4588

Query    1  --------------ATGACCCACAGTGAACTTATGGAAAAGTTCTTAACAGATTATTTAAATGACCTCCAGGGT  60
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4589  GAACCATCATGAAAATGACCCACAGTGAACTTATGGAAAAGTTCTTAACAGATTATTTAAATGACCTCCAGGGT  4662

Query   61  CGCAATGATGATGACGCCAGTGGCACTTGGGACTTCTATGGCAGCTCTGTTTGTGAACCAGATGATGAAAGTGG  134
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4663  CGCAATGATGATGACGCCAGTGGCACTTGGGACTTCTATGGCAGCTCTGTTTGTGAACCAGATGATGAAAGTGG  4736

Query  135  CTATGATGTTTTAGCCAACCCCCCAGGACCAGAAGACCAGGATGATGATGACGATGCCTATAGCGATGTGTTTG  208
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4737  CTATGATGTTTTAGCCAACCCCCCAGGACCAGAAGACCAGGATGATGATGACGATGCCTATAGCGATGTGTTTG  4810

Query  209  AATTTGAATTTTCAGAGACCCCCCTCTTACCGTGTTATAACATCCAAGTATCTGTGGCTCAGGGGCCACGAAAC  282
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4811  AATTTGAATTTTCAGAGACCCCCCTCTTACCGTGTTATAACATCCAAGTATCTGTGGCTCAGGGGCCACGAAAC  4884

Query  283  TGGCTACTGCTTTCGGATGTCCTTAAGAAATTGAAAATGTCCTCCCGCATATTTCGCTGCAATTTTCCAAACGT  356
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4885  TGGCTACTGCTTTCGGATGTCCTTAAGAAATTGAAAATGTCCTCCCGCATATTTCGCTGCAATTTTCCAAACGT  4958

Query  357  GGAAATTGTCACCATTGCAGAGGCAGAATTTTATCGGCAGGTTTCTGCAAGTCTCTTGTTCTCTTGCTCCAAAG  430
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4959  GGAAATTGTCACCATTGCAGAGGCAGAATTTTATCGGCAGGTTTCTGCAAGTCTCTTGTTCTCTTGCTCCAAAG  5032

Query  431  ACCTGGAAGCCTTCAACCCTGAAAGTAAGGAGCTGTTAGATCTGGTGGAATTCACGAACGAAATTCAGACTCTG  504
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5033  ACCTGGAAGCCTTCAACCCTGAAAGTAAGGAGCTGTTAGATCTGGTGGAATTCACGAACGAAATTCAGACTCTG  5106

Query  505  CTGGGCTCCTCTGTAGAGTGGCTCCACCCCAGTGATCTGGCCTCAGACAACTACTGG  561
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5107  CTGGGCTCCTCTGTAGAGTGGCTCCACCCCAGTGATCTGGCCTCAGACAACTACTGG  5163

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.