Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_12167
Subject:
XR_385394.3
Aligned Length:
3604
Identities:
1212
Gaps:
2214

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AAAGTAAGGCGGGACTTCCGGCGTTTGAAAAACTTCCGGCGGGAACCGGAAGATTCCTCAGCAGAACTCTCTTC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TCCAGATTCGCCAAGCCCGAAGATGCCCTCATTGCGCAAAAGAGTGAAAATACAGGCCGAGAATGCAGAACCCA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  AAGATGAATGCTCTTTCTTCTCTGAGTTGTCATCTGGCTCTGAAGAAGATAACAAGGAAGACAGCATTTGGGAA  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  CCTCAGAAGAAAGTTCCCAGAAATCGTAGACAGCCTGCTTCCAAGGGATCCAAACGGAAGCAGGGGCCCAGGGC  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GAAGAAGAGCTCCCAACAGGTGGATGACGAATCAAAAGATGTGGCTGTTAAGGAGGAGTTGAACAGCCCGGTGG  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CTATTGTTGATGCAGATTTGGAAGAGAAAAGCCACAAGTTGCAGACGACAAAGACTCTTAAAACTGCAGCAAAA  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  AAGCAAAAAAAACCAGTTCCGAGGGCCAAAAAAAGGTTGAAAGTTGATGAGGAAACCAGCCAGGCCAGCCCCTT  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  GGAGGGTGGAGGCAGTAATGTGGAGACCCCCTCAACAAGCGCCTGTGGAAATGTGTGCAAGAAGGAGGAGAGCG  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  AGGACAGCTTCACGTTTGGGCAGTCCCCGGTAAAGAGGATCAGGACTGAGTCATGTCCTCAGGGGAGGCCGGCC  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  AGGGTTCCCGACGGTGTCAGCGACATTAAAGAGGAGGTAGAAATGAACTGGGACGTAGTACAGGTTTTATCTGA  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  GAGAACTAATATTGAACCTTGGGTTTGTGCCAACATCATACGCCTCTTTAATGATGACAACACAATCCCCTTCA  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  TTGTACGCTATCGAAAAGAGCTCATTAATAACCTTGATGCTGATTTCTTAAGAGAAGTTCGTCAAACCCTAGAT  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  GAGCTACGGGATGTTGCCAAGAAGGTTCATAGTAGAATCCAGAAAATTAAGAAGGAGGGGAAAATGTCGGAGTG  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  CTTGCTGCAAGCCTTGTTGAACTGTAAAACGTTCGAGGAACTAGAGCATGTGTCTGCTCCATATAAAATGGGGA  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  GCAAGGGCACGAAAGCCCAGAGAGCAAAACAGTTGGGGCTAGAAGGAGCAGCGTGGACCCTGCTGGAGAACCCG  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  GGGCAGCTCAACCTGCTGTCTTACATCAAGCCTGATGTTAAAGGCCTTTCTGAGCTCAACGATATCGAAACAGG  1184

Query    1  ----------------------ATGATTGCTAAAGACAAAGACACGCTTGACTTCATTCGGAACTTGTGCCAGA  52
                                  ||||||||||||||||||||.|||||||||||.||||||..||||||..|..
Sbjct 1185  AGTACAACATATTTTAGCAGACATGATTGCTAAAGACAAAGATACGCTTGACTTTATTCGGGGCTTGTGTAAAC  1258

Query   53  AGAGACATGTTTGTATCCAGTCATCTCTGGCAAAAGTATCCTCAAAAAAGGTAAATGAGAAAGATGTTGATAAG  126
            |.|||.|..|||||||||||||||||||.||||||||||||||||||||.|||||||||||.||.|||||||||
Sbjct 1259  ATAGATACATTTGTATCCAGTCATCTCTTGCAAAAGTATCCTCAAAAAAAGTAAATGAGAAGGAAGTTGATAAG  1332

Query  127  TTTCTGCTCTACCAGCATTTTTCCTGCAACATAAGAAACATTCACCATCATCAGATTCTGGCAATTAACCGTGG  200
            ||||.|||.||||||.||||.||||||||||||||.|.|||.||||||||.|||||||||||.||||||||.||
Sbjct 1333  TTTCAGCTTTACCAGAATTTCTCCTGCAACATAAGGACCATCCACCATCACCAGATTCTGGCCATTAACCGAGG  1406

Query  201  AGAAAATTTGAAGGTACTGACGGTTAAGGTCAATATTTCTGATGGAGTGAAGGATGAATTCTGTAGGTGGTGCA  274
            |||.|||||||||.|.|||||.||.||.|||||.||||||||||||||.|||.|.|||||||||.|.|||||.|
Sbjct 1407  AGAGAATTTGAAGATCCTGACCGTCAAAGTCAACATTTCTGATGGAGTAAAGAACGAATTCTGTCGATGGTGTA  1480

Query  275  TCCAAAACAGGTGGAGACCACGTAGCTTTGCAAGGCCAGAGTTAATGAAGATCTTATATAATTCACTGAATGAT  348
            |.||.|||||||||||.||||||.||||||||.||||||||||.||||||||||||.|||||||||||.||||.
Sbjct 1481  TACAGAACAGGTGGAGGCCACGTGGCTTTGCACGGCCAGAGTTGATGAAGATCTTACATAATTCACTGGATGAC  1554

Query  349  TCCTTTAAACGCCTTATTTATCCTCTTCTCTGTAGAGAATTCAGAGCCAAACTAACATCAGATGCAGAGAAGGA  422
            ||||||||.|||||.|||..||||||.|||||||||||.||||||||||||||.||||||||||||||||||.|
Sbjct 1555  TCCTTTAAGCGCCTCATTGTTCCTCTCCTCTGTAGAGAGTTCAGAGCCAAACTGACATCAGATGCAGAGAAGCA  1628

Query  423  ATCAGTAATGATGTTTGGACGGAACCTTCGTCAGCTCCTTTTAACAAGCCCTGTTCCAGGGCGCACCTTAATGG  496
            ||||||||||||||||||||.||||||.||.|||||||||||||||||.|||||.|||||.||||||.|.||||
Sbjct 1629  ATCAGTAATGATGTTTGGACAGAACCTCCGCCAGCTCCTTTTAACAAGTCCTGTGCCAGGCCGCACCCTGATGG  1702

Query  497  GAGTGGATCCTGGTTATAAACATGGTTGCAAATTAGCTATAATTTCTCCTACTAGTCAGATACTTCATACTGAT  570
            ||||.||||||||.||.||||||||.||||||.||||.||.||||||||||||||||||||.|||||.||.|||
Sbjct 1703  GAGTAGATCCTGGCTACAAACATGGATGCAAACTAGCCATCATTTCTCCTACTAGTCAGATCCTTCACACGGAT  1776

Query  571  GTGGTTTACTTGCATTGTGGACAAGGCTTCCGAGAGGCGGAGAAAATAAAGACACTTTTGCTGAATTTCAACTG  644
            ||||||||||||||.|||||||||||||||||||||||.|||||.||.||||..|||||||||.||||||||||
Sbjct 1777  GTGGTTTACTTGCACTGTGGACAAGGCTTCCGAGAGGCCGAGAAGATCAAGAGGCTTTTGCTGCATTTCAACTG  1850

Query  645  CAGCACAGTAGTGATTGGAAATGGAACTGCCTGCAGGGAAACAGAAGCTTACTTTGCTGACCTGATAATGAAGA  718
            |||.|||||.|||||.||||||||||||||||||.|||||||.|||||.|||||||||||||||||||||||.|
Sbjct 1851  CAGAACAGTGGTGATCGGAAATGGAACTGCCTGCCGGGAAACTGAAGCCTACTTTGCTGACCTGATAATGAAAA  1924

Query  719  ATTATTTTGCACCACTGGATGTTGTTTACTGTATCGTCAGTGAAGCAGGAGCATCAATCTACAGTGTCAGCCCT  792
            ||||.|||||||||||||||||.||||||||.|||||||||||||||||.||.||.|||||||||||||||||.
Sbjct 1925  ATTACTTTGCACCACTGGATGTCGTTTACTGCATCGTCAGTGAAGCAGGGGCCTCCATCTACAGTGTCAGCCCC  1998

Query  793  GAAGCTAACAAAGAGATGCCAGGGCTGGACCCTAATTTGAGAAGTGCAGTTTCCATAGCAAGGCGTGTACAAGA  866
            |||||.|||||.|||||||||||.|||||||||||.||||||||||||||||||||||||||||||||.|||||
Sbjct 1999  GAAGCGAACAAGGAGATGCCAGGACTGGACCCTAACTTGAGAAGTGCAGTTTCCATAGCAAGGCGTGTTCAAGA  2072

Query  867  TCCATTAGCTGAGCTAGTGAAAATTGAGCCAAAGCACATTGGAGTTGGAATGTATCAGCATGACGTATCCCAGA  940
            ||||||||||||||||||||||.||||.||.|||||||||||||||||||||||||                  
Sbjct 2073  TCCATTAGCTGAGCTAGTGAAATTTGACCCGAAGCACATTGGAGTTGGAATGTATC------------------  2128

Query  941  CTTTACTCAAGGCAACACTGGACAGTGTTGTAGAAGAATGTGTCAGCTTTGTGGGAGTGGATATTAACATCTGT  1014
                                                                                      
Sbjct 2129  --------------------------------------------------------------------------  2128

Query 1015  TCAGAAGTTTTGTTAAGGCATATTGCAGGACTCAATGCCAACAGGGCCAAAAATATTATTGAATGGCGAGAGAA  1088
                                                                                      
Sbjct 2129  --------------------------------------------------------------------------  2128

Query 1089  AAATGGACCCTTTATCAACCGAGAACAGCTGAAGAAAGTGAAAGGGCTGGGCCCAAAATCCTTCCAACAGTGTG  1162
                                                                                      
Sbjct 2129  --------------------------------------------------------------------------  2128

Query 1163  CTGGCTTCATCAGAATCAACCAGGATTATATCCGAACGTTTTGCAGTCAGCAAACTGAAACTTCAGGCCAAATT  1236
                                                                                      
Sbjct 2129  --------------------------------------------------------------------------  2128

Query 1237  CAAGGAGTTGCTGTGACATCTTCAGCAGACGTTGAGGTCACAAATGAGAAGCAGGGCAAAAAGAAGAGCAAAAC  1310
                                                                                      
Sbjct 2129  --------------------------------------------------------------------------  2128

Query 1311  TGCAGTGAATGTTTTACTGAAGCCAAATCCTTTGGACCAAACTTGTATTCATCCAGAATCATATGACATAGCAA  1384
                                                                                      
Sbjct 2129  --------------------------------------------------------------------------  2128

Query 1385  TGAGGTTTTTGTCATCCATTGGAGGGACACTGTATGAGGTTGGAAAGCCTGAAATGCAACAAAAAATAAATTCA  1458
              ||||||||.||.|.||||||.||||||.|||.||||.|||||||||||||||||||.||.||||||||  |.
Sbjct 2129  --AGGTTTTTATCGTTCATTGGGGGGACAATGTGTGAGATTGGAAAGCCTGAAATGCAGCAGAAAATAAA--CG  2198

Query 1459  T-TC-CTTGAAAAGGAAGGAATGGAGAAAATTGCAGAAAGATTGCAAACAACAGTACACACCTTACAGGTCATC  1530
            | || ||.|..||.|||||.||.|||.|||.|||.|||||.||.||.|||||.||.|||||..|.|||||||||
Sbjct 2199  TGTCTCTCGGGAAAGAAGGCATAGAGGAAACTGCTGAAAGGTTACAGACAACTGTGCACACACTGCAGGTCATC  2272

Query 1531  ATAGATGGTCTCAGCCAGCCTGAAAGCTTTGACTTTCGAACAGATTTTGATAAACCTGATTTCAAGAGAAGCAT  1604
            ||||||||.||.||||||||..|||.|||||||.|.|||||||||||||||||.|||||.||||||||||||||
Sbjct 2273  ATAGATGGACTGAGCCAGCCCAAAACCTTTGACATCCGAACAGATTTTGATAAGCCTGACTTCAAGAGAAGCAT  2346

Query 1605  AGTATGCCTGGAAGATCTGCAGATTGGGACAGTTCTTACAGGCAAAGTTGAGAATGCCACTCTCTTTGGAATTT  1678
            |||.||.||||||||.||||||.|||||||||||||||||||||||||.||||||||.|||||.|||||..|.|
Sbjct 2347  AGTGTGTCTGGAAGACCTGCAGGTTGGGACAGTTCTTACAGGCAAAGTGGAGAATGCTACTCTGTTTGGGGTCT  2420

Query 1679  TTGTGGATATAGGAGTGGGGAAATCTGGGCTGATTCCCATACGAAATG----TAACAGAAGCAAAACTTTCAAA  1748
            ||||||||||||||||||||||..|.|||||||||||.||.||    |    ||||||||||.||.||.||.||
Sbjct 2421  TTGTGGATATAGGAGTGGGGAAGGCGGGGCTGATTCCTATCCG----GTTCATAACAGAAGCCAAGCTGTCCAA  2490

Query 1749  AACAAAGAAGAGAAGAAGCCTTGGACTGGGCCCCGGAGAAAGAGTGGAAGTCCAAGTACTCAACATTGACATCC  1822
            ||||||||.||||||||||||.||.||||||||||||||.|.||||||.||..||||.|||||..|.|||||.|
Sbjct 2491  AACAAAGAGGAGAAGAAGCCTGGGCCTGGGCCCCGGAGAGAAAGTGGAGGTGAAAGTCCTCAATGTCGACATTC  2564

Query 1823  CCCGATCTAGGATTACTCTGGACCTCATTCGGGTGTTA------------------------------------  1860
            ||||||||.|||||.|.||.||||||.|.||||||||.                                    
Sbjct 2565  CCCGATCTCGGATTTCGCTCGACCTCCTCCGGGTGTTGTGAGTGCCCCACCGAAGGCCAAACACCAATGTGTTC  2638

Query 1861  --------------------------------------------------------------------------  1860
                                                                                      
Sbjct 2639  CCTCACTTCTACAGCCTGACAAGGACGAGCCAGAGCTCATGGAACCTAGAGAGCGGGGGGGGGGGGGCTCCTGG  2712

Query 1861  --------------------------------------------------------------------------  1860
                                                                                      
Sbjct 2713  GTAGAAGTGTTCATCACACTATCCTGACTCCCACGGAAAGCAACAGGAGACCTCGCATGGTGTCCTACAGCAGC  2786

Query 1861  --------------------------------------------------------------------------  1860
                                                                                      
Sbjct 2787  AGTTTCTGTCTTTGTAATTCCTTGTTGACCACATACAGCAGGCAGCTTCACGTCCTCCCGCTAACATCTGCTGC  2860

Query 1861  --------------------------------------------------------------------------  1860
                                                                                      
Sbjct 2861  CTTAGACCTGGGTGGGATGTCTTGCTTATTTGAAATGTGTAGTGTTGATTGACACATTAAGACTAGCAGTCTTT  2934

Query 1861  --------------------------------------------------------------------------  1860
                                                                                      
Sbjct 2935  AATCCTGCCACTTTATTGAGGTGTTATTAGCACTTTTGTTCATAATTCATAATTTTGTAATAATCTTTATTTTC  3008

Query 1861  --------------------------------------------------------------------------  1860
                                                                                      
Sbjct 3009  CCTTAGCAAACCAAGTAAAAATAAACTAGTAAAAGATTATCATGTTTTATGACCATCAACGGAATCATTTTAAT  3082

Query 1861  ----------------------------------------------------  1860
                                                                
Sbjct 3083  GTGTTCCTCAGAACGTATGTATTGACTTCTACAATAAATGACTGGCTGGTGA  3134

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