Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_12304
- Subject:
- XR_002956990.1
- Aligned Length:
- 5002
- Identities:
- 2102
- Gaps:
- 2898
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GCTAATGAGAGCTCTAACACTCCTGGACTTGACTGAAAATTTTTCTCAGTAGGTTTCAGAAAGTGCTGAGAGGT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GTAAGCCCAGCAACGTGCAAGGGGAAAGGGGACAGGATTCTGGATGGCCATTTGCTTCACTGGGATGCAAAACC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TCTTTTGAGTACTAGAATCAGTATTTCTTCTTCCATCTCTGCTGTACCTGAGAAGAAATGGCCAAACGCACCTT 222
Query 1 ----------------------------------------ATGAGTGCCATCACAGTGGCCCTTCTCAGCCTCT 34
||||||||||||||||||||||||||||||||||
Sbjct 223 CTCTAACTTGGAGACATTCCTGATTTTCCTCCTTGTAATGATGAGTGCCATCACAGTGGCCCTTCTCAGCCTCT 296
Query 35 TGTTTATCACCAGTGGGACCATTGAAAACCACAAAGATTTAGGAGGCCATTTTTTTTCAACCACCCAAAGCCCT 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TGTTTATCACCAGTGGGACCATTGAAAACCACAAAGATTTAGGAGGCCATTTTTTTTCAACCACCCAAAGCCCT 370
Query 109 CCAGCCACCCAGGGCTCCACAGCCGCCCAACGCTCCACAGCCACCCAGCATTCCACAGCCACCCAGAGCTCCAC 182
|||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 CCAGCCACCCAGGGCTCCACAGCTGCCCAACGCTCCACAGCCACCCAGCATTCCACAGCCACCCAGAGCTCCAC 444
Query 183 AGCCACTCAAACTTCTCCAGTGCCTTTAACCCCAGAGTCTCCTCTATTTCAGAACTTCAGTGGCTACCATATTG 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 AGCCACTCAAACTTCTCCAGTGCCTTTAACCCCAGAGTCTCCTCTATTTCAGAACTTCAGTGGCTACCATATTG 518
Query 257 GTGTTGGACGAGCTGACTGCACAGGACAAGTAGCAGATATCAATTTGATGGGCTATGGCAAATCCGGCCAGAAT 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 GTGTTGGACGAGCTGACTGCACAGGACAAGTAGCAGATATCAATTTGATGGGCTATGGCAAATCCGGCCAGAAT 592
Query 331 GCACAGGGCATCCTCACCAGGCTATACAGTCGTGCCTTCATCATGGCAGAACCTGATGGGTCCAATCGAACAGT 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 GCACAGGGCATCCTCACCAGGCTATACAGTCGTGCCTTCATCATGGCAGAACCTGATGGGTCCAATCGAACAGT 666
Query 405 GTTTGTCAGCATCGACATAGGCATGGTATCCCAAAGGCTCAGGCTGGAGGTCCTGAACAGACTGCAGAGTAAAT 478
||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 GTTTGTCAGCATCGACATAGGCATGGTATCACAAAGGCTCAGGCTGGAGGTCCTGAACAGACTGCAGAGTAAAT 740
Query 479 ATGGCTCCCTGTACAGAAGAGATAATGTCATCCTGAGTGGCACTCACACTCATTCAGGTCCTGCAGGATATTTC 552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 ATGGCTCCCTGTACAGAAGAGATAATGTCATCCTGAGTGGCACTCACACTCATTCAGGTCCTGCAGGATATTTC 814
Query 553 CAGTATACCGTGTTTGTAATTGCCAGTGAAGGATTTAGCAATCAAACTTTTCAGCACATGGTCACTGGTATCTT 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 CAGTATACCGTGTTTGTAATTGCCAGTGAAGGATTTAGCAATCAAACTTTTCAGCACATGGTCACTGGTATCTT 888
Query 627 GAAGAGCATTGACATAGCACACACAAATATGAAACCAGGCAAAATCTTCATCAATAAAGGAAATGTGGATGGTG 700
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 GAAGAGCATTGACATAGCACACACAAATATGAAACCAGGCAAAATCTTCATCAATAAAGGAAATGTGGATGGTG 962
Query 701 TGCAGATCAACAGAAGTCCGTATTCTTACCTTCAAAATCCGCAGTCAGAGAGAGCAAGGTATTCTTCAAATACA 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 TGCAGATCAACAGAAGTCCGTATTCTTACCTTCAAAATCCGCAGTCAGAGAGAGCAAGGTATTCTTCAAATACA 1036
Query 775 GACAAGGAAATGATAGTTTTGAAAATGGTAGATTTGAATGGAGATGACTTGGGCCTTATCAGCTGGTTTGCCAT 848
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 GACAAGGAAATGATAGTTTTGAAAATGGTAGATTTGAATGGAGATGACTTGGGCCTTATCAGCTGGTTTGCCAT 1110
Query 849 CCACCCGGTCAGCATGAACAACAGTAACCATCTTGTAAACAGTGACAATGTGGGCTATGCATCTTACCTGCTTG 922
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 CCACCCGGTCAGCATGAACAACAGTAACCATCTTGTAAACAGTGACAATGTGGGCTATGCATCTTACCTGCTTG 1184
Query 923 AGCAAGAGAAGAACAAAGGATATCTACCTGGACAGGGGCCATTTGTAGCAGCCTTTGCTTCATCAAACCTAGGA 996
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 AGCAAGAGAAGAACAAAGGATATCTACCTGGACAGGGGCCATTTGTAGCAGCCTTTGCTTCATCAAACCTAGGA 1258
Query 997 GATGTGTCCCCCAACATTCTTGGACCACGTTGCATCAACACAGGAGAGTCCTGTGATAACGCCAATAGCACTTG 1070
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 GATGTGTCCCCCAACATTCTTGGACCACGTTGCATCAACACAGGAGAGTCCTGTGATAACGCCAATAGCACTTG 1332
Query 1071 TCCCATTGGTGGGCCTAGCATGTGCATTGCTAAGGGACCTGGACAGGATATGTTTGACAGCACACAAATTATAG 1144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 TCCCATTGGTGGGCCTAGCATGTGCATTGCTAAGGGACCTGGACAGGATATGTTTGACAGCACACAAATTATAG 1406
Query 1145 GACGGGCCATGTATCAGAGAGCAAAG------------------------------------------------ 1170
||||||||||||||||||||||||||
Sbjct 1407 GACGGGCCATGTATCAGAGAGCAAAGGAACTCTATGCCTCTGCCTCCCAGGAGGTAACAGGACCACTGGCTTCA 1480
Query 1171 ---------------------------------------------------------TCAAAAACATGTAAACC 1187
|||||||||||||||||
Sbjct 1481 GCACACCAGTGGGTGGATATGACAGATGTGACTGTCTGGCTCAATTCCACACATGCATCAAAAACATGTAAACC 1554
Query 1188 AGCATTGGGCTACAGTTTTGCAGCTGGCACTATTGATGGAGTTGGAGGCCTCAATTTTACACAGGGGAAAACAG 1261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 AGCATTGGGCTACAGTTTTGCAGCTGGCACTATTGATGGAGTTGGAGGCCTCAATTTTACACAGGGGAAAACAG 1628
Query 1262 AAGGGGATCCATTTTGGGACACCATTCGGGACCAGATCCTGGGAAAGCCATCTGAAGAAATTAAAGAATGTCAT 1335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 AAGGGGATCCATTTTGGGACACCATTCGGGACCAGATCCTGGGAAAGCCATCTGAAGAAATTAAAGAATGTCAT 1702
Query 1336 AAACCAAAGCCCATCCTTCTTCACACCGGAGAACTATCAAAACCTCACCCCTGGCATCCAGACATTGTTGATGT 1409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 AAACCAAAGCCCATCCTTCTTCACACCGGAGAACTATCAAAACCTCACCCCTGGCATCCAGACATTGTTGATGT 1776
Query 1410 TCAGATTATTACCCTTGGGTCCTTGGCCATAACTGCCATCCCCGGGGAGTTTACGACCATGTCTGGACGAAGAC 1483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 TCAGATTATTACCCTTGGGTCCTTGGCCATAACTGCCATCCCCGGGGAGTTTACGACCATGTCTGGACGAAGAC 1850
Query 1484 TTCGAGAGGCAGTTCAAGCAGAATTTGCATCTCATGGGATGCAGAACATGACTGTTGTTATTTCAGGTCTATGC 1557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851 TTCGAGAGGCAGTTCAAGCAGAATTTGCATCTCATGGGATGCAGAACATGACTGTTGTTATTTCAGGTCTATGC 1924
Query 1558 AACGTCTATACACATTACATTACCACTTATGAAGAATACCAGGCTCAGCGATATGAGGCAGCATCGACAATTTA 1631
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925 AACGTCTATACACATTACATTACCACTTATGAAGAATACCAGGCTCAGCGATATGAGGCAGCATCGACAATTTA 1998
Query 1632 TGGACCGCACACATTATCTGCTTACATTCAGCTCTTCAGAAACCTTGCTAAGGCTATTGCTACGGACACGGTAG 1705
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999 TGGACCGCACACATTATCTGCTTACATTCAGCTCTTCAGAAACCTTGCTAAGGCTATTGCTAC----------- 2061
Query 1706 CCAACCTGAGCAGAGGTCCAGAACCTCCCTTTTTCAAACAATTAATAGTTCCATTAATTCCTAGTATTGTGGAT 1779
|||||||||||
Sbjct 2062 ---------------------------------------------------------------GTATTGTGGAT 2072
Query 1780 AGAGCACCAAAAGGCAGAACTTTCGGGGATGTCCTGCAGCCAGCAAAACCTGAATACAGAGTGGGGGAAGTTGC 1853
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073 AGAGCACCAAAAGGCAGAACTTTCGGGGATGTCCTGCAGCCAGCAAAACCTGAATACAGAGTGGGGGAAGTTGC 2146
Query 1854 TGAAGTTATATTTGTAGGTGCTAACCCGAAGAATTCAGTACAAAACCAGACCCATCAGACCTTCCTCACTGTGG 1927
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2147 TGAAGTTATATTTGTAGGTGCTAACCCGAAGAATTCAGTACAAAACCAGACCCATCAGACCTTCCTCACTGTGG 2220
Query 1928 AGAAATATGAGGCTACTTCAACATCGTGGCAGATAGTGTGTAATGATGCCTCCTGGGAGACTCGTTTTTATTGG 2001
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2221 AGAAATATGAGGCTACTTCAACATCGTGGCAGATAGTGTGTAATGATGCCTCCTGGGAGACTCGTTTTTATTGG 2294
Query 2002 CACAAGGGACTCCTGGGTCTGAGTAATGCAACAGTGGAATGGCATATTCCAGACACTGCCCAGCCTGGAATCTA 2075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2295 CACAAGGGACTCCTGGGTCTGAGTAATGCAACAGTGGAATGGCATATTCCAGACACTGCCCAGCCTGGAATCTA 2368
Query 2076 CAGAATAAGATATTTTGGACACAATCGGAAGCAGGACATTCTGAAGCCTGCTGTCATACTTTCATTTGAAGGCA 2149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2369 CAGAATAAGATATTTTGGACACAATCGGAAGCAGGACATTCTGAAGCCTGCTGTCATACTTTCATTTGAAGGCA 2442
Query 2150 CTTCCCCGGCTTTTGAAGTTGTAACTATT--------------------------------------------- 2178
|||||||||||||||||||||||||||||
Sbjct 2443 CTTCCCCGGCTTTTGAAGTTGTAACTATTTAGTGAAAAGTTGATAGATCATTTAAAGAACAGCTTTACTCTCTA 2516
Query 2179 -------------------------------------------------------------------------- 2178
Sbjct 2517 CACATTATATAAGTGATTTCAAATGAATGTGAACTAGTGAACTACCATGTTGACTTCTATAATCGTCCCTGTTT 2590
Query 2179 -------------------------------------------------------------------------- 2178
Sbjct 2591 GGGGACAGATAGTTTACTGCTAATGGGGTGGAGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG 2664
Query 2179 -------------------------------------------------------------------------- 2178
Sbjct 2665 TGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGTTTGTCCCATATATCTTGCTCCAGCAGCCATAT 2738
Query 2179 -------------------------------------------------------------------------- 2178
Sbjct 2739 ATCTTGTGGTCTACAGCCTAAAGCATGATTTCCCTTGAAGTCTTGGGGTTGTTTAAAGGAGAGTCCCTTCAATA 2812
Query 2179 -------------------------------------------------------------------------- 2178
Sbjct 2813 TAAAACCTCTGAAATATTAGTGAGAATGGCTCACTAATGTGAACAATGTTTAAATTATTTATTTATATATAGAA 2886
Query 2179 -------------------------------------------------------------------------- 2178
Sbjct 2887 TTACTGAATATTAGTACTGGGAAAATTTATAGAAATCATCTAGTCTTACCCTTCATCTTACATATAAGAAAAAT 2960
Query 2179 -------------------------------------------------------------------------- 2178
Sbjct 2961 GGTCTTTTCTTCTAATCACATTTACAAAATATGATATAAACCTTGACCATGAATGTATGAGCCTAATTAGAGAA 3034
Query 2179 -------------------------------------------------------------------------- 2178
Sbjct 3035 ACAGAAAATCAGCATGTCAGTTTTCCTTCATTCAAAATAACATAGTCTTTCTAAGCAGTCATTCTGGAGTTAAC 3108
Query 2179 -------------------------------------------------------------------------- 2178
Sbjct 3109 ATGCCTAGTTCAGAGCCGCTGTGGATGCTCAAATCATTTCTGGAATTGCCTTCAGGACACAATTATGAGAAAGT 3182
Query 2179 -------------------------------------------------------------------------- 2178
Sbjct 3183 CAGACTTCCAATATTTTGATCATGCCTTGTGTTTTCCTAAGTGTCCTTATCCCACTGGATTGTGTCTCTTACTC 3256
Query 2179 -------------------------------------------------------------------------- 2178
Sbjct 3257 CCAAGACTTATTCCAAATGATTTTTTGACTCTTTTCATTAATCAAATTCACCCCAAACCAGAAAGTTTTGCCAT 3330
Query 2179 -------------------------------------------------------------------------- 2178
Sbjct 3331 TAGTGTAGATATTAAAAATATTACTGGCTGGGAAAGCACTCCTCAAAGCAGAGGTTCTAAATTAATTTATCTGT 3404
Query 2179 -------------------------------------------------------------------------- 2178
Sbjct 3405 TCTTTTACCATTTGCTCACTCACTCACTCATGGACCCATTCAATCATAGAATATTTAAGATTTATATGCCCAGA 3478
Query 2179 -------------------------------------------------------------------------- 2178
Sbjct 3479 ATTATAATAGTGCCTAGGCCTTGATAATTAGTGAATTTGTACTTGGGGTGAATGTGTAAGTGTCAAAAGGTAAC 3552
Query 2179 -------------------------------------------------------------------------- 2178
Sbjct 3553 TATTATGAAGGAGAAAATAATCGATTTAATATGTAAATTCTGGGGAAGCATTTAAAAAATCAGTAATCTTCAAG 3626
Query 2179 -------------------------------------------------------------------------- 2178
Sbjct 3627 TTATATCTTGTGTATCATCTGTGTTGGATACTCTAATTTGGGGGGAAAGAGGCTCCAGACAGTTTGCTAAATAC 3700
Query 2179 -------------------------------------------------------------------------- 2178
Sbjct 3701 TATTTTGAAAGTTATTTTTGGGCATTGTAAAATACCTTGCTTCATACCCCAAAGAATAAGATATGACAGTCTGA 3774
Query 2179 -------------------------------------------------------------------------- 2178
Sbjct 3775 CATCGATTGTCTGAAAGTACTAATTGCATTTAAAATTCTTTAAGTTAACTACAACCTCCCAGACTGCAAAGCAA 3848
Query 2179 -------------------------------------------------------------------------- 2178
Sbjct 3849 ATTTCCAAACCCCAGGTCATACTTTTGTATGTATGTAAAAGCTTTAGCATTTTAGGGAAAAAAATCAATCTGTA 3922
Query 2179 -------------------------------------------------------------------------- 2178
Sbjct 3923 TTTTAAAAATAAACTTTGAGGTTTGAAAATAATAACAATATTCATAATGGTAGTATTAACATCTATTATGTATA 3996
Query 2179 -------------------------------------------------------------------------- 2178
Sbjct 3997 ACTTAATCTCAACATAATTTATTGAATTAGAATGAACCTGGAACACTTTTTGATGAATTGGTATCCTAGAGGCT 4070
Query 2179 -------------------------------------------------------------------------- 2178
Sbjct 4071 GTTTCCTTGGGCATTAACTGCTGGAGGATTAGGTAATCAGGGATTCCAAGTGTTGTGATCTTTTTTCTGATGAT 4144
Query 2179 -------------------------------------------------------------------------- 2178
Sbjct 4145 GCCACAGTCTTCAGTGTAAAAGTTCAGAAGCCTAAAAGAACAAGTGATCCTGAAAGTAGCTGATTCCAGACAAG 4218
Query 2179 -------------------------------------------------------------------------- 2178
Sbjct 4219 AAAATTATATTAGAACTTATGATATGGTTTTTTAAAGTATTTGTTATTACTCAGAAGGGTTCATGAATCAGTTT 4292
Query 2179 -------------------------------------------------------------------------- 2178
Sbjct 4293 CCACTACCTCTATTCCTTCTATTGAAGCTTTCCTCAAATCTACTTGTGATTCCTGATAGCTCACTGGCAACTGT 4366
Query 2179 -------------------------------------------------------------------------- 2178
Sbjct 4367 ACCAAGGTGGCCACTGTATCATCTACTGATCCTACTGCACCTAGCACTCTTGGCTCCAGATAACGCACAGAAAC 4440
Query 2179 -------------------------------------------------------------------------- 2178
Sbjct 4441 CTATTTTCTCACCAGCTGTCATTTCTTCTAGGGCATGCAGTTCTATGTTCGCAGTTCATGTGTAAAAATAAAAC 4514
Query 2179 -------------------------------------------------------------------------- 2178
Sbjct 4515 CAAATTCCTGGATTATCAATATCAGTTCTTTACCTGTGCATAAAAGAATATCATGAAGTAATTGAACTTATCTG 4588
Query 2179 -------------------------------------------------------------------------- 2178
Sbjct 4589 TTGATATAAAAACACAGATCCAATTCATGTCTGTGGATGCTGCAGGGACTGGCTCACTGGAGCCAAACCATGTG 4662
Query 2179 -------------------------------------------------------------------------- 2178
Sbjct 4663 GCAGAAACTCCTGAAATTGGTGGAAAAAGTGGAATATGGCAGATTGGGTAGGTAGGAGAACAATTTTGGAGATT 4736
Query 2179 -------------------------------------------------------------------------- 2178
Sbjct 4737 TTGTTTCTCATGTTAAAATGTCTGCATTTTATTTGCTGTACCCTGCCTACTCTGGTTTTAAGGATTTTTTGACT 4810
Query 2179 -------------------------------------------------------------------------- 2178
Sbjct 4811 TCTTTGAAAAGCACTGAATAATCTCTTTTCCAGGTCTAGATTTTTTGATGAGTACTGTGTAAAATTGTCAATAT 4884
Query 2179 -------------------------------------------- 2178
Sbjct 4885 TCAATGGATTATTTAATAATAAATTAAGAATTACACTCATAAAA 4928