Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_12306
Subject:
NR_148518.2
Aligned Length:
3902
Identities:
1337
Gaps:
2564

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GAGAGAGCAGAGAGCGAGCGGAGAGCGAGGTGTAGAGAAACCGAGGGGGAGAGAACCCGAGTGTGTGTATGCGT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GTGCGTGTGTGAGCGCGAGCGAGCGAGAGAGAGGAGCGAGAGAGTGTGAGCGAGAAAGAATAAAAGGAAAGAAG  148

Query    1  ---------ATGTATATAAAGATGGCCACGTTAGCAAACGGACAGGCTGACAACGCAAGCCTCAGTACCAACGG  65
                     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  ATTTTCTCTATGTATATAAAGATGGCCACGTTAGCAAACGGACAGGCTGACAACGCAAGCCTCAGTACCAACGG  222

Query   66  GCTCGGCAGCAGCCCGGGCAGTGCCGGGCACATGAACGGATTAAGCCACAGCCCGGGGAACCCGTCGACCATTC  139
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  GCTCGGCAGCAGCCCGGGCAGTGCCGGGCACATGAACGGATTAAGCCACAGCCCGGGGAACCCGTCGACCATTC  296

Query  140  CCATGAAGGACCATGATGCCATCAAGCTGTTCATTGGGCAGATCCCCCGCAACCTGGATGAGAAGGACCTCAAG  213
            |||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  CCATGAAGGACCACGATGCCATCAAGCTGTTCATTGGGCAGATCCCCCGCAACCTGGATGAGAAGGACCTCAAG  370

Query  214  CCCCTCTTCGAGGAGTTTGGCAAAATCTACGAGCTTACGGTTCTGAAGGACAGGTTCACAGGCATGCACAAAGG  287
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  CCCCTCTTCGAGGAGTTTGGCAAAATCTACGAGCTTACGGTTCTGAAGGACAGGTTCACAGGCATGCACAAAGG  444

Query  288  CTGCGCCTTCCTCACCTACTGCGAGCGTGAGTCAGCGCTGAAGGCCCAGAGCGCGCTGCACGAGCAGAAGACTC  361
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  CTGCGCCTTCCTCACCTACTGCGAGCGTGAGTCAGCGCTGAAGGCCCAGAGCGCGCTGCACGAGCAGAAGACTC  518

Query  362  TGCCCGGGATGAACCGGCCGATCCAGGTGAAGCCTGCGGACAGCGAGAGCCGAGGAGGTAGTAGCTGCCTGCGC  435
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||                 
Sbjct  519  TGCCCGGGATGAACCGGCCGATCCAGGTGAAGCCTGCGGACAGCGAGAGCCGAGGAG-----------------  575

Query  436  CAGCCCCCTTCACATAGAAAACTCTTCGTGGGCATGCTCAACAAGCAACAGTCCGAGGACGACGTGCGCCGCCT  509
                         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  576  -------------ATAGAAAACTCTTCGTGGGCATGCTCAACAAGCAACAGTCCGAGGACGACGTGCGCCGCCT  636

Query  510  TTTCGAGGCCTTTGGGAACATCGAGGAGTGCACCATCCTGCGCGGGCCCGACGGCAACAGCAAGGGGTGCGCCT  583
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  637  TTTCGAGGCCTTTGGGAACATCGAGGAGTGCACCATCCTGCGCGGGCCCGACGGCAACAGCAAGGGGTGCGCCT  710

Query  584  TTGTGAAGTACTCCTCCCACGCCGAGGCGCAGGCCGCCATCAACGCGCTACACGGCAGCCAGACCATGCCGGGA  657
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  711  TTGTGAAGTACTCCTCCCACGCCGAGGCGCAGGCCGCCATCAACGCGCTACACGGCAGCCAGACCATGCCGGGA  784

Query  658  GCCTCGTCCAGTCTGGTGGTCAAGTTCGCCGACACCGACAAGGAGCGCACGATGCGGCGAATGCAGCAGATGGC  731
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  785  GCCTCGTCCAGTCTGGTGGTCAAGTTCGCCGACACCGACAAGGAGCGCACGATGCGGCGAATGCAGCAGATGGC  858

Query  732  TGGCCAGATGGGCATGTTCAACCCCATGGCCATCCCTTTCGGGGCCTACGGCGCCTACGCTCAGGCACTGATGC  805
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  859  TGGCCAGATGGGCATGTTCAACCCCATGGCCATCCCTTTCGGGGCCTACGGCGCCTACGCTCAGGCACTGATGC  932

Query  806  AGCAGCAAGCGGCCCTGATGGCATCAGTCGCGCAGGGCGGCTACCTGAACCCCATGGCTGCCTTCGCTGCCGCC  879
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  933  AGCAGCAAGCGGCCCTGATGGCATCAGTCGCGCAGGGCGGCTACCTGAACCCCATGGCTGCCTTCGCTGCCGCC  1006

Query  880  CAGATGCAGCAGATGGCGGCCCTCAACATGAATGGCCTGGCGGCCGCACCTATGACCCCAACCTCAGGTGGCAG  953
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1007  CAGATGCAGCAGATGGCGGCCCTCAACATGAATGGCCTGGCGGCCGCACCTATGACCCCAACCTCAGGTGGCAG  1080

Query  954  CACCCCTCCGGGCATCACTGCACCAGCCGTGCCTAGCATCCCATCCCCCATTGGGGTGAATGGCTTCACCGGCC  1027
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081  CACCCCTCCGGGCATCACTGCACCAGCCGTGCCTAGCATCCCATCCCCCATTGGGGTGAATGGCTTCACCGGCC  1154

Query 1028  TCCCCCCACAGGCCAATGGGCAACCTGCTGCGGAAGCTGTGTTCGCCAATGGCATCCACCCCTACCCAGCACAG  1101
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1155  TCCCCCCACAGGCCAATGGGCAACCTGCTGCGGAAGCTGTGTTCGCCAATGGCATCCACCCCTACCCAGCACAG  1228

Query 1102  AGCCCCACCGCCGCGGACCCCCTGCAGCAGGCCTACGCCGGAGTGCAGCAGTATGCAG---CAGCTGCCTACCC  1172
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||
Sbjct 1229  AGCCCCACCGCCGCGGACCCCCTGCAGCAGGCCTACGCCGGAGTGCAGCAGTATGCAGGTCCAGCTGCCTACCC  1302

Query 1173  TGCTGCCTATGGTCAGATAAGCCAGGCCTTTCCTCAGCCGCCTCCAATGATCCCCCAGCAGCAGAGAGAAGGGC  1246
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
Sbjct 1303  TGCTGCCTATGGTCAGATAAGCCAGGCCTTTCCTCAGCCGCCTCCAATGATCCCCCAGCAGCAGAGAGAA----  1372

Query 1247  CCGAGGGCTGTAACCTGTTCATCTACCATCTGCCCCAGGAGTTTGGGGACGCTGAGCTGATGCAGATGTTCCTC  1320
                                                                                      
Sbjct 1373  --------------------------------------------------------------------------  1372

Query 1321  CCTTTCGGCTTCGTGAGCTTCGACAACCCGGCCAGCGCGCAGACCGCCATCCAGGCCATGAACGGCTTCCAGAT  1394
                  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1373  ------GGCTTCGTGAGCTTCGACAACCCGGCCAGCGCGCAGACCGCCATCCAGGCCATGAACGGCTTCCAGAT  1440

Query 1395  CGGCATGAAGAGGCTCAAGGTGCAGCTGAAGCGGCCCAAAGACGCCAATCGCCCGTAC----------------  1452
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                
Sbjct 1441  CGGCATGAAGAGGCTCAAGGTGCAGCTGAAGCGGCCCAAAGACGCCAATCGCCCGTACTGAGCGCCGGCGGGAG  1514

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 1515  CGTCCCCCGGGGGAGACCAGGACTCGCACAGGGCCAGTCAAATCCACCACAGTCTCGCGCTGAGCTAGGAATAA  1588

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 1589  AGTTCACGTAATCACATGAGAGTGGAGAAAAGTCCCCCATCCGGCAGGATGCTGAACGGGCTACATTAAAAAAC  1662

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 1663  AAACCTCTCTCTATATATATTTATAAATGAGAACTGTTGGATGACACCTTTGACATATCAGCCAATATCAATCA  1736

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 1737  AGCTGAAGACTCCAGACACTGTCTGTGTGACTGTAACATTTCTTCAAGGAAAGTATAGCGTCTATGGAGTTCAG  1810

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 1811  AGGGCACGTGTTTGGGGGAAAATATATATGACATGAAGAAGAAGATGAAGAAAAATGAGAAAAAAACACACAAA  1884

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 1885  AGGCAACTTTAAAACAAAATATCACGAGCAGACGGGGAGGCTGAAGGGCTGGGAGCTGGGAGGAGACGCTGCTT  1958

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 1959  ACCGATCCCGGGGCTTTTCCAGCCCACGGGCGCCTGACGCAGGCTGGGGCAAGTGGTGCGTGGGGCCTGGTCCC  2032

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 2033  CAAGGGGCGGCTGAGAGGCCGCCACTGAGCATCTCTATCTGTCATTCCTTTAGCTATTTAGGGACCAAAGGACC  2106

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 2107  AAACTTTTTATTGCAGATGTGTAGCTCTATGTCAAATAGAGGGGGAATGGAGGACCCCCTCCTTCCTGCCTCAT  2180

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 2181  GGCTGTTCTTGAAACAGCTTAGAGCGATTCTATGAAAAAATGTAATAAAAAATTAAAAAAAAAACAAAAAACAA  2254

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 2255  AAAAAACAACAAAAAAAGGAAAAATAACGCTTCAATGCTTTTAAAACAGCAAGATAATAGTTCTTTGATACTTT  2328

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 2329  GAGAGGCGCTTTGATGACCCTCATCCAAGTCTATGACACTTTCCTATGGTTTTCTGTATTCTATGTCTGGATGG  2402

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 2403  AGCTGTTAAAAGATGAACAAATTGGTGGATATTTGGGGAAAGCAACACAAATCTTAAAACTCACCCGTGAAGTG  2476

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 2477  TGAGAAAACAAGGAGGGGAACAAATGGGACTTACCAAGCAAGGTCATTGTTGTGAAAAGTCTGTAAATGCTTCT  2550

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 2551  AACTCTTCCCCCTCTTAAAATCATAATAGTTGTACAGAATTTTAAAAAGGAAAAGTTTAAAATACCTATATAAT  2624

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 2625  AGAAGAAAAATTAGAGGAAAGCAAAAAATAAAAAAAAAAAATAAAAAAGGAAAAAAAAAACCTATAGAAGTTAG  2698

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 2699  CATTACTGCTAAAATCCCAGATGTTGTAGGACTGTACTTTTGTAGAGTTTAGACAGAGCATCAATCCCTTCTCC  2772

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 2773  CCGCGAGTGCAGTCGGATGCCGTTGTCCCCAAGGGCCAGGCCGAACTCGCCCCACACCTGCGGGCGCCTGGCTG  2846

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 2847  CCGACGCCGGTGGAGGCCACGCCGTCGGTCGGGAACGGTCGCGTCGCCCGGGTCGCCGCCGCCGCCGCCGCCGT  2920

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 2921  CATCCTCGCCTCTCGCTTCCCTCTGGGAGCTGCGCGCGCTTCACTCACCTTCCGCTTCACTCGCCTTCCACGCT  2994

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 2995  TGCTCCAGAGACTTTCCGGGCAAGGGAGAACTGGGAACTTTCATCTTAAAACAACTAGACAACACACACACACA  3068

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 3069  CAAAACCTTAAAAAAGAGAGAGAAAAATAAACAATCTTTGAAGAATTTCTGAAACTGTTTACAAGGAATTTTGA  3142

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 3143  AAAACAGGGATGTTTAAATGATGCCGGCTCTGTTTTTCTGTAAATAAATTTGCATATTTTGTAGGACTTTTAAT  3216

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 3217  TGTAATGATAGAGAAAAAAACAAGGAAAACTATTTAATGAAAGCACGATATTTATCTTTGGTAAATGACTTTAG  3290

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 3291  AGCAGTTAAAGACATTGCTTAAAAAACTCAGAATCAGAAAAAACACTGAATTATTTAAGAACACATATATTTTA  3364

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 3365  AAGTATAACATATTTATTATAATTTATTTGCACCCTTGGGAAGATTGCTTTGGCATTCTGCCTTGATTCCTTCT  3438

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 3439  CATTGATGTCCAGGTCATCTGGAGGCCGGGGGTTCTCAGACCTACCAGTTTCCCTTTAGAAGAACAAATTTCCA  3512

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 3513  GTTCCTCTAGGGCCTCCTGCCTTTCCTTTCTTTCTGTCAATTTTGTTGTTGTTGTTGTTTTTCATTTTCTTTTT  3586

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 3587  TTCTCTTGACTCCTCCTTTTAGGATGTCCAGATGTAAAAAAAAAAAAAAAAAAAAGAAAAAAAGAAAAAAAAAA  3660

Query 1453  --------------------------------------------------------------------------  1452
                                                                                      
Sbjct 3661  GAAAACAGCTGCAGTTCAGTACAACTGCTCTTTTCACACTCAACTCCCTAAAACTCCTTGTAACCTTCTGTAAC  3734

Query 1453  ------------------------------------------------------  1452
                                                                  
Sbjct 3735  TATTGGATGACGCTTTCTCCAGCTTAGCCCTAAATAAAGCACAGTTTAAAAAAA  3788

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